$ GenomeThreader 1.2.3 (2008-11-15 02:38:08)
$ Date run: 2008-11-18 11:32:09
$ Arguments: -v -frompos 1 -topos 200000 -inverse -force -o arab_mapping.txt -cdna CeresTigr.gz -species arabidopsis -genomic NC_003070.fna.gz
********************************************************************************
EST Sequence: file=CeresTigr.gz, strand=+, description=124537

    1  ATATATACAT TTTACAATCA CTTGCTAGAC CAACGGGCTT CACTTGTTTC TCTCCCAAAG
   61  TTTCTTCATC ATCCTTGCGA TAAAGAAAAC AACAATCGGC TGTTTCGTTT CGATCCAAAG
  121  ATGAGTGAAG AAACTAAAGA TAACCAGAGG CTGCAGCGAC CAGCTCCTCG TCTTAACGAG
  181  AGGATTCTCT CATCCTTGTC AAGAAGATCC GTAGCTGCTC ATCCATGGCA TGATCTTGAG
  241  ATTGGACCTG GAGCTCCACA GATTTTCAAT GTGGTTGTTG AGATCACTAA AGGAAGCAAG
  301  GTCAAATACG AGCTTGACAA AAAGACAGGA CTCATCAAGG TTGATCGTAT TCTCTACTCA
  361  TCAGTTGTGT ACCCTCACAA CTATGGTTTT GTTCCTCGCA CATTGTGTGA AGACAATGAC
  421  CCCATTGATG TCTTAGTCAT CATGCAGGAA CCTGTGCTTC CGGGTTGTTT TCTGCGTGCC
  481  AGAGCCATTG GATTAATGCC TATGATTGAC CAGGGTGAAA AAGATGACAA GATCATTGCA
  541  GTGTGTGTTG ATGATCCTGA ATATAAGCAC TACACTGACA TCAAAGAACT TCCTCCTCAC
  601  CGTCTCTCTG AAATCCGTCG TTTCTTCGAA GACTACAAGA AAAACGAGAA CAAGGAAGTT
  661  GCAGTGAATG ATTTTCTGCC ATCTGAGTCT GCGGTTGAAG CTATCCAGTA CTCAATGGAC
  721  CTCTATGCTG AATACATTCT CCACACCCTG AGGCGTTGAA GCTTCTCCTC AGAAGATTTC
  781  TGCATCATCT ATGTTTCTGT TACTTTTCAT TGATAATAAG AAGCATATGA TCCTAATTGA
  841  TATTACTTTT ATCTCTGCAT TTTTCTTCCT TATCATTTGG TCCTTCTGTA ATTTCGTTTT
  901  AAAGACCCTT TCTTGGCATT GAAATTTTTG GTTTAATTTG TTTGAAGAGT TCT

Genomic Template: file=NC_003070.fna.gz, strand=-, from=33448, to=30888, description=gi|42592260|ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence

Predicted gene structure:

 Exon  1    33148    33029 ( 120 n);  cDNA      1    120 ( 120 n); score: 1.000
  Intron  1    33028    32671 ( 358 n); Pd: 1.000 (s: 1.00), Pa: 0.994 (s: 1.00)
 Exon  2    32670    32547 ( 124 n);  cDNA    121    244 ( 124 n); score: 1.000
  Intron  2    32546    32460 (  87 n); Pd: 0.997 (s: 1.00), Pa: 0.672 (s:    0)
 Exon  3    32459    32431 (  29 n);  cDNA    245    273 (  29 n); score: 1.000
  Intron  3    32430    32348 (  83 n); Pd: 0.999 (s:    0), Pa: 1.000 (s: 1.00)
 Exon  4    32347    32282 (  66 n);  cDNA    274    339 (  66 n); score: 1.000
  Intron  4    32281    32196 (  86 n); Pd: 0.997 (s: 1.00), Pa: 0.781 (s: 1.00)
 Exon  5    32195    32088 ( 108 n);  cDNA    340    447 ( 108 n); score: 1.000
  Intron  5    32087    31999 (  89 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 1.00)
 Exon  6    31998    31933 (  66 n);  cDNA    448    513 (  66 n); score: 1.000
  Intron  6    31932    31814 ( 119 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00)
 Exon  7    31813    31693 ( 121 n);  cDNA    514    634 ( 121 n); score: 1.000
  Intron  7    31692    31603 (  90 n); Pd: 0.990 (s: 1.00), Pa: 0.985 (s: 1.00)
 Exon  8    31602    31521 (  82 n);  cDNA    635    716 (  82 n); score: 1.000
  Intron  8    31520    31425 (  96 n); Pd: 0.999 (s: 1.00), Pa: 0.931 (s: 1.00)
 Exon  9    31424    31188 ( 237 n);  cDNA    717    953 ( 237 n); score: 0.996

MATCH	42592260-	124537+	0.999	953	1.000	C
PGS_42592260-_124537+	(33148  33029,32670  32547,32459  32431,32347  32282,32195  32088,31998  31933,31813  31693,31602  31521,31424  31188)

Alignment (genomic DNA sequence = upper lines):

ATATATACAT TTTACAATCA CTTGCTAGAC CAACGGGCTT CACTTGTTTC TCTCCCAAAG       33089
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ATATATACAT TTTACAATCA CTTGCTAGAC CAACGGGCTT CACTTGTTTC TCTCCCAAAG          60


TTTCTTCATC ATCCTTGCGA TAAAGAAAAC AACAATCGGC TGTTTCGTTT CGATCCAAAG       33029
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TTTCTTCATC ATCCTTGCGA TAAAGAAAAC AACAATCGGC TGTTTCGTTT CGATCCAAAG         120


GTACGTTTTT TTTTCTTTTG TCATCGTTCT AAGATCATCA AAGTTTGATG CTTTTCCATG       32969
                                                                 
.......... .......... .......... .......... .......... ..........         120


// intron part 32968 32789 (180 n) not shown                   //

//........ .......... .......... .......... .......... ........//


TTGATTCGCT TTTTCCATTT AATACTCTTG ATTCGATTGA TTCTCTCTCT GCCAATTAGG       32729
                                                                 
.......... .......... .......... .......... .......... ..........         120


GTTATGATGT TAGATTCAGT CAATATCAAT GAGTGATGAA ACGTTCTGAT TTTGACAGAT       32669
                                                               ||
.......... .......... .......... .......... .......... ........AT         122


GAGTGAAGAA ACTAAAGATA ACCAGAGGCT GCAGCGACCA GCTCCTCGTC TTAACGAGAG       32609
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GAGTGAAGAA ACTAAAGATA ACCAGAGGCT GCAGCGACCA GCTCCTCGTC TTAACGAGAG         182


GATTCTCTCA TCCTTGTCAA GAAGATCCGT AGCTGCTCAT CCATGGCATG ATCTTGAGAT       32549
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GATTCTCTCA TCCTTGTCAA GAAGATCCGT AGCTGCTCAT CCATGGCATG ATCTTGAGAT         242


TGGTATATAA ATCATTCTAA ACATGCTACT TTTTGATTTC ATACTTTTGT ATTCTGTTAC       32489
||                                                               
TG........ .......... .......... .......... .......... ..........         244


TAAATCATAA GTCTGGATAA TCTATCTAGG ACCTGGAGCT CCACAGATTT TCAATGTGGT       32429
                               | |||||||||| |||||||||| ||||||||  
.......... .......... .........G ACCTGGAGCT CCACAGATTT TCAATGTG..         273


AAGTTTTTTC CTACTCTTTG TTCTAAACAG AGTATGTTGT TATTAGATTC TCTAATCATT       32369
                                                                 
.......... .......... .......... .......... .......... ..........         273


TTATCTTTGG ATGATTATTA GGTTGTTGAG ATCACTAAAG GAAGCAAGGT CAAATACGAG       32309
                       ||||||||| |||||||||| |||||||||| ||||||||||
.......... .......... .GTTGTTGAG ATCACTAAAG GAAGCAAGGT CAAATACGAG         312


CTTGACAAAA AGACAGGACT CATCAAGGTT AGATGAGAAC AAAGTTTATT TTTTATATGA       32249
|||||||||| |||||||||| |||||||                                    
CTTGACAAAA AGACAGGACT CATCAAG... .......... .......... ..........         339


ATGGTTTTCT TATAGCAAAA TCAATCTCAA CAAGTTTGAA TTCTCTCATT CAGGTTGATC       32189
                                                          |||||||
.......... .......... .......... .......... .......... ...GTTGATC         346


GTATTCTCTA CTCATCAGTT GTGTACCCTC ACAACTATGG TTTTGTTCCT CGCACATTGT       32129
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GTATTCTCTA CTCATCAGTT GTGTACCCTC ACAACTATGG TTTTGTTCCT CGCACATTGT         406


GTGAAGACAA TGACCCCATT GATGTCTTAG TCATCATGCA GGTATTACTC TTTCTTTCTT       32069
|||||||||| |||||||||| |||||||||| |||||||||| |                    
GTGAAGACAA TGACCCCATT GATGTCTTAG TCATCATGCA G......... ..........         447


TCTCATATTA TCCCTATACT ATTTGCACCA ATTTTTTGTA TTTCAAATAT ATATTATTAT       32009
                                                                 
.......... .......... .......... .......... .......... ..........         447


CTTTGTGTAG GAACCTGTGC TTCCGGGTTG TTTTCTGCGT GCCAGAGCCA TTGGATTAAT       31949
           |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
.......... GAACCTGTGC TTCCGGGTTG TTTTCTGCGT GCCAGAGCCA TTGGATTAAT         497


GCCTATGATT GACCAGGTAA AACCTAAACT TGATCAATGA AAAGACTCTG TTTTTTTTTT       31889
|||||||||| ||||||                                                
GCCTATGATT GACCAG.... .......... .......... .......... ..........         513


CTCTTACTCT AATCCTTTAG GTCAGTTTAA ATGGTCTTGT ACTCCAATCT TGTATTTTTG       31829
                                                                 
.......... .......... .......... .......... .......... ..........         513


GCGCTGTAAT TTTAGGGTGA AAAAGATGAC AAGATCATTG CAGTGTGTGT TGATGATCCT       31769
                ||||| |||||||||| |||||||||| |||||||||| ||||||||||
.......... .....GGTGA AAAAGATGAC AAGATCATTG CAGTGTGTGT TGATGATCCT         558


GAATATAAGC ACTACACTGA CATCAAAGAA CTTCCTCCTC ACCGTCTCTC TGAAATCCGT       31709
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GAATATAAGC ACTACACTGA CATCAAAGAA CTTCCTCCTC ACCGTCTCTC TGAAATCCGT         618


CGTTTCTTCG AAGACTGTAT CCTTTTTCTT CAGTGTTCCT CCTTATTCAT CTCTATTGAT       31649
|||||||||| ||||||                                                
CGTTTCTTCG AAGACT.... .......... .......... .......... ..........         634


CTCTCAACAA GTATTAGTTT TTCCCTTTAA CTCTAATATC TTACAGACAA GAAAAACGAG       31589
                                                  |||| ||||||||||
.......... .......... .......... .......... ......ACAA GAAAAACGAG         648


AACAAGGAAG TTGCAGTGAA TGATTTTCTG CCATCTGAGT CTGCGGTTGA AGCTATCCAG       31529
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AACAAGGAAG TTGCAGTGAA TGATTTTCTG CCATCTGAGT CTGCGGTTGA AGCTATCCAG         708


TACTCAATGT AAGCCTCTGT TTCTTTATCA AGAACCAAAC TCTCTTACAT CTTTTTTAGT       31469
||||||||                                                         
TACTCAAT.. .......... .......... .......... .......... ..........         716


TTGTAACATT AAAGCAACTC TGGATTCTGA ATTCCCCATT ACAGGGACCT CTATGCTGAA       31409
                                                |||||| ||||||||||
.......... .......... .......... .......... ....GGACCT CTATGCTGAA         732


TACATTCTCC ACACCCTGAG GCGTTGAAGC TTCTCCTCAG AAGATTTCTG CAGCATCTAT       31349
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || |||||||
TACATTCTCC ACACCCTGAG GCGTTGAAGC TTCTCCTCAG AAGATTTCTG CATCATCTAT         792


GTTTCTGTTA CTTTTCATTG ATAATAAGAA GCATATGATC CTAATTGATA TTACTTTTAT       31289
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GTTTCTGTTA CTTTTCATTG ATAATAAGAA GCATATGATC CTAATTGATA TTACTTTTAT         852


CTCTGCATTT TTCTTCCTTA TCATTTGGTC CTTCTGTAAT TTCGTTTTAA AGACCCTTTC       31229
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTCTGCATTT TTCTTCCTTA TCATTTGGTC CTTCTGTAAT TTCGTTTTAA AGACCCTTTC         912


TTGGCATTGA AATTTTTGGT TTAATTTGTT TGAAGAGTTC T                           31188
|||||||||| |||||||||| |||||||||| |||||||||| |
TTGGCATTGA AATTTTTGGT TTAATTTGTT TGAAGAGTTC T                             953


********************************************************************************
EST Sequence: file=CeresTigr.gz, strand=+, description=20749

     1  AAAGCACATT GGGGCTTATC TCTCTCTAAG TAATACACAC AAAAATAACT CACATATAGA
    61  GAGAGATATG GCTGGAGATA TGCAAGGAGT GAGAGTAGTA GAAAAATATT CACCGGTCAT
   121  AGTGATGGTG ATGTCAAATG TAGCGATGGG TTCGGTGAAT GCACTTGTGA AGAAAGCTCT
   181  TGATGTTGGT GTGAACCATA TGGTCATTGG TGCTTATCGA ATGGCTATTT CCGCTTTAAG
   241  TTTGGTTCCC TTTGCCTATG TCTTGGAAAG GAAAACAAGA CCACAAATAA CGTTTAGGCT
   301  AATGGTCGAT CATTTCGTCA GTGGCCTTCT CGGGGCGAGT TTGATGCAGT TTTTCTTTTT
   361  GCTTGGTCTG TCGTACACGT CAGCAACTGT TTCGTGTGCT TTGGTAAGCA TGTTGCCTGC
   421  AATCACCTTC GCTTTGGCCC TTATTTTCAG GACTGAAAAT GTGAAGATTC TAAAGACCAA
   481  AGCAGGAATG TTGAAGGTGA TTGGAACTTT GATCTGTATA AGTGGAGCTT TGTTCTTAAC
   541  ATTTTACAAA GGCCCACAAA TATCAAACTC TCACTCTCAC TCTCACGGTG GGGCTTCCCA
   601  CAAAACAACG ATCAAGACAA GGCCAATAAT TGGCTTCTTG GATGTCTTTA TTTAACCATA
   661  GGAACAGTGT TGCTATCTCT ATGGATGTTG TTTCAAGGGA CTTTAAGTAT TAAGTACCCT
   721  TGCAAATACT CGAGCACTTG TCTTATGTCA ATTTTCGCGG CATTTCAATG TGCTCTCTTG
   781  AGCCTTTACA AGAGCAGAGA CGTTAATGAT TGGATCATAG ATGATAGATT CGTTATCACC
   841  GTCATCATAT ACGCTGGAGT GGTAGGACAA GCAATGACGA CGGTTGCAAC AACATGGGGG
   901  ATTAAAAAAT TAGGAGCTGT GTTCGCATCG GCGTTTTTCC CACTTACTCT CATTTCGGCT
   961  ACTCTATTTG ATTTCCTCAT TTTACACACT CCTTTATACC TTGGAAGTGT GATTGGATCA
  1021  CTAGTGACCA TAACGGGTCT CTACATGTTC TTGTGGGGGA AGAACAAAGA AACGGAATCA
  1081  TCAACTGCAT TGTCTTCAGG AATGGATAAC GAAGCTCAAT ATACTACTCC TAATAAGGAT
  1141  AACGACTCTA AGTCGCCCGT TTAATTTAAT TATATTGTTG TTAATGTATG TTTCAAATAA
  1201  CTGTTATGTC CTAGTTAATG TTTAAGGAGA GGTAATGAGA GATAAAATTT TATAATTCCA
  1261  AACATCAACG TAGAGATTTG TGAAATATTT AAATCCGGTT TGTTTGGTT

Genomic Template: file=NC_003070.fna.gz, strand=-, from=41244, to=38453, description=gi|42592260|ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence

Predicted gene structure:

 Exon  1    40944    40675 ( 270 n);  cDNA      1    270 ( 270 n); score: 0.996
  Intron  1    40674    40536 ( 139 n); Pd: 0.000 (s: 0.98), Pa: 0.993 (s: 1.00)
 Exon  2    40535    40473 (  63 n);  cDNA    271    333 (  63 n); score: 1.000
  Intron  2    40472    40330 ( 143 n); Pd: 0.997 (s: 1.00), Pa: 0.995 (s: 1.00)
 Exon  3    40329    40213 ( 117 n);  cDNA    334    450 ( 117 n); score: 1.000
  Intron  3    40212    39815 ( 398 n); Pd: 1.000 (s: 1.00), Pa: 0.996 (s: 1.00)
 Exon  4    39814    39409 ( 406 n);  cDNA    451    855 ( 405 n); score: 0.998
  Intron  4    39408    39288 ( 121 n); Pd: 0.999 (s: 1.00), Pa: 1.000 (s: 1.00)
 Exon  5    39287    39136 ( 152 n);  cDNA    856   1007 ( 152 n); score: 1.000
  Intron  5    39135    39055 (  81 n); Pd: 0.978 (s: 1.00), Pa: 0.935 (s: 1.00)
 Exon  6    39054    38753 ( 302 n);  cDNA   1008   1309 ( 302 n); score: 1.000

MATCH	42592260-	20749+	0.998	1310	1.001	C
PGS_42592260-_20749+	(40944  40675,40535  40473,40329  40213,39814  39409,39287  39136,39054  38753)

Alignment (genomic DNA sequence = upper lines):

AAAGCACATT GGGGCTTATC TCTCTCTAAG TAATACACAC AAAAATAACT CACATATAGA       40885
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AAAGCACATT GGGGCTTATC TCTCTCTAAG TAATACACAC AAAAATAACT CACATATAGA          60


GAGAGATATG GCTGGAGATA TGCAAGGAGT GAGAGTAGTA GAAAAATATT CACCGGTCAT       40825
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GAGAGATATG GCTGGAGATA TGCAAGGAGT GAGAGTAGTA GAAAAATATT CACCGGTCAT         120


AGTGATGGTG ATGTCAAATG TAGCGATGGG TTCGGTGAAT GCACTTGTGA AGAAAGCTCT       40765
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AGTGATGGTG ATGTCAAATG TAGCGATGGG TTCGGTGAAT GCACTTGTGA AGAAAGCTCT         180


TGATGTTGGT GTGAACCATA TGGTCATTGG TGCTTATCGA ATGGCTATTT CCGCTTTAAT       40705
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| 
TGATGTTGGT GTGAACCATA TGGTCATTGG TGCTTATCGA ATGGCTATTT CCGCTTTAAG         240


TTTGGTTCCC TTTGCCTATG TCTTGGAAAG GTTTGATATG TTGATCGAAA TAGGAGATAG       40645
|||||||||| |||||||||| ||||||||||                                 
TTTGGTTCCC TTTGCCTATG TCTTGGAAAG .......... .......... ..........         270


TGAAAATTCT GTATTCTAAC ATGCAAGTAG AAATTTAGAA GCCACGAATG TTAATATATA       40585
                                                                 
.......... .......... .......... .......... .......... ..........         270


TGTATAATTT TAATGAATTT TCTAAAGAAT TTCTATTGTT GTTAAATAGG AAAACAAGAC       40525
                                                     | ||||||||||
.......... .......... .......... .......... .........G AAAACAAGAC         281


CACAAATAAC GTTTAGGCTA ATGGTCGATC ATTTCGTCAG TGGCCTTCTC GGGTTAGTCC       40465
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||        
CACAAATAAC GTTTAGGCTA ATGGTCGATC ATTTCGTCAG TGGCCTTCTC GG........         333


TCTCAAACCT AATTGCATTT TATTATATTA TTTTGTCGGC CATTTGCAAT TTATTCTTAT       40405
                                                                 
.......... .......... .......... .......... .......... ..........         333


AGTTTAATAG TTTGTACTAA TCATAAGCTA AATTATTAAA GATCTTTTAA TTAATTTATG       40345
                                                                 
.......... .......... .......... .......... .......... ..........         333


GGTTTAAATT GACAGGGCGA GTTTGATGCA GTTTTTCTTT TTGCTTGGTC TGTCGTACAC       40285
                ||||| |||||||||| |||||||||| |||||||||| ||||||||||
.......... .....GGCGA GTTTGATGCA GTTTTTCTTT TTGCTTGGTC TGTCGTACAC         378


GTCAGCAACT GTTTCGTGTG CTTTGGTAAG CATGTTGCCT GCAATCACCT TCGCTTTGGC       40225
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GTCAGCAACT GTTTCGTGTG CTTTGGTAAG CATGTTGCCT GCAATCACCT TCGCTTTGGC         438


CCTTATTTTC AGGTAACGAT GGAACCATCT AACCTCTTTA TCATCAATTG ATAATATATA       40165
|||||||||| ||                                                    
CCTTATTTTC AG........ .......... .......... .......... ..........         450


TTAATCTAGA TTTTTAAAAA GCACTACTGA AAGTATTGAC AACATAATAT AGAACATTAT       40105
                                                                 
.......... .......... .......... .......... .......... ..........         450


// intron part 40104 39925 (180 n) not shown                   //

//........ .......... .......... .......... .......... ........//


GCGACTCTAT TTTGTAACGC CAGGAAAGAA AAAAAACAAA TACTTTCTAC TATGATTCAT       39865
                                                                 
.......... .......... .......... .......... .......... ..........         450


ATTCTCAATA ACTTGTTTCA AAATAATCAT TAAAATTTTA CTTTTTTTAG GACTGAAAAT       39805
                                                       ||||||||||
.......... .......... .......... .......... .......... GACTGAAAAT         460


GTGAAGATTC TAAAGACCAA AGCAGGAATG TTGAAGGTGA TTGGAACTTT GATCTGTATA       39745
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GTGAAGATTC TAAAGACCAA AGCAGGAATG TTGAAGGTGA TTGGAACTTT GATCTGTATA         520


AGTGGAGCTT TGTTCTTAAC ATTTTACAAA GGCCCACAAA TATCAAACTC TCACTCTCAC       39685
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AGTGGAGCTT TGTTCTTAAC ATTTTACAAA GGCCCACAAA TATCAAACTC TCACTCTCAC         580


TCTCACGGTG GGGCTTCCCA CAACAACAAC GATCAAGACA AGGCCAATAA TTGGCTTCTT       39625
|||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| ||||||||||
TCTCACGGTG GGGCTTCCCA CAA-AACAAC GATCAAGACA AGGCCAATAA TTGGCTTCTT         639


GGATGTCTTT ATTTAACCAT AGGAACAGTG TTGCTATCTC TATGGATGTT GTTTCAAGGG       39565
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GGATGTCTTT ATTTAACCAT AGGAACAGTG TTGCTATCTC TATGGATGTT GTTTCAAGGG         699


ACTTTAAGTA TTAAGTACCC TTGCAAATAC TCGAGCACTT GTCTTATGTC AATTTTCGCG       39505
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ACTTTAAGTA TTAAGTACCC TTGCAAATAC TCGAGCACTT GTCTTATGTC AATTTTCGCG         759


GCATTTCAAT GTGCTCTCTT GAGCCTTTAC AAGAGCAGAG ACGTTAATGA TTGGATCATA       39445
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GCATTTCAAT GTGCTCTCTT GAGCCTTTAC AAGAGCAGAG ACGTTAATGA TTGGATCATA         819


GATGATAGAT TCGTTATCAC CGTCATCATA TACGCTGTAA GTTACAAACA TCATATCTTT       39385
|||||||||| |||||||||| |||||||||| ||||||                          
GATGATAGAT TCGTTATCAC CGTCATCATA TACGCT.... .......... ..........         855


ATAAATTAAC TTTTTAAAAA TTATAAGATT AGTATGTAAG AACTTAAGAT ATTAATGTGG       39325
                                                                 
.......... .......... .......... .......... .......... ..........         855


GTTTTTTTAT GTGGTTTTTT TTTATCATAT ATTATAGGGA GTGGTAGGAC AAGCAATGAC       39265
                                        ||| |||||||||| ||||||||||
.......... .......... .......... .......GGA GTGGTAGGAC AAGCAATGAC         878


GACGGTTGCA ACAACATGGG GGATTAAAAA ATTAGGAGCT GTGTTCGCAT CGGCGTTTTT       39205
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GACGGTTGCA ACAACATGGG GGATTAAAAA ATTAGGAGCT GTGTTCGCAT CGGCGTTTTT         938


CCCACTTACT CTCATTTCGG CTACTCTATT TGATTTCCTC ATTTTACACA CTCCTTTATA       39145
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CCCACTTACT CTCATTTCGG CTACTCTATT TGATTTCCTC ATTTTACACA CTCCTTTATA         998


CCTTGGAAGG TATCTTCTTC GATAATCTCT ATCAAATTAA TTTTGTCTAG GCATAACACT       39085
|||||||||                                                        
CCTTGGAAG. .......... .......... .......... .......... ..........        1007


AATTACAACA TTAAAACTTT TGGTCTACAG TGTGATTGGA TCACTAGTGA CCATAACGGG       39025
                                 |||||||||| |||||||||| ||||||||||
.......... .......... .......... TGTGATTGGA TCACTAGTGA CCATAACGGG        1037


TCTCTACATG TTCTTGTGGG GGAAGAACAA AGAAACGGAA TCATCAACTG CATTGTCTTC       38965
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TCTCTACATG TTCTTGTGGG GGAAGAACAA AGAAACGGAA TCATCAACTG CATTGTCTTC        1097


AGGAATGGAT AACGAAGCTC AATATACTAC TCCTAATAAG GATAACGACT CTAAGTCGCC       38905
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AGGAATGGAT AACGAAGCTC AATATACTAC TCCTAATAAG GATAACGACT CTAAGTCGCC        1157


CGTTTAATTT AATTATATTG TTGTTAATGT ATGTTTCAAA TAACTGTTAT GTCCTAGTTA       38845
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CGTTTAATTT AATTATATTG TTGTTAATGT ATGTTTCAAA TAACTGTTAT GTCCTAGTTA        1217


ATGTTTAAGG AGAGGTAATG AGAGATAAAA TTTTATAATT CCAAACATCA ACGTAGAGAT       38785
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ATGTTTAAGG AGAGGTAATG AGAGATAAAA TTTTATAATT CCAAACATCA ACGTAGAGAT        1277


TTGTGAAATA TTTAAATCCG GTTTGTTTGG TT                                     38753
|||||||||| |||||||||| |||||||||| ||
TTGTGAAATA TTTAAATCCG GTTTGTTTGG TT                                      1309


********************************************************************************
EST Sequence: file=CeresTigr.gz, strand=+, description=21739

     1  AAAATAATTT ACTTTCTGGT CCTTCGATAA TGGCGGCCTC CTGCTTCGCA ATTCCCTTAT
    61  CTTCTTCTTC TCGATCGTCT CACAATGCAA TTCCCAAATA CAAAACCCTA ATCTCTTCTT
   121  CTTCTTACTC TTACTTAGAA TCTCTGAAAC TTCAATTCTC TTCTTCCAAT TCTTTTCATC
   181  ACTCTTCTCT TTCTCGTCCC TTTGTAGCTC AACCACTTCA AATCAAGGTC TCTTCTTCAG
   241  AATTATCAGT TCTCGATGAA GAAAAAGAAG AAGAAGTAGT TAAAGGAGAA GCAGAACCCA
   301  ATAAAGATAG TGTCGTCTCT AAAGCAGAAC CAGTAAAGAA ACCGAGACCT TGCGAGCTCT
   361  ACGTGTGTAA TATCCCTAGA AGCTACGACA TTGCTCAGCT TCTTGACATG TTTCAGCCTT
   421  TTGGAACTGT AATCTCTGTA GAGGTATCGC GAAATCCTCA GACGGGAGAG AGCCGTGGAA
   481  GCGGGTACGT GACAATGGGT TCTATAAACT CTGCCAAAAT CGCCATTGCT TCTCTTGATG
   541  GAACAGAAGT AGGTGGTCGG GAAATGCGGG TTAGGTACTC TGTTGACATG AATCCAGGAA
   601  CAAGAAGAAA CCCTGAAGTC TTGAACTCAA CTCCAAAGAA GATTCTGATG TACGAAAGCC
   661  AACACAAGGT CTATGTCGGA AATCTCCCTT GGTTCACACA GCCTGATGGT TTGAGAAACC
   721  ACTTTAGCAA GTTTGGCACA ATCGTAAGCA CGAGAGTGTT ACATGATCGT AAGACCGGGA
   781  GAAACAGAGT CTTTGCCTTT CTTTCTTTTA CAAGCGGTGA AGAACGTGAT GCGGCTTTAT
   841  CATTCAATGG AACACAATAT GAAGGTCGCA GAATCATCGT CAGAGAAGGT ATCGAGAAGA
   901  GTGAGTCGTA AACCAACTGT TCTGCTTTTG CTGCAAAGAC ATCTCTTGGA CACAAACAAT
   961  GTGTAATGAA TGTCTTCTGA TTTCTTCGAC AAGTAACCTT TACATATTAT ATCCTTCTCG
  1021  ATTTTGTTTA TCACCCATTA TATCTACCTG TATAATTCTC TTTTC

Genomic Template: file=NC_003070.fna.gz, strand=-, from=47117, to=45049, description=gi|42592260|ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence

Predicted gene structure:

 Exon  1    46818    46376 ( 443 n);  cDNA      1    443 ( 443 n); score: 0.995
  Intron  1    46375    46146 ( 230 n); Pd: 0.963 (s: 1.00), Pa: 0.925 (s: 1.00)
 Exon  2    46145    46044 ( 102 n);  cDNA    444    545 ( 102 n); score: 1.000
  Intron  2    46043    45955 (  89 n); Pd: 0.581 (s: 1.00), Pa: 0.967 (s: 1.00)
 Exon  3    45954    45646 ( 309 n);  cDNA    546    854 ( 309 n); score: 1.000
  Intron  3    45645    45560 (  86 n); Pd: 0.000 (s: 1.00), Pa: 0.947 (s: 1.00)
 Exon  4    45559    45349 ( 211 n);  cDNA    855   1065 ( 211 n); score: 1.000

MATCH	42592260-	21739+	0.998	1065	1.000	C
PGS_42592260-_21739+	(46818  46376,46145  46044,45954  45646,45559  45349)

Alignment (genomic DNA sequence = upper lines):

CAAATAATTT ACTTTCTGGT CCTTCGATAA TGGCGGCCTC CTGCTTCGCA ATTCCCTTAT       46759
 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AAAATAATTT ACTTTCTGGT CCTTCGATAA TGGCGGCCTC CTGCTTCGCA ATTCCCTTAT          60


CTTCTTCTTC TCGATCGTCT CACAATGCAA TTCCCAAATA CAAAACCCTA ATCTCTTCTT       46699
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTTCTTCTTC TCGATCGTCT CACAATGCAA TTCCCAAATA CAAAACCCTA ATCTCTTCTT         120


CTTCTTACTC TTACTTAGAA TCTCTGAAAC TTCAATTCTC TTCTTCCAAT TCTTTTCATC       46639
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTTCTTACTC TTACTTAGAA TCTCTGAAAC TTCAATTCTC TTCTTCCAAT TCTTTTCATC         180


ACTCTTCTCT TTCTCGTCCC TTTGTAGCTC AACCACTTCA AATCAAGGTC TCTTCTTCAG       46579
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ACTCTTCTCT TTCTCGTCCC TTTGTAGCTC AACCACTTCA AATCAAGGTC TCTTCTTCAG         240


AATTATCAGT TCTCGATGAA GAAAAAGAAG AAGAAGTAGT TAAAGGAGAA GCAGAACCCA       46519
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AATTATCAGT TCTCGATGAA GAAAAAGAAG AAGAAGTAGT TAAAGGAGAA GCAGAACCCA         300


ATAAAGATAG TGTCGTCTCC AAAGCAGAAC CAGTAAAGAA ACCGAGACCT TGCGAGCTCT       46459
|||||||||| |||||||||  |||||||||| |||||||||| |||||||||| ||||||||||
ATAAAGATAG TGTCGTCTCT AAAGCAGAAC CAGTAAAGAA ACCGAGACCT TGCGAGCTCT         360


ACGTGTGTAA TATCCCTAGA AGCTACGACA TTGCTCAGCT TCTTGACATG TTTCAGCCTT       46399
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ACGTGTGTAA TATCCCTAGA AGCTACGACA TTGCTCAGCT TCTTGACATG TTTCAGCCTT         420


TTGGAACTGT AATCTCTGTA GAGGTGGTAC TTCTTATCCA GATTTGATTG ATCCTACAAT       46339
|||||||||| |||||||||| |||                                        
TTGGAACTGT AATCTCTGTA GAG....... .......... .......... ..........         443


GCCTTTATGA AAATTCAAAG TTTTACTCTT TCAACTTAGC TTTGAAAATT CAAAGATCAT       46279
                                                                 
.......... .......... .......... .......... .......... ..........         443


CCACAATGTA ATTTGAAAAT ACTTAGCTTT GAGTTCCATC AAGACGAATC AAACGTACTG       46219
                                                                 
.......... .......... .......... .......... .......... ..........         443


GTTACTCTTT TGAGTATATG GATGATTGAC AAGTATAGTG AGAGGTGTGC ATTGCTTGGA       46159
                                                                 
.......... .......... .......... .......... .......... ..........         443


AATGATGTTG CAGGTATCGC GAAATCCTCA GACGGGAGAG AGCCGTGGAA GCGGGTACGT       46099
              ||||||| |||||||||| |||||||||| |||||||||| ||||||||||
.......... ...GTATCGC GAAATCCTCA GACGGGAGAG AGCCGTGGAA GCGGGTACGT         490


GACAATGGGT TCTATAAACT CTGCCAAAAT CGCCATTGCT TCTCTTGATG GAACAGTAAG       46039
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||     
GACAATGGGT TCTATAAACT CTGCCAAAAT CGCCATTGCT TCTCTTGATG GAACA.....         545


AGCCCGGGAA ACCAAAAAAC AAGTCTATCT TTCTTCTGGT TGAGTGTAAA GTTGAGTGCT       45979
                                                                 
.......... .......... .......... .......... .......... ..........         545


TTGGTTTTGT TGCTATATAT GAAGGAAGTA GGTGGTCGGG AAATGCGGGT TAGGTACTCT       45919
                          |||||| |||||||||| |||||||||| ||||||||||
.......... .......... ....GAAGTA GGTGGTCGGG AAATGCGGGT TAGGTACTCT         581


GTTGACATGA ATCCAGGAAC AAGAAGAAAC CCTGAAGTCT TGAACTCAAC TCCAAAGAAG       45859
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GTTGACATGA ATCCAGGAAC AAGAAGAAAC CCTGAAGTCT TGAACTCAAC TCCAAAGAAG         641


ATTCTGATGT ACGAAAGCCA ACACAAGGTC TATGTCGGAA ATCTCCCTTG GTTCACACAG       45799
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ATTCTGATGT ACGAAAGCCA ACACAAGGTC TATGTCGGAA ATCTCCCTTG GTTCACACAG         701


CCTGATGGTT TGAGAAACCA CTTTAGCAAG TTTGGCACAA TCGTAAGCAC GAGAGTGTTA       45739
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CCTGATGGTT TGAGAAACCA CTTTAGCAAG TTTGGCACAA TCGTAAGCAC GAGAGTGTTA         761


CATGATCGTA AGACCGGGAG AAACAGAGTC TTTGCCTTTC TTTCTTTTAC AAGCGGTGAA       45679
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CATGATCGTA AGACCGGGAG AAACAGAGTC TTTGCCTTTC TTTCTTTTAC AAGCGGTGAA         821


GAACGTGATG CGGCTTTATC ATTCAATGGA ACAGTTAAGT TCGTTATCCA TAAAAAGAAT       45619
|||||||||| |||||||||| |||||||||| |||                             
GAACGTGATG CGGCTTTATC ATTCAATGGA ACA....... .......... ..........         854


CTTGCTTGAG GAAACTTCTT CTACTGCTCT CTGGCTTTAT CACAATCTCT CTTTTGCAGC       45559
                                                                |
.......... .......... .......... .......... .......... .........C         855


AATATGAAGG TCGCAGAATC ATCGTCAGAG AAGGTATCGA GAAGAGTGAG TCGTAAACCA       45499
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AATATGAAGG TCGCAGAATC ATCGTCAGAG AAGGTATCGA GAAGAGTGAG TCGTAAACCA         915


ACTGTTCTGC TTTTGCTGCA AAGACATCTC TTGGACACAA ACAATGTGTA ATGAATGTCT       45439
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ACTGTTCTGC TTTTGCTGCA AAGACATCTC TTGGACACAA ACAATGTGTA ATGAATGTCT         975


TCTGATTTCT TCGACAAGTA ACCTTTACAT ATTATATCCT TCTCGATTTT GTTTATCACC       45379
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TCTGATTTCT TCGACAAGTA ACCTTTACAT ATTATATCCT TCTCGATTTT GTTTATCACC        1035


CATTATATCT ACCTGTATAA TTCTCTTTTC                                       45349
|||||||||| |||||||||| ||||||||||
CATTATATCT ACCTGTATAA TTCTCTTTTC                                        1065


********************************************************************************
EST Sequence: file=CeresTigr.gz, strand=+, description=24367

    1  ATTTGATCCG TTTATACTTG TTATTGGCAT TTCATCATCG TCTGGGATAA AAAAATGTCG
   61  ACAGTTGGAG AGCTTGCTTG CAGCTACGCT GTTATGATCC TCGAGGACGA GGGTATCGCT
  121  ATCACGGCTG ACAAAATCGC GACCTTGGTG AAAGCTGCTG GTGTTAGTAT TGAGTCATAC
  181  TGGCCAATGC TATTCGCCAA GATGGCTGAG AAACGTAACG TGACTGATCT CATCATGAAC
  241  GTTGGTGCTG GTGGTGGAGG TAGTGCTCCG GTTGCAGCTG CTGCTCCAGC TGCTGGCGGT
  301  GGTGCGGCAG CTGCTCCTGC TGCTGAGGAG AAGAAGAAGG ATGAGCCAGC AGAAGAGAGT
  361  GACGGAGATT TGGGTTTCGG TTTGTTTGAC TAAACGCAGT CACTTGTCTT TCTTCTTTGT
  421  AGTTGGATAT TGGAGACTAT ATTTTGTCGT ATGAGTTATT ATTACTTGTT TGATCTGGCT
  481  AAAGGACTAT TAGTTGGTTT ATGATGCGTA TGTTGTATAA CTCAAGTTTC CTAGCAAACC
  541  AATCGGCTCG GGCTTTTGTT

Genomic Template: file=NC_003070.fna.gz, strand=-, from=51408, to=49817, description=gi|42592260|ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence

Predicted gene structure:

 Exon  1    51108    51064 (  45 n);  cDNA      1     45 (  45 n); score: 1.000
  Intron  1    51063    50964 ( 100 n); Pd: 0.171 (s: 1.00), Pa: 0.999 (s: 1.00)
 Exon  2    50963    50883 (  81 n);  cDNA     46    126 (  81 n); score: 1.000
  Intron  2    50882    50632 ( 251 n); Pd: 0.998 (s: 1.00), Pa: 1.000 (s: 1.00)
 Exon  3    50631    50419 ( 213 n);  cDNA    127    339 ( 213 n); score: 0.995
  Intron  3    50418    50338 (  81 n); Pd: 0.937 (s: 1.00), Pa: 1.000 (s: 1.00)
 Exon  4    50337    50117 ( 221 n);  cDNA    340    560 ( 221 n); score: 1.000

MATCH	42592260-	24367+	0.998	560	1.000	C
PGS_42592260-_24367+	(51108  51064,50963  50883,50631  50419,50337  50117)

Alignment (genomic DNA sequence = upper lines):

ATTTGATCCG TTTATACTTG TTATTGGCAT TTCATCATCG TCTGGGTTGT TCGACTTACT       51049
|||||||||| |||||||||| |||||||||| |||||||||| |||||                
ATTTGATCCG TTTATACTTG TTATTGGCAT TTCATCATCG TCTGG..... ..........          45


CTAATTTTGG TTTAAAACGG ATTTAAAGTT TGTTTTTTTG TGAATAAGCA ATTAATCTAT       50989
                                                                 
.......... .......... .......... .......... .......... ..........          45


TGTTACTGTT TTTGAATCGT TTCAGGATAA AAAAATGTCG ACAGTTGGAG AGCTTGCTTG       50929
                           ||||| |||||||||| |||||||||| ||||||||||
.......... .......... .....GATAA AAAAATGTCG ACAGTTGGAG AGCTTGCTTG          80


CAGCTACGCT GTTATGATCC TCGAGGACGA GGGTATCGCT ATCACGGTAT CTTTCCTTTG       50869
|||||||||| |||||||||| |||||||||| |||||||||| ||||||               
CAGCTACGCT GTTATGATCC TCGAGGACGA GGGTATCGCT ATCACG.... ..........         126


ACTCCTGCTT GTCTATTTCT AAATCTTGAT TGGTCTCTTT GCTTTAGTCA GTAGGGTTTT       50809
                                                                 
.......... .......... .......... .......... .......... ..........         126


GGAACCGTTT CTTTTGACTT GATAGTTAGA AACTTAGTGA AAATGATTCT TATGGAGTGA       50749
                                                                 
.......... .......... .......... .......... .......... ..........         126


TAAGGATTTG GTATAGTATT ATTTGGTCAG GAATTGAACA AGTATTTTAT GTATCTGTCT       50689
                                                                 
.......... .......... .......... .......... .......... ..........         126


AAATGTGTTT TGAATTGGGT AAAGATCTTT ACTTGTGTTT GTTTATGTCG TTGATAGGCT       50629
                                                              |||
.......... .......... .......... .......... .......... .......GCT         129


GACAAAATCG CGACCTTGGT GAAAGCTGCT GGTGTTAGTA TTGAGTCATA CTGGCCAATG       50569
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GACAAAATCG CGACCTTGGT GAAAGCTGCT GGTGTTAGTA TTGAGTCATA CTGGCCAATG         189


CTATTCGCCA AGATGGCTGA GAAACGTAAC GTGACTGATC TCATCATGAA CGTTGGTGCT       50509
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTATTCGCCA AGATGGCTGA GAAACGTAAC GTGACTGATC TCATCATGAA CGTTGGTGCT         249


GGTGGTGGAG GTGGTGCTCC GGTTGCAGCT GCTGCTCCAG CTGCTGGCGG TGGTGCGGCA       50449
|||||||||| || ||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GGTGGTGGAG GTAGTGCTCC GGTTGCAGCT GCTGCTCCAG CTGCTGGCGG TGGTGCGGCA         309


GCTGCTCCTG CTGCTGAGGA GAAGAAGAAG GTAAATGAAA TAGCAACGAT AGACGAAATC       50389
|||||||||| |||||||||| ||||||||||                                 
GCTGCTCCTG CTGCTGAGGA GAAGAAGAAG .......... .......... ..........         339


ATTCTTCTAA CTAATAAGTG ATATAAAATT GATCTCATTT TGGTATTGCA GGATGAGCCA       50329
                                                        |||||||||
.......... .......... .......... .......... .......... .GATGAGCCA         348


GCAGAAGAGA GTGACGGAGA TTTGGGTTTC GGTTTGTTTG ACTAAACGCA GTCACTTGTC       50269
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GCAGAAGAGA GTGACGGAGA TTTGGGTTTC GGTTTGTTTG ACTAAACGCA GTCACTTGTC         408


TTTCTTCTTT GTAGTTGGAT ATTGGAGACT ATATTTTGTC GTATGAGTTA TTATTACTTG       50209
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TTTCTTCTTT GTAGTTGGAT ATTGGAGACT ATATTTTGTC GTATGAGTTA TTATTACTTG         468


TTTGATCTGG CTAAAGGACT ATTAGTTGGT TTATGATGCG TATGTTGTAT AACTCAAGTT       50149
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TTTGATCTGG CTAAAGGACT ATTAGTTGGT TTATGATGCG TATGTTGTAT AACTCAAGTT         528


TCCTAGCAAA CCAATCGGCT CGGGCTTTTG TT                                     50117
|||||||||| |||||||||| |||||||||| ||
TCCTAGCAAA CCAATCGGCT CGGGCTTTTG TT                                       560


********************************************************************************
EST Sequence: file=CeresTigr.gz, strand=+, description=148018

     1  ATTGGGATTT CATTTAGATA ATTTTTTTTT GGGTCTTGAT CTAAGTTTTG TTCTTTCTAA
    61  TTTGGTAAGG CAAGAAGAGC ATTAAGAGCA TTAAAAGGGT TAGTGAAGCT ACAAGCATTG
   121  GTGAGGGGAC ATAATGTGAG AAAGCAAGCT AAAATGACAT TAAGGTGTAT GCAAGCTCTG
   181  GTTCGAGTCC AGTCTCGTGT GCTTGACCAA CGCAAACGCT TGTCTCATGA CGGTAGTCGC
   241  AAATCCGCGT TCAGTGACTC TCACGCTGTT TTTGAATCTC GCTATCTTCA AGATTTGTCA
   301  GATCGACAAT CCATGTCAAG AGAAGGAAGC AGCGCCGCGG AAGATTGGGA TGACCGACCA
   361  CACACGATAG ACGCAGTGAA AGTGATGCTA CAACGGAGAC GGGACACAGC ATTGAGACAT
   421  GACAAGACTA ATTTGTCACA AGCTTTCTCT CAAAAGATGT GGAGGACGGT TGGTAACCAA
   481  TCCACGGAAG GACACCACGA GGTAGAACTT GAAGAGGAAA GGCCAAAATG GCTTGACCGG
   541  TGGATGGCTA CTAGACCGTG GGATAAACGA GCTAGTAGTA GAGCTTCGGT TGACCAAAGG
   601  GTTTCAGTTA AAACCGTTGA AATCGACACT TCTCAGCCTT ACTCAAGAAC AGGAGCAGGA
   661  AGCCCGAGTC GTGGCCAAAG ACCTAGTTCC CCATCAAGAA CTAGCCACCA TTACCAATCC
   721  CGCAATAATT TCTCAGCCAC TCCATCTCCG GCTAAGTCTA GACCAATACT TATTCGGTCA
   781  GCTAGTCCAC GGTGCCAGAG AGACCCGAGG GAAGACCGTG ACCGAGCAGC TTATAGTTAT
   841  ACATCAAACA CACCAAGCTT GAGATCCAAT TATAGTTTCA CAGCTAGGAG TGGATGTAGC
   901  ATTAGTACCA CAATGGTTAA TAATGCATCA TTGTTGCCTA ATTACATGGC GAGTACAGAG
   961  TCAGCTAAAG CGAGGATCCG GTCTCATAGT GCACCGAGGC AACGGCCCTC AACTHCCGAG
  1021  AGGGACCGTG CGGSTTTAGS CAAGAAACGR YTCTSGTATC CGGTACCACC GCCAGCGGAG
  1081  TATGAGGACA ATAATAGCTT AAGGAGTCCA AGCTTTAAGA GTGTGGCTGG TTCACATTTT
  1141  GGTGGAATGT TAGAGCAGCA ATCGAATTAC TCTTCATGTT GCACTGAGTC TAACGGTGTT
  1201  GAGATCTCTC CAGCTTCTAC TAGTGACTTT AGGAATTGGC TTAGATGATT GGTGGTGATG
  1261  CCAAATCAAC TGTCAAGATC TTTCATCATC CTCCAGGAAA AGAACGTTTT AAAATTTTAT
  1321  ATTCCAGAAG AAAACAAACA CTTTTATATT GTGTCGTTGA GGTTGATTTG TGTTTGGAAG
  1381  ATAAGTTTAT TGACCTATTG ATCTGTAACT TCATAAGATT TTGAAACGTT AGAAGATTC

Genomic Template: file=NC_003070.fna.gz, strand=+, from=52569, to=54985, description=gi|42592260|ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence

Predicted gene structure:

 Exon  1    52869    53183 ( 315 n);  cDNA      1    315 ( 315 n); score: 0.997
  Intron  1    53184    53483 ( 300 n); Pd: 0.985 (s: 1.00), Pa: 1.000 (s: 1.00)
 Exon  2    53484    53624 ( 141 n);  cDNA    316    456 ( 141 n); score: 1.000
  Intron  2    53625    53702 (  78 n); Pd: 0.998 (s: 1.00), Pa: 0.947 (s: 1.00)
 Exon  3    53703    54685 ( 983 n);  cDNA    457   1439 ( 983 n); score: 0.992

MATCH	42592260+	148018+	0.994	1439	1.000	C
PGS_42592260+_148018+	(52869  53183,53484  53624,53703  54685)

Alignment (genomic DNA sequence = upper lines):

ATTGGGATTT CATTTAGATA ATTTTTTTTT GGGTCTTGAT ATAAGTTTTG TTCTTTCTAA       52928
|||||||||| |||||||||| |||||||||| ||||||||||  ||||||||| ||||||||||
ATTGGGATTT CATTTAGATA ATTTTTTTTT GGGTCTTGAT CTAAGTTTTG TTCTTTCTAA          60


TTTGGTAAGG CAAGAAGAGC ATTAAGAGCA TTAAAAGGGT TAGTGAAGCT ACAAGCATTG       52988
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TTTGGTAAGG CAAGAAGAGC ATTAAGAGCA TTAAAAGGGT TAGTGAAGCT ACAAGCATTG         120


GTGAGGGGAC ATAATGTGAG AAAGCAAGCT AAAATGACAT TAAGGTGTAT GCAAGCTCTG       53048
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GTGAGGGGAC ATAATGTGAG AAAGCAAGCT AAAATGACAT TAAGGTGTAT GCAAGCTCTG         180


GTTCGAGTCC AGTCTCGTGT GCTTGACCAA CGCAAACGCT TGTCTCATGA CGGTAGTCGC       53108
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GTTCGAGTCC AGTCTCGTGT GCTTGACCAA CGCAAACGCT TGTCTCATGA CGGTAGTCGC         240


AAATCCGCGT TCAGTGACTC TCACGCTGTT TTTGAATCTC GCTATCTTCA AGATTTGTCA       53168
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AAATCCGCGT TCAGTGACTC TCACGCTGTT TTTGAATCTC GCTATCTTCA AGATTTGTCA         300


GATCGACAAT CCATGGTTAG TATAGCCTCC TAGGCCTTGC CTAAACTATA GCATAATCAA       53228
|||||||||| |||||                                                 
GATCGACAAT CCATG..... .......... .......... .......... ..........         315


TTGATATGTT TTTTAGTTAT AGACATGTTT TGCTTTTTAG TTTATTCATA AGGTTAAGCT       53288
                                                                 
.......... .......... .......... .......... .......... ..........         315


// intron part 53289 53408 (120 n) not shown                   //

//........ .......... .......... .......... .......... ........//


TTAATTGTAA ATTGCGTTTG TAATTTCATA TGGTGGCTAA CGTCTTTTGG AATTATGGTT       53468
                                                                 
.......... .......... .......... .......... .......... ..........         315


ATTTATTTGT TGTAGTCAAG AGAAGGAAGC AGCGCCGCGG AAGATTGGGA TGACCGACCA       53528
                ||||| |||||||||| |||||||||| |||||||||| ||||||||||
.......... .....TCAAG AGAAGGAAGC AGCGCCGCGG AAGATTGGGA TGACCGACCA         360


CACACGATAG ACGCAGTGAA AGTGATGCTA CAACGGAGAC GGGACACAGC ATTGAGACAT       53588
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CACACGATAG ACGCAGTGAA AGTGATGCTA CAACGGAGAC GGGACACAGC ATTGAGACAT         420


GACAAGACTA ATTTGTCACA AGCTTTCTCT CAAAAGGTAA AATTAATTAA ACCGGCATAT       53648
|||||||||| |||||||||| |||||||||| ||||||                          
GACAAGACTA ATTTGTCACA AGCTTTCTCT CAAAAG.... .......... ..........         456


AGTCTGTTAT ATATATTGAG CTTGTTGATA ACATCGTTTC GTTTCAATGG AAAGATGTGG       53708
                                                           ||||||
.......... .......... .......... .......... .......... ....ATGTGG         462


AGGACGGTTG GTAACCAATC CACGGAAGGA CACCACGAGG TAGAACTTGA AGAGGAAAGG       53768
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AGGACGGTTG GTAACCAATC CACGGAAGGA CACCACGAGG TAGAACTTGA AGAGGAAAGG         522


CCAAAATGGC TTGACCGGTG GATGGCTACT AGACCGTGGG ATAAACGAGC TAGTAGTAGA       53828
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CCAAAATGGC TTGACCGGTG GATGGCTACT AGACCGTGGG ATAAACGAGC TAGTAGTAGA         582


GCTTCGGTTG ACCAAAGGGT TTCAGTTAAA ACCGTTGAAA TCGACACTTC TCAGCCTTAC       53888
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GCTTCGGTTG ACCAAAGGGT TTCAGTTAAA ACCGTTGAAA TCGACACTTC TCAGCCTTAC         642


TCAAGAACAG GAGCAGGAAG CCCGAGTCGT GGCCAAAGAC CTAGTTCCCC ATCAAGAACT       53948
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TCAAGAACAG GAGCAGGAAG CCCGAGTCGT GGCCAAAGAC CTAGTTCCCC ATCAAGAACT         702


AGCCACCATT ACCAATCCCG CAATAATTTC TCAGCCACTC CATCTCCGGC TAAGTCTAGA       54008
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AGCCACCATT ACCAATCCCG CAATAATTTC TCAGCCACTC CATCTCCGGC TAAGTCTAGA         762


CCAATACTTA TTCGGTCAGC TAGTCCACGG TGCCAGAGAG ACCCGAGGGA AGACCGTGAC       54068
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CCAATACTTA TTCGGTCAGC TAGTCCACGG TGCCAGAGAG ACCCGAGGGA AGACCGTGAC         822


CGAGCAGCTT ATAGTTATAC ATCAAACACA CCAAGCTTGA GATCCAATTA TAGTTTCACA       54128
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CGAGCAGCTT ATAGTTATAC ATCAAACACA CCAAGCTTGA GATCCAATTA TAGTTTCACA         882


GCTAGGAGTG GATGTAGCAT TAGTACCACA ATGGTTAATA ATGCATCATT GTTGCCTAAT       54188
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GCTAGGAGTG GATGTAGCAT TAGTACCACA ATGGTTAATA ATGCATCATT GTTGCCTAAT         942


TACATGGCGA GTACAGAGTC AGCTAAAGCG AGGATCCGGT CTCATAGTGC ACCGAGGCAA       54248
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TACATGGCGA GTACAGAGTC AGCTAAAGCG AGGATCCGGT CTCATAGTGC ACCGAGGCAA        1002


CGGCCCTCAA CTCCCGAGAG GGACCGTGCG GGTTTGGTCA AGAAACGGCT CTCGTATCCG       54308
|||||||||| || ||||||| |||||||||| | ||| | || |||||||  | || |||||||
CGGCCCTCAA CTHCCGAGAG GGACCGTGCG GSTTTAGSCA AGAAACGRYT CTSGTATCCG        1062


GTACCACCGC CAGCGGAGTA TGAGGACAAT AATAGCTTAA GGAGTCCAAG CTTTAAGAGT       54368
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GTACCACCGC CAGCGGAGTA TGAGGACAAT AATAGCTTAA GGAGTCCAAG CTTTAAGAGT        1122


GTGGCTGGTT CACATTTTGG TGGAATGTTA GAGCAGCAAT CGAATTACTC TTCATGTTGC       54428
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GTGGCTGGTT CACATTTTGG TGGAATGTTA GAGCAGCAAT CGAATTACTC TTCATGTTGC        1182


ACTGAGTCTA ACGGTGTTGA GATCTCTCCA GCTTCTACTA GTGACTTTAG GAATTGGCTT       54488
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ACTGAGTCTA ACGGTGTTGA GATCTCTCCA GCTTCTACTA GTGACTTTAG GAATTGGCTT        1242


AGATGATTGG TGGTGATGCC AAATCAACTG TCAAGATCTT TCATCATCCT CCAGGAAAAG       54548
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AGATGATTGG TGGTGATGCC AAATCAACTG TCAAGATCTT TCATCATCCT CCAGGAAAAG        1302


AACGTTTTAA AATTTTATAT TCCAGAAGAA AACAAACACT TTTATATTGT GTCGTTGAGG       54608
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AACGTTTTAA AATTTTATAT TCCAGAAGAA AACAAACACT TTTATATTGT GTCGTTGAGG        1362


TTGAGTTGTG TTTGGAAGAT AAGTTTATTG ACCTATTGAT CTGTAACTTC ATAAGATTTT       54668
|||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TTGATTTGTG TTTGGAAGAT AAGTTTATTG ACCTATTGAT CTGTAACTTC ATAAGATTTT        1422


GAAACGTTAG AAGATTC                                                      54685
|||||||||| |||||||
GAAACGTTAG AAGATTC                                                       1439


********************************************************************************
EST Sequence: file=CeresTigr.gz, strand=+, description=16473

    1  AATCACCGCC GCTGAGACCG CCACTTTAGG CCGTCTCCTC CGTAATCTCC GTAACCAACA
   61  CCACCCGCAT CGCCTGCGAA TTGATCGGTG AGGTGGAAGA TGGAGTTTTG TCCCACATGT
  121  GGGAATCTGT TGCGCTACGA GGGAGGTGGG AGTTCGAGAT TCTTCTGTTC CACATGTCCA
  181  TACGTTGCCT ACATCGAAAG ACGGGTGGAG ATAAAGAAGA AGCAACTTCT GGTTAAGAAA
  241  TCTATAGAAC CTGTTGTGAC TAAAGATGAT ATACCCACAG CTGCTGAAAC AGAAGCTCCA
  301  TGTCCAAGGT GTGGCCACGA CAAGGCGTAC TTCAAATCAA TGCAGATTCG YTCAGCAGAT
  361  GAGCCAGAAT CAAGATTTTA TAGATGCTTG AAGTGCGAGT TCACTTGGCG TGAGGAATGA
  421  ACCGATGATC ATCACCTTCT CTGTACCCGC TAATTTTGCA ATCTTCTTTG AGTTTGTTTT
  481  ACCATTACAA AGTTTGTAGT TCCTCTATGT ACTCTGGTTC TTTCTGTCTC ACAGCTCAAG
  541  AGTTTCTGTA TTTAAAAGAA TCGATAAAAT TTTGGAATAT TGTGCAAAGT TTTAATTTTT
  601  GAGGTGAAGA ATGT

Genomic Template: file=NC_003070.fna.gz, strand=+, from=88648, to=89985, description=gi|42592260|ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence

Predicted gene structure:

 Exon  1    88954    89081 ( 128 n);  cDNA     77    204 ( 128 n); score: 0.922
  Intron  1    89082    89172 (  91 n); Pd: 0.994 (s: 0.94), Pa: 0.869 (s: 0.98)
 Exon  2    89173    89263 (  91 n);  cDNA    205    295 (  91 n); score: 0.978
  Intron  2    89264    89404 ( 141 n); Pd: 1.000 (s: 0.96), Pa: 0.999 (s: 0.96)
 Exon  3    89405    89681 ( 277 n);  cDNA    296    547 ( 252 n); score: 0.848

MATCH	42592260+	16473+	0.891	496	0.808	C
PGS_42592260+_16473+	(88954  89081,89173  89263,89405  89681)

Alignment (genomic DNA sequence = upper lines):

CGAATTGAAG GGTGTGGTGG AAGATGGAGT TTTGTCCAAC ATGTGGGAAT CTGTTGCGAT       89013
||||||||   |||| ||||| |||||||||| ||||||| || |||||||||| |||||||| |
CGAATTGATC GGTGAGGTGG AAGATGGAGT TTTGTCCCAC ATGTGGGAAT CTGTTGCGCT         136


ACGAGGGAGG TGGCAATTCG AGATTCTTCT GTTCCACATG TCCATACGTC GCCTACATCC       89073
|||||||||| ||| | |||| |||||||||| |||||||||| |||||||||  ||||||||| 
ACGAGGGAGG TGGGAGTTCG AGATTCTTCT GTTCCACATG TCCATACGTT GCCTACATCG         196


AAAGACAGGT TCTTTTTTCA ATTATATACC TTTTGAAAGT TTGTGAGCAA ACCGTTAAAA       89133
|||||| |                                                         
AAAGACGG.. .......... .......... .......... .......... ..........         204


TTCTCTCCTC TGTTCCTGAG TGCTTTGGAA TTTTGACAGG TGGAGATAAA GAAGAAGCAA       89193
                                          | |||||||||| ||||||||||
.......... .......... .......... .........G TGGAGATAAA GAAGAAGCAA         225


CTTCTGGTTA AGAAATCTAT AGAAGCTGTT GTGACTAAAG ATGATATACC CACAGCTGCT       89253
|||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| ||||||||||
CTTCTGGTTA AGAAATCTAT AGAACCTGTT GTGACTAAAG ATGATATACC CACAGCTGCT         285


GAAACTGAAG GTATTTTCAG TCTCTTGTCT TCTCTTCTTC TAATTTTAGG ACTGTGATGA       89313
||||| ||||                                                       
GAAACAGAAG .......... .......... .......... .......... ..........         295


GTTGGTTCAG AGTTGATCTC ACTTGGGGAA AGAGTAGAGT AGACTTTTGT TTCACTTTCT       89373
                                                                 
.......... .......... .......... .......... .......... ..........         295


TTCTCATGTT GGGATTGTTT GGTTTTAACA GCCCCATGTC CAAGGTGTGG CCACGACAAG       89433
                                  | ||||||| |||||||||| ||||||||||
.......... .......... .......... .CTCCATGTC CAAGGTGTGG CCACGACAAG         324


GCATACTTCA AATCAATGCA GATTCGTTCA GCAGATGAGC CAGAATCAAG ATTTTATAGA       89493
|| ||||||| |||||||||| |||||| ||| |||||||||| |||||||||| ||||||||||
GCGTACTTCA AATCAATGCA GATTCGYTCA GCAGATGAGC CAGAATCAAG ATTTTATAGA         384


TGCTTGAAGT GCGAGTTCAC TTGGCGTGAG GAATGAACTG ACTGATGATC ATCTTCTCCG       89553
|||||||||| |||||||||| |||||||||| ||||||||    | ||||||| |   || || 
TGCTTGAAGT GCGAGTTCAC TTGGCGTGAG GAATGAAC-- -C-GATGATC A---TCACCT         437


TCTCTTTGCC TCTGCCAATT TTGAAAGTTT CTACTTTTGC AACCTTCTTA GAGTTTGTTT       89613
||||| | ||  | | |      |   |       | |||||| || ||||||  ||||||||||
TCTCTGTACC -C-G-C---- -T---A---- --A-TTTTGC AATCTTCTTT GAGTTTGTTT         479


TACCATTGCA AATTTAGCAG ATCCTTTATG TACTCTGCTT CTTTCTGTCT CACAGCTCAA       89673
||||||| || || || | ||  |||| |||| ||||||| || |||||||||| ||||||||||
TACCATTACA AAGTTTGTAG TTCCTCTATG TACTCTGGTT CTTTCTGTCT CACAGCTCAA         539


TAGTTTCT                                                                89681
 |||||||
GAGTTTCT                                                                  547


********************************************************************************
EST Sequence: file=CeresTigr.gz, strand=+, description=31323

    1  AAGGTAAAAA AAAGCTTTGT GCAGAGAGAG AGAGAAGAAG AAAAATGGGT TTGCTTACGA
   61  ACAAGATTGA GAGAGAAGAG CTAAAGCCAG GAGATCACAT CTATACTTAC AGAGCAATCT
  121  TCGCTTATTC TCACCACGGA ATCTTTGTCG GTGGGTCCAA AGTTGTTCAT TTCAGACCTG
  181  AACACAACCC CATGGATTCA TCAACATCAT CAATATCATC ATCTTCCTCT GAAGATATCT
  241  GTTCCATATT TCCTGATTGC GGTTTCAGAC AACCGGACAG TGGAGTAGTC CTTTCTTGCT
  301  TAGACTGTTT CCTCAAGAAC GGCTCACTCT ACTGCTTCGA ATATGGAGTC AGTCCATCGG
  361  TTTTCCTAAC CAAAGTCCGC GGAGGGACTT GCACAACCGC GCAATCTGAT ACAACTGATT
  421  CAGTCATCCA CAGGGCAATG TACCTTCTCC AAAACGGATT TGGCAACTAC GACATTTTCA
  481  AGAACAACTG TGAGGATTTC GCGCTCTATT GCAAGACCGG TTTGCTTATA ATGGATAAGC
  541  TCGGTGTAGG GAGAAGCGGT CAAGCTTCTT CAATTGTTGG TGCTCCTTTG GCTGCACTCC
  601  TCTCTTCTCC TTCCAAATTG CTTATTCCAA GTCCCATTGG TGTGGCAACA GTTACTGCTG
  661  GTATGTACTG TATGAGTCGC TATGCTACCG ATATTGGTGT TAGAAGCGAC GTCATTAAGG
  721  TCTCAGTTGA GGATTTGGCT CTCAACCTTG ACGTAAAGAC CATTGAGCAA GGTGAAGAAG
  781  AAGAAGAAGA CGAAGAAGAA GATTCTGATA CCGACTATGT TAGGTGACAA ACAGATACCT
  841  ATCACCTTTG TTCACGAATT TCGATATACA TAAGAAAACA TTTCAGTTAG AATCCTCATG
  901  TTGGTTTTAT GTTCCCTTTA TTGCATTTGT TGGCCTATTT TCTGTCTGTA CAAAATGAAA
  961  ACGCAGACGT TTTGGTTTGG GT

Genomic Template: file=NC_003070.fna.gz, strand=+, from=95720, to=97697, description=gi|42592260|ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence

Predicted gene structure:

 Exon  1    96020    96157 ( 138 n);  cDNA      1    138 ( 138 n); score: 1.000
  Intron  1    96158    96553 ( 396 n); Pd: 0.975 (s: 1.00), Pa: 0.999 (s: 1.00)
 Exon  2    96554    97397 ( 844 n);  cDNA    139    982 ( 844 n); score: 0.999

MATCH	42592260+	31323+	0.999	982	1.000	C
PGS_42592260+_31323+	(96020  96157,96554  97397)

Alignment (genomic DNA sequence = upper lines):

AAGGTAAAAA AAAGCTTTGT GCAGAGAGAG AGAGAAGAAG AAAAATGGGT TTGCTTACGA       96079
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AAGGTAAAAA AAAGCTTTGT GCAGAGAGAG AGAGAAGAAG AAAAATGGGT TTGCTTACGA          60


ACAAGATTGA GAGAGAAGAG CTAAAGCCAG GAGATCACAT CTATACTTAC AGAGCAATCT       96139
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ACAAGATTGA GAGAGAAGAG CTAAAGCCAG GAGATCACAT CTATACTTAC AGAGCAATCT         120


TCGCTTATTC TCACCACGGT AACTTTAGAT TCATTCTTCC CAAGTTTGCT CCTTTCTTTC       96199
|||||||||| ||||||||                                              
TCGCTTATTC TCACCACG.. .......... .......... .......... ..........         138


TCGTTCATTC AATCATAACA TCAAAAAGTG AAATTATCCT CAATGCAAGT CTTTTCTTTT       96259
                                                                 
.......... .......... .......... .......... .......... ..........         138


// intron part 96260 96439 (180 n) not shown                   //

//........ .......... .......... .......... .......... ........//


AGATGATTTT TGTTTATTTG ACATATTTTT ATCCCAATTT CCTCTGGTGA TGAAGAATTG       96499
                                                                 
.......... .......... .......... .......... .......... ..........         138


ATACTGTTGT AGACATTCCT TCATGGGCTT TGATTTGATT GTGGATTTTT GCAGGAATCT       96559
                                                           ||||||
.......... .......... .......... .......... .......... ....GAATCT         144


TTGTCGGTGG GTCCAAAGTT GTTCATTTCA GACCTGAACA CAACCCCATG GATTCATCAA       96619
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TTGTCGGTGG GTCCAAAGTT GTTCATTTCA GACCTGAACA CAACCCCATG GATTCATCAA         204


CATCATCAAT ATCATCATCT TCCTCTGAAG ATATCTGTTC CATATTTCCT GATTGCGGTT       96679
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CATCATCAAT ATCATCATCT TCCTCTGAAG ATATCTGTTC CATATTTCCT GATTGCGGTT         264


TCAGACAACC GGACAGTGGA GTAGTCCTTT CTTGCTTAGA CTGTTTCCTC AAGAACGGCT       96739
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TCAGACAACC GGACAGTGGA GTAGTCCTTT CTTGCTTAGA CTGTTTCCTC AAGAACGGCT         324


CACTCTACTG CTTCGAATAT GGAGTCAGTC CATCGGTTTT CCTAACCAAA GTCCGCGGAG       96799
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CACTCTACTG CTTCGAATAT GGAGTCAGTC CATCGGTTTT CCTAACCAAA GTCCGCGGAG         384


GGACTTGCAC AACCGCGCAA TCTGATACAA CTGATTCAGT CATCCACAGG GCAATGTACC       96859
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GGACTTGCAC AACCGCGCAA TCTGATACAA CTGATTCAGT CATCCACAGG GCAATGTACC         444


TTCTCCAAAA CGGATTTGGC AACTACGACA TTTTCAAGAA CAACTGTGAG GATTTCGCGC       96919
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TTCTCCAAAA CGGATTTGGC AACTACGACA TTTTCAAGAA CAACTGTGAG GATTTCGCGC         504


TCTATTGCAA GACCGGTTTG CTTATAATGG ATAAGCTCGG TGTAGGGAGA AGCGGTCAAG       96979
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TCTATTGCAA GACCGGTTTG CTTATAATGG ATAAGCTCGG TGTAGGGAGA AGCGGTCAAG         564


CTTCTTCAAT TGTTGGTGCT CCTTTGGCTG CACTCCTCTC TTCTCCTTTC AAATTGCTTA       97039
|||||||||| |||||||||| |||||||||| |||||||||| |||||||| | ||||||||||
CTTCTTCAAT TGTTGGTGCT CCTTTGGCTG CACTCCTCTC TTCTCCTTCC AAATTGCTTA         624


TTCCAAGTCC CATTGGTGTG GCAACAGTTA CTGCTGGTAT GTACTGTATG AGTCGCTATG       97099
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TTCCAAGTCC CATTGGTGTG GCAACAGTTA CTGCTGGTAT GTACTGTATG AGTCGCTATG         684


CTACCGATAT TGGTGTTAGA AGCGACGTCA TTAAGGTCTC AGTTGAGGAT TTGGCTCTCA       97159
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTACCGATAT TGGTGTTAGA AGCGACGTCA TTAAGGTCTC AGTTGAGGAT TTGGCTCTCA         744


ACCTTGACGT AAAGACCATT GAGCAAGGTG AAGAAGAAGA AGAAGACGAA GAAGAAGATT       97219
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ACCTTGACGT AAAGACCATT GAGCAAGGTG AAGAAGAAGA AGAAGACGAA GAAGAAGATT         804


CTGATACCGA CTATGTTAGG TGACAAACAG ATACCTATCA CCTTTGTTCA CGAATTTCGA       97279
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTGATACCGA CTATGTTAGG TGACAAACAG ATACCTATCA CCTTTGTTCA CGAATTTCGA         864


TATACATAAG AAAACATTTC AGTTAGAATC CTCATGTTGG TTTTATGTTC CCTTTATTGC       97339
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TATACATAAG AAAACATTTC AGTTAGAATC CTCATGTTGG TTTTATGTTC CCTTTATTGC         924


ATTTGTTGGC CTATTTTCTG TCTGTACAAA ATGAAAACGC AGACGTTTTG GTTTGGGT         97397
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||
ATTTGTTGGC CTATTTTCTG TCTGTACAAA ATGAAAACGC AGACGTTTTG GTTTGGGT           982


********************************************************************************
EST Sequence: file=CeresTigr.gz, strand=+, description=13874

    1  AAAAATTAAA CCAAAGAAAC AAACAATCCT TGTTCTCGCC GAAATAGAGA ATTTTGTGAA
   61  TCTGGGTTTT TAGTTCAGGT GTTAATATAA GATTTTGATC AAAAGAAGAC GAGATTCGAT
  121  CCGATCCGAT CTGATTGAAG AAGAAATGGC GAATCTGTAT GTGAAAGCGG TTCCACCACC
  181  GGATATGAAT AGGAATACGG AATGGTTCAT GTATCCATGA GTTTGGACGA CTTACATGCT
  241  TATTCTCTTC TTCGGTTGGC TCGTTGTTCT CTCTGTCTCT GGTTGTTCCC CTGGAATGGC
  301  TTGGACTGTT GTTAATCTCG CTCACTTCGT TGTAACGTAT CACAGCTTCC ACTGGATGAA
  361  AGGAACTCCT TTTGCAGATG ACCAAGGAAT CTACAATGGT TTAACTTGGT GGGAACAAAT
  421  GGACAATGGT CAACAGCTTA CCCGCAACCG CAAATTTCTT ACCCTAGTTC CTGTTGTTCT
  481  GTACTTGATT GCATCGCATA CAACAGATTA CAGACATCCA TGGCTGTTCC TCAACACACT
  541  CGCTGTGATG GTTCTCGTTG TTGCCAAGTT CCCTAACATG CACAAGGTAC GCATCTTTGG
  601  TATCAATGGT GATAAATAAG TTTCCTTTAC GGCAAGAGAA CACCTGAAAG AAGGAAAAGG
  661  GGATATAAGC GAACATATAT ATGTGTAAAT GTTCATATGA GTTGGTTTAA TTCTCGAGTC
  721  ATGTTTTTTG TTGGATATTT GTAAGTAAAC TCTCTAATTT TGAAGCTTTC ATCTTTTACC
  781  TTTTATAATA GACACGAAAA AGCTTTCCCT CC

Genomic Template: file=NC_003070.fna.gz, strand=+, from=97176, to=99539, description=gi|42592260|ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence

Predicted gene structure:

 Exon  1    97475    97805 ( 331 n);  cDNA      1    331 ( 331 n); score: 0.994
  Intron  1    97806    98456 ( 651 n); Pd: 0.921 (s: 1.00), Pa: 0.992 (s: 1.00)
 Exon  2    98457    98605 ( 149 n);  cDNA    332    480 ( 149 n); score: 1.000
  Intron  2    98606    98907 ( 302 n); Pd: 0.992 (s: 1.00), Pa: 0.995 (s: 1.00)
 Exon  3    98908    99239 ( 332 n);  cDNA    481    812 ( 332 n); score: 0.994

MATCH	42592260+	13874+	0.995	812	1.000	C
PGS_42592260+_13874+	(97475  97805,98457  98605,98908  99239)

Alignment (genomic DNA sequence = upper lines):

CAAAATTAAA CCAAAGAAAC AAACAATCCT TGTTCTCGCC GAAATAGAGA ATTTTGTGAA       97534
 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AAAAATTAAA CCAAAGAAAC AAACAATCCT TGTTCTCGCC GAAATAGAGA ATTTTGTGAA          60


TCTGGGTTTT TAGTTCAGGT GTTAATATAA GATTTTGATC AAAAGAAGAC GAGATTCGAT       97594
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TCTGGGTTTT TAGTTCAGGT GTTAATATAA GATTTTGATC AAAAGAAGAC GAGATTCGAT         120


CCGATCCGAT CTGATTGAAG AAGAAATGGC GAATCTGTAT GTGAAAGCGG TTCCACCACC       97654
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CCGATCCGAT CTGATTGAAG AAGAAATGGC GAATCTGTAT GTGAAAGCGG TTCCACCACC         180


GGATATGAAT AGGAATACGG AATGGTTCAT GTATCCAGGA GTTTGGACGA CTTACATGCT       97714
|||||||||| |||||||||| |||||||||| ||||||| || |||||||||| ||||||||||
GGATATGAAT AGGAATACGG AATGGTTCAT GTATCCATGA GTTTGGACGA CTTACATGCT         240


TATTCTCTTC TTCGGTTGGC TCGTTGTTCT CTCTGTCTCT GGTTGTTCCC CTGGAATGGC       97774
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TATTCTCTTC TTCGGTTGGC TCGTTGTTCT CTCTGTCTCT GGTTGTTCCC CTGGAATGGC         300


TTGGACTGTT GTTAATCTCG CTCACTTCGT TGTAAGTCTT CGATTGTGTT TATGCTTTAG       97834
|||||||||| |||||||||| |||||||||| |                               
TTGGACTGTT GTTAATCTCG CTCACTTCGT T......... .......... ..........         331


AGATGATTTT TTCACTTAGG GTTGTGACTT TAAATTAGAT GATGGATTGA TTCCTTGTTT       97894
                                                                 
.......... .......... .......... .......... .......... ..........         331


// intron part 97895 98374 (480 n) not shown                   //

//........ .......... .......... .......... .......... ........//


AAAACCAAAT TTAATCTAAT TTCTAATTAC TCTTTAGGAA AATGTGATGT CTGAGTAGAA       98434
                                                                 
.......... .......... .......... .......... .......... ..........         331


ATTTGTGGAT ATTTGTTGTC AGGTAACGTA TCACAGCTTC CACTGGATGA AAGGAACTCC       98494
                        |||||||| |||||||||| |||||||||| ||||||||||
.......... .......... ..GTAACGTA TCACAGCTTC CACTGGATGA AAGGAACTCC         369


TTTTGCAGAT GACCAAGGAA TCTACAATGG TTTAACTTGG TGGGAACAAA TGGACAATGG       98554
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TTTTGCAGAT GACCAAGGAA TCTACAATGG TTTAACTTGG TGGGAACAAA TGGACAATGG         429


TCAACAGCTT ACCCGCAACC GCAAATTTCT TACCCTAGTT CCTGTTGTTC TGTAAGTCCC       98614
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |         
TCAACAGCTT ACCCGCAACC GCAAATTTCT TACCCTAGTT CCTGTTGTTC T.........         480


AGCACCTTGT TCCTCAAAAT CTCACCACTC TTGTCTATTT CCAATCTATA TTTTCTTAGC       98674
                                                                 
.......... .......... .......... .......... .......... ..........         480


// intron part 98675 98794 (120 n) not shown                   //

//........ .......... .......... .......... .......... ........//


ATACGCGATA ATGTGTATAA ACAAGAGCTG CATTTATCTG GATGAACTTT TAAGATTGAG       98854
                                                                 
.......... .......... .......... .......... .......... ..........         480


CTCTTTAGCT TTTGTACTTG TTTTCTGACT TTATAACGAC ACATTTAAAA CAGGTACTTG       98914
                                                          |||||||
.......... .......... .......... .......... .......... ...GTACTTG         487


ATTGCATCGC ATACAACAGA TTACAGACAT CCATGGCTGT TCCTCAACAC ACTCGCTGTG       98974
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ATTGCATCGC ATACAACAGA TTACAGACAT CCATGGCTGT TCCTCAACAC ACTCGCTGTG         547


ATGGTTCTCG TTGTTGCCAA GTTCCCCAAC ATGCACAAGG TACGCATCTT TGGTATCAAT       99034
|||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| ||||||||||
ATGGTTCTCG TTGTTGCCAA GTTCCCTAAC ATGCACAAGG TACGCATCTT TGGTATCAAT         607


GGTGATAAAT AAGTTTCCTT TACGGCAAGA GAACACCTGA AAGAAGGAAA AGGGGATATA       99094
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GGTGATAAAT AAGTTTCCTT TACGGCAAGA GAACACCTGA AAGAAGGAAA AGGGGATATA         667


AGCGAACATA TATATGTGTA AATGTTCATA TGAGTTGGTT TAATTCTCGA GTCATGTTTT       99154
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AGCGAACATA TATATGTGTA AATGTTCATA TGAGTTGGTT TAATTCTCGA GTCATGTTTT         727


TTGTTGGATA TTTGTAAGTA AACTCTCTAA TTTTGAAGCT TTCATCTTTT ACCTTTTATA       99214
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TTGTTGGATA TTTGTAAGTA AACTCTCTAA TTTTGAAGCT TTCATCTTTT ACCTTTTATA         787


ATAGACACGA AAAAGCTTTC CCTTC                                             99239
|||||||||| |||||||||| ||| |
ATAGACACGA AAAAGCTTTC CCTCC                                               812


********************************************************************************
EST Sequence: file=CeresTigr.gz, strand=+, description=34178

     1  ATTTGTTTCT AGAGTGATTC ATGGATTCTT TAAACTACTA ATAATGGATT TTTGTTGTGT
    61  CTTAATGAAA TAATGGGAGC AGCTGAAGCA AGAGCATTGT GGCAAAGAAC AGCTAGTCGT
   121  TGCTTTGTTG TTCATGAGGA TGCTAAGATG GCTCCGAGGT TAGCTTGTTG CCAACACCAA
   181  CAATCTTCTT CGGGCAACAC CGAAAAAAAC AGCTTTTCTT CGGGAAGTTT TGGAGATTCC
   241  TCTGATTTCT CTTGTGATAC CAAATGGTGG CTTAAGGGAT CAACTGGATT TGATGAGGAG
   301  GTTACAAACT CCTTTCTTGA AGATACCAAA TGCAAGAAAT TGCATGAATT TGTCGACTTA
   361  ATCGGAATAC GAGAAGAAGA AGACTACAGC TTTATTAGCA AGAAAGCTGA CGCTACAACA
   421  CCGTGGTGGA GAAGCACGAC GGATAAAGAT GAATTAGCTC TCATGGTGGC GACTAAATCG
   481  GTTGATCATA ATATCCAGAA TTGTGATCTT CCTCCACCTC AAAAACTCCA CAAGAGTATT
   541  CACTCCTCGA GTGGAGAAAA AGGGTTTAAA ACAGCGGTTA AATCGCCATG GAAGCAAGGA
   601  GTTTGGAAGG ATCGGTTTGA GAGATCTTTG AGTTACAATG GTAGCACAGA GAGCAAGAAC
   661  ACGAGTCCAA TGTCTTCCCC TAGAAGTGAT GATCTAAGCA AAGGTCAGCT TTTAGAAGCA
   721  CTAAGGCATT CTCAAACCAG GGCAGGAGAA GCAGAGAGAG CAGCGAGAGA AGCTTGCGCT
   781  GAGAAAGACC GTGTGATAAC AATCTTGTTG AAACAAGCGA GTCAGATGTT GGCTTATAAG
   841  CAATGGTTAA AGCTTCTTGA AATGGAAGCT CTTTATCTGC AGATGAAGAA GGAAGAAGAA
   901  CAAGAGGAAC AGGTCAAAGG AATGAATCTG AAGAAGAGAA AACAGAGAGG GGAGAAGAAG
   961  AAAAAGGGTG AGACTGGGAG ATATATGATG GCTTTTGCAT TAGGGTTTAG TCTCATTGGT
  1021  GCTGGTTTGC TCTTAGGTTG GACTGTTGGA TGGYTGCTTC CCTTCTAGAA TCTTGAAATG
  1081  TCTTCTCTTT GGTCACTCAT CTTTTCAAGA GTTTTAGGTT TTATAACTTT TCACTTTACC
  1141  TCTAAAATTG TGTGTATATT TTGTTAATGT ATGTATTGTG TGATGTTTGT GC

Genomic Template: file=NC_003070.fna.gz, strand=+, from=99686, to=102101, description=gi|42592260|ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence

Predicted gene structure:

 Exon  1    99986   100031 (  46 n);  cDNA      1     46 (  46 n); score: 1.000
  Intron  1   100032   100656 ( 625 n); Pd: 0.900 (s: 1.00), Pa: 0.992 (s: 1.00)
 Exon  2   100657   101802 (1146 n);  cDNA     47   1192 (1146 n); score: 0.996

MATCH	42592260+	34178+	0.996	1192	1.000	C
PGS_42592260+_34178+	(99986  100031,100657  101802)

Alignment (genomic DNA sequence = upper lines):

ATTTGTTTCT AGAGTGATTC ATGGATTCTT TAAACTACTA ATAATGGTAT CTTTAGTTGT      100045
|||||||||| |||||||||| |||||||||| |||||||||| ||||||               
ATTTGTTTCT AGAGTGATTC ATGGATTCTT TAAACTACTA ATAATG.... ..........          46


TACTTCGTTT TCTGATCTAT TTTACAAATC TTACTCTTTT GCTCTGTTTT CGTGGTTTTG      100105
                                                                 
.......... .......... .......... .......... .......... ..........          46


// intron part 100106 100585 (480 n) not shown                 //

//........ .......... .......... .......... .......... ........//


ATTACAGGAT CTGGGTGAAA AAAGAACAGT CTTTTGATTT GGTGTGTTTC TCTTTTCTCT      100645
                                                                 
.......... .......... .......... .......... .......... ..........          46


TAATTTTTTA GGATTTTTGT TGTGTCTTAA TGAAATAATG GGAGCAGCTG AAGCAAGAGC      100705
            ||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
.......... .GATTTTTGT TGTGTCTTAA TGAAATAATG GGAGCAGCTG AAGCAAGAGC          95


ATTGTGGCAA AGAACAGCTA GTCGTTGCTT TGTTGTTCAT GAGGATGCTA AGATGGCTCC      100765
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ATTGTGGCAA AGAACAGCTA GTCGTTGCTT TGTTGTTCAT GAGGATGCTA AGATGGCTCC         155


GAGGTTAGCT TGTTGCCAAC ACCAACAATC TTCTTCGGGC AACACCGAAA AAAACAGCTT      100825
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GAGGTTAGCT TGTTGCCAAC ACCAACAATC TTCTTCGGGC AACACCGAAA AAAACAGCTT         215


TTCTTCCGGA AGTTTTGGAG ATTCCTCTGA TTTCTCTTGT GATACCAAAT GGTGGCTTAA      100885
|||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TTCTTCGGGA AGTTTTGGAG ATTCCTCTGA TTTCTCTTGT GATACCAAAT GGTGGCTTAA         275


GGGATCAACT GGTTTTGATG AGGAGGTTAC AAACTCCTTT CTTGAAGATA CCAAATGCAA      100945
|||||||||| || ||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GGGATCAACT GGATTTGATG AGGAGGTTAC AAACTCCTTT CTTGAAGATA CCAAATGCAA         335


GAAATTGCAT GAATTTGTCG ACTTAATCGG AATACGAGAA GAAGAAGACT ACAGCTTTAT      101005
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GAAATTGCAT GAATTTGTCG ACTTAATCGG AATACGAGAA GAAGAAGACT ACAGCTTTAT         395


TAGCAAGAAA GCTGACGCTA CAACACCGTG GTGGAGAAGC ACGACGGATA AAGATGAATT      101065
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TAGCAAGAAA GCTGACGCTA CAACACCGTG GTGGAGAAGC ACGACGGATA AAGATGAATT         455


AGCTCTCATG GTGGCGACTA AATCGGTTGA TCATAATATC CAGAATTGTG ATCTTCCTCC      101125
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AGCTCTCATG GTGGCGACTA AATCGGTTGA TCATAATATC CAGAATTGTG ATCTTCCTCC         515


ACCTCAAAAA CTCCACAAGA GTATTCACTC CTCGAGTGGA GAAAAAGGGT TTAAAACAGC      101185
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ACCTCAAAAA CTCCACAAGA GTATTCACTC CTCGAGTGGA GAAAAAGGGT TTAAAACAGC         575


GGTTAAATCG CCATGGAAGC AAGGAGTTTG GAAGGATCGG TTTGAGAGAT CTTTGAGTTA      101245
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GGTTAAATCG CCATGGAAGC AAGGAGTTTG GAAGGATCGG TTTGAGAGAT CTTTGAGTTA         635


CAATGGTAGC ACAGAGAGCA AGAACACGAG TCCAATGTCT TCCCCTAGAA GTGATGATCT      101305
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CAATGGTAGC ACAGAGAGCA AGAACACGAG TCCAATGTCT TCCCCTAGAA GTGATGATCT         695


AAGCAAAGGT CAGCTTTTAG AAGCACTAAG GCATTCTCAA ACCAGGGCAA GAGAAGCAGA      101365
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||  ||||||||||
AAGCAAAGGT CAGCTTTTAG AAGCACTAAG GCATTCTCAA ACCAGGGCAG GAGAAGCAGA         755


GAGAGCAGCG AGAGAAGCTT GCGCTGAGAA AGACCGTGTG ATAACAATCT TGTTGAAACA      101425
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GAGAGCAGCG AGAGAAGCTT GCGCTGAGAA AGACCGTGTG ATAACAATCT TGTTGAAACA         815


AGCGAGTCAG ATGTTGGCTT ATAAGCAATG GTTAAAGCTT CTTGAAATGG AAGCTCTTTA      101485
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AGCGAGTCAG ATGTTGGCTT ATAAGCAATG GTTAAAGCTT CTTGAAATGG AAGCTCTTTA         875


TCTGCAGATG AAGAAGGAAG AAGAACAAGA GGAACAGGTC AAAGGAATGA ATCTGAAGAA      101545
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TCTGCAGATG AAGAAGGAAG AAGAACAAGA GGAACAGGTC AAAGGAATGA ATCTGAAGAA         935


GAGAAAACAG AGAGGGGAGA AGAAGAAAAA GGGTGAGACT GGGAGATATA TGATGGCTTT      101605
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GAGAAAACAG AGAGGGGAGA AGAAGAAAAA GGGTGAGACT GGGAGATATA TGATGGCTTT         995


TGCATTAGGG TTTAGTCTCA TTGGTGCTGG TTTGCTCTTA GGTTGGACTG TTGGATGGTT      101665
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| |
TGCATTAGGG TTTAGTCTCA TTGGTGCTGG TTTGCTCTTA GGTTGGACTG TTGGATGGYT        1055


GCTTCCCTTC TAGAATCTTG AAATGTCTTC TCTTTGGTCA CTCATCTTTT CAAGAGTTTT      101725
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GCTTCCCTTC TAGAATCTTG AAATGTCTTC TCTTTGGTCA CTCATCTTTT CAAGAGTTTT        1115


AGGTTTTATA ACTTTTCACT TTACCTCTAA AATTGTGTGT ATATTTTGTT AATGTATGTA      101785
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AGGTTTTATA ACTTTTCACT TTACCTCTAA AATTGTGTGT ATATTTTGTT AATGTATGTA        1175


TTGTGTGATG TTTGTGT                                                     101802
|||||||||| |||||| 
TTGTGTGATG TTTGTGC                                                       1192


********************************************************************************
EST Sequence: file=CeresTigr.gz, strand=+, description=25524

    1  AGAAAAATAA CAAACTCTTT AATGTCACCA CAGAGAATGA AGCTATCACC ACCACCAGTT
   61  ACCAACAACG AACCAACCGC CACCGCTTCT GCCGTTAAAT CTTGCGGCGG AGGAGGTAAA
  121  GAAACCAGCT CATCGACCAC GAGGCATCCA GTGTACCACG GAGTTCGCAA ACGCCGATGG
  181  GGAAAATGGG TTTCAGAGAT CAGAGAGCCC CGGAAAAAGT CTCGGATTTG GCTCGGATCT
  241  TTTCCGGTGC CGGAGATGGC TGCTAAAGCC TACGACGTGG CAGCGTTTTG TCTAAAAGGT
  301  AGAAAAGCTC AGCTGAATTT CCCTGAAGAA ATCGAGGATC TACCTCGACC GTCCACGTGT
  361  ACTCCCAGAG ATATCCAAGT CGCAGCGGCC AAAGCAGCCA ACGCCGTGAA GATCATCAAA
  421  ATGGGAGATG ATGACGTGGC AGGAATAGAC GACGGAGATG ATTTCTGGGA AGGCATTGAG
  481  CTGCCTGAGC TTATGATGAC TGGAGGTGGG TGGTCGCCGG AGCCTTTTGT TGCCGGAGAT
  541  GATGCCACGT GGCTTGTCGA CGGAGACTTG TATCAGTATC AGTTCATGGC GTGTCTGTGA
  601  GTGTTGCTGT CGATTGTGTC GTATTCGTTA TACGTGTACG TTGTATCGTT ATTGTGTTGG
  661  CTCACTTAAT TTAATGCATA TGCATGTATA TTTTCATTTA TTTGTTTCTA GTTTATTGTT
  721  TTACGCGATT AATAATTAGA TACCTGTTTC TCAAGTTAGT TATCAGGTTT GTACGCATCT
  781  ACAAAAATAC GTATAAGTGT ATGTTCTTAT ATACAGTTTT TGTTTGCATA AGC

Genomic Template: file=NC_003070.fna.gz, strand=-, from=105626, to=104199, description=gi|42592260|ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence

Predicted gene structure:

 Exon  1   105330   104498 ( 833 n);  cDNA      1    833 ( 833 n); score: 0.989

MATCH	42592260-	25524+	0.989	833	1.000	C
PGS_42592260-_25524+	(105330  104498)

Alignment (genomic DNA sequence = upper lines):

AACCACATAA CAAACTCTTT AATGTCACCA CAGAGAATGA AGCTATCATC ACCACCAGTT      105271
|   | |||| |||||||||| |||||||||| |||||||||| |||||||| | ||||||||||
AGAAAAATAA CAAACTCTTT AATGTCACCA CAGAGAATGA AGCTATCACC ACCACCAGTT          60


ACCAACAACG AACCAACCGC CACCGCTTCT GCCGTTAAAT CTTGCGGCGG AGGAGGTAAA      105211
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ACCAACAACG AACCAACCGC CACCGCTTCT GCCGTTAAAT CTTGCGGCGG AGGAGGTAAA         120


GAAACCAGCT CATCGACCAC GAGGCATCCA GTGTACCACG GAGTTCGCAA ACGCCGATGG      105151
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GAAACCAGCT CATCGACCAC GAGGCATCCA GTGTACCACG GAGTTCGCAA ACGCCGATGG         180


GGAAAATGGG TTTCTGAGAT CAGAGAGCCC CGGAAAAAGT CTCGGATTTG GCTCGGATCT      105091
|||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| ||||||||||
GGAAAATGGG TTTCAGAGAT CAGAGAGCCC CGGAAAAAGT CTCGGATTTG GCTCGGATCT         240


TTTCCGGTGC CGGAGATGGC TGCTAAGGCC TACGACGTGG CAGCGTTTTG TCTAAAAGGT      105031
|||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| ||||||||||
TTTCCGGTGC CGGAGATGGC TGCTAAAGCC TACGACGTGG CAGCGTTTTG TCTAAAAGGT         300


AGAAAAGCTC AGCTGAATTT CCCTGAAGAA ATCGAGGATC TACCTCGACC GTCCACGTGT      104971
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AGAAAAGCTC AGCTGAATTT CCCTGAAGAA ATCGAGGATC TACCTCGACC GTCCACGTGT         360


ACTCCCAGAG ATATCCAAGT CGCAGCGGCC AAAGCAGCCA ACGCCGTGAA GATCATCAAA      104911
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ACTCCCAGAG ATATCCAAGT CGCAGCGGCC AAAGCAGCCA ACGCCGTGAA GATCATCAAA         420


ATGGGAGATG ATGACGTGGC AGGAATAGAC GACGGAGATG ATTTCTGGGA AGGCATTGAG      104851
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ATGGGAGATG ATGACGTGGC AGGAATAGAC GACGGAGATG ATTTCTGGGA AGGCATTGAG         480


CTGCCTGAGC TTATGATGAG TGGAGGTGGG TGGTCGCCGG AGCCTTTTGT TGCCGGAGAT      104791
|||||||||| |||||||||  |||||||||| |||||||||| |||||||||| ||||||||||
CTGCCTGAGC TTATGATGAC TGGAGGTGGG TGGTCGCCGG AGCCTTTTGT TGCCGGAGAT         540


GATGCCACGT GGCTTGTCGA CGGAGACTTG TATCAGTATC AGTTCATGGC GTGTCTGTGA      104731
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GATGCCACGT GGCTTGTCGA CGGAGACTTG TATCAGTATC AGTTCATGGC GTGTCTGTGA         600


GTGTTGCTGT CGATTGTGTC GTATTCGTTA TACGTGTACG TTGTATCGTT ATTGTGTTGG      104671
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GTGTTGCTGT CGATTGTGTC GTATTCGTTA TACGTGTACG TTGTATCGTT ATTGTGTTGG         660


CTCACTTAAT TTAATGCATA TGCATGTATA TTTTCATTTA TTTGTTTCTA GTTTATTGTT      104611
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTCACTTAAT TTAATGCATA TGCATGTATA TTTTCATTTA TTTGTTTCTA GTTTATTGTT         720


TTACGCGATT AATAATTAGA TACCTGTTTC TCAAGTTAGT TATCAGGTTT GTACGCATCT      104551
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TTACGCGATT AATAATTAGA TACCTGTTTC TCAAGTTAGT TATCAGGTTT GTACGCATCT         780


ACAAAAATAC GTATAAGTGT ATGTTCTTAT ATACAGTTTT TGTTTGCATA AGT             104498
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || 
ACAAAAATAC GTATAAGTGT ATGTTCTTAT ATACAGTTTT TGTTTGCATA AGC                833


********************************************************************************
EST Sequence: file=CeresTigr.gz, strand=+, description=7567

     1  ACTCGCCACT TTCCTCGAGA AAACGAAAAA AAAAGATGGT AGGAAGAAGA AAAGCTTTAC
    61  TCTTTTCTCT CTGTTTCTTC TTCCTCTCTC TTCCTTCCTT CTCTTCCCTT CCATCCTTCC
   121  AAACCCTATT CCCCAATTCT CATTCCCTTC CTTGTGCTTC TCCCGTCTCC TTCCAACCCG
   181  ACTCCGACTC CGAGTCACTG CTAGAATCCG AATTTGAATC CGGATCCGAC TCCGAGTCTT
   241  CTTCTTCCAT TACTCTAAAC CTCGACCACA TCGATGCTCT CTCCTCCAAC AAAACACCTC
   301  AAGAGCTATT CAGCTCCCGT CTCCAACGTG ACTCCCGGCG CGTGAGATCA ATCGCCACAC
   361  TCGCCGCTCA AATCCCCGGA AGAAACGTGA CTCACGCGCC ACGACCCGGT GGATTCAGCA
   421  GCTCAGTCGT CTCTGGTCTC TCTCAAGGAA GCGGTGAATA CTTCACGCGC CTCGGTGTCG
   481  GTACTCCGGC GAGATATGTT TACATGGTGC TCGACACCGG CAGCGACATC GTCTGGCTAC
   541  AATGCGCTCC TTGTCGGAGA TGTTACTCTC AATCCGACCC GATATTCGAC CCGAGAAAAT
   601  CCAAGACCTA TGCCACAATC CCCTGTTCTT CACCTCACTG CCGCCGATTA GACTCCGCCG
   661  GATGCAACAC CCGTCGTAAG ACTTGTCTCT ACCAAGTCTC TTACGGAGAT GGTTCTTTCA
   721  CCGTCGGCGA TTTCTCCACC GAAACGCTAA CTTTCCGGCG AAATCGCGTT AAAGGCGTTG
   781  CTCTCGGATG TGGCCACGAC AACGAAGGTC TCTTCGTCGG AGCCGCCGGT TTATTAGGAC
   841  TCGGTAAAGG TAAATTATCG TTCCCCGGTC AAACCGGTCA CCGGTTTAAT CAGAAATTCT
   901  CTTACTGTTT AGTCGACAGA TCCGCTTCTT CGAAACCTTC CTCGGTCGTC TTCGGAAACG
   961  CCGCCGTTTC ACGAATCGCG AGATTCACGC CACTTTTGTC AAACCCAAAA CTCGACACTT
  1021  TCTACTACGT CGGGCTTCTG GGAATTAGCG TCGGAGGGAC ACGTGTCCCC GGCGTAACGG
  1081  CTTCTCTTTT TAAACTTGAC CAGATCGGTA ACGGTGGAGT TATTATCGAT TCGGGTACGT
  1141  CTGTGACCCG GTTGATCCGA CCAGCTTATA TTGCTATGAG AGACGCGTTC CGGGTCGGAG
  1201  CTAAGACATT GAAAAGAGCT CCGAATTTCT CACTCTTCGA CACGTGTTTC GATCTCTCCA
  1261  ATATGAACGA GGTTAAAGTA CCGACGGTGG TTTTACATTT CCGTAGAGCT GACGTATCAC
  1321  TTCCGGCGAC GAATTACCTG ATCCCTGTGG ATACCAACGG CAAGTTCTGT TTTGCGTTTG
  1381  CCGGTACGAT GGGCGGACTA TCCATAATTG GAAATATCCA GCAACAGGGT TTCCGGGTTG
  1441  TATACGACTT AGCGAGTTCC CGGGTCGGGT TTGCTCCAGG AGGATGCGCT TAATAATTAG
  1501  ATCTGACCGG AGCCGGTACG GATAATGTAC TTTTGTTTTC TCAATTTAAT GCTTAGACTT
  1561  GTTTTTTTTT CTTTTATAAA TCGGACAAGT GAATCTTT

Genomic Template: file=NC_003070.fna.gz, strand=+, from=116730, to=118927, description=gi|42592260|ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence

Predicted gene structure:

 Exon  1   117030   118627 (1598 n);  cDNA      1   1598 (1598 n); score: 0.992

MATCH	42592260+	7567+	0.992	1598	1.000	C
PGS_42592260+_7567+	(117030  118627)

Alignment (genomic DNA sequence = upper lines):

ACTCGCCACT TTCCTCGAGA AAACGAAAAA AAAAGATGGT AGGAAGAAGA AAAGCTTTAC      117089
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ACTCGCCACT TTCCTCGAGA AAACGAAAAA AAAAGATGGT AGGAAGAAGA AAAGCTTTAC          60


TCTTTTCTCT CTGTTTCTTC TTCCTCTCTC TTCCTTCCTT CTCTTCCCTT CCATCCTTCC      117149
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TCTTTTCTCT CTGTTTCTTC TTCCTCTCTC TTCCTTCCTT CTCTTCCCTT CCATCCTTCC         120


AAACCCTATT CCCCAATTCT CATTCCCTTC CTTGTGCTTC TCCCGTCTCA TTCCAACCCG      117209
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||  ||||||||||
AAACCCTATT CCCCAATTCT CATTCCCTTC CTTGTGCTTC TCCCGTCTCC TTCCAACCCG         180


ACTCCGACTC CGAGTCACTG CTAGAATCCG AATTTGAATC CGGATCCGAC TCCGAGTCTT      117269
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ACTCCGACTC CGAGTCACTG CTAGAATCCG AATTTGAATC CGGATCCGAC TCCGAGTCTT         240


CTTCTTCCAT TACTCTAAAC CTCGACCACA TCGATGCTCT CTCCTCCAAC AAAACACCCG      117329
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||  
CTTCTTCCAT TACTCTAAAC CTCGACCACA TCGATGCTCT CTCCTCCAAC AAAACACCTC         300


ACGAGCTATT CAGCTCCCGT CTCCAACGTG ACTCCCGGCG CGTGAAATCT ATCGCCACAC      117389
| |||||||| |||||||||| |||||||||| |||||||||| ||||| |||  ||||||||||
AAGAGCTATT CAGCTCCCGT CTCCAACGTG ACTCCCGGCG CGTGAGATCA ATCGCCACAC         360


TCGCCGCTCA AATCCCCGGA AGAAACGTGA CTCACGCGCC ACGACCCGGT GGATTCAGCA      117449
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TCGCCGCTCA AATCCCCGGA AGAAACGTGA CTCACGCGCC ACGACCCGGT GGATTCAGCA         420


GCTCAGTCGT CTCTGGTCTC TCTCAAGGAA GCGGTGAATA CTTCACGCGC CTCGGTGTCG      117509
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GCTCAGTCGT CTCTGGTCTC TCTCAAGGAA GCGGTGAATA CTTCACGCGC CTCGGTGTCG         480


GCACTCCGGC GAGATATGTT TACATGGTGC TCGACACCGG CAGCGACATC GTCTGGCTAC      117569
| |||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GTACTCCGGC GAGATATGTT TACATGGTGC TCGACACCGG CAGCGACATC GTCTGGCTAC         540


AATGCGCTCC TTGTCGGAGA TGCTACTCTC AATCCGACCC GATATTCGAC CCGAGAAAAT      117629
|||||||||| |||||||||| || ||||||| |||||||||| |||||||||| ||||||||||
AATGCGCTCC TTGTCGGAGA TGTTACTCTC AATCCGACCC GATATTCGAC CCGAGAAAAT         600


CCAAGACCTA TGCCACAATC CCCTGTTCTT CACCTCACTG CCGCCGATTA GACTCCGCCG      117689
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CCAAGACCTA TGCCACAATC CCCTGTTCTT CACCTCACTG CCGCCGATTA GACTCCGCCG         660


GATGCAACAC CCGTCGTAAG ACTTGTCTCT ACCAAGTCTC TTACGGAGAT GGTTCTTTCA      117749
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GATGCAACAC CCGTCGTAAG ACTTGTCTCT ACCAAGTCTC TTACGGAGAT GGTTCTTTCA         720


CCGTCGGCGA TTTCTCCACC GAAACGCTAA CTTTCCGGCG AAATCGCGTT AAAGGCGTTG      117809
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CCGTCGGCGA TTTCTCCACC GAAACGCTAA CTTTCCGGCG AAATCGCGTT AAAGGCGTTG         780


CTCTCGGATG TGGCCACGAC AACGAAGGTC TCTTCGTCGG AGCCGCCGGT TTATTAGGAC      117869
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTCTCGGATG TGGCCACGAC AACGAAGGTC TCTTCGTCGG AGCCGCCGGT TTATTAGGAC         840


TCGGTAAAGG TAAATTATCG TTCCCCGGTC AAACCGGTCA CCGGTTTAAT CAGAAATTCT      117929
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TCGGTAAAGG TAAATTATCG TTCCCCGGTC AAACCGGTCA CCGGTTTAAT CAGAAATTCT         900


CTTACTGTTT AGTCGACAGA TCCGCTTCTT CGAAACCTTC CTCGGTCGTC TTCGGAAACG      117989
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTTACTGTTT AGTCGACAGA TCCGCTTCTT CGAAACCTTC CTCGGTCGTC TTCGGAAACG         960


CCGCCGTATC ACGAATCGCG AGATTCACGC CACTTTTGTC AAACCCAAAA CTCGACACTT      118049
||||||| || |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CCGCCGTTTC ACGAATCGCG AGATTCACGC CACTTTTGTC AAACCCAAAA CTCGACACTT        1020


TCTACTACGT CGGGCTTCTG GGAATTAGCG TCGGAGGGAC ACGTGTCCCC GGCGTAACGG      118109
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TCTACTACGT CGGGCTTCTG GGAATTAGCG TCGGAGGGAC ACGTGTCCCC GGCGTAACGG        1080


CTTCTCTTTT TAAACTTGAC CAGATCGGTA ACGGTGGAGT TATTATCGAT TCGGGTACGT      118169
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTTCTCTTTT TAAACTTGAC CAGATCGGTA ACGGTGGAGT TATTATCGAT TCGGGTACGT        1140


CTGTGACCCG GTTGATCCGA CCAGCTTATA TTGCTATGAG AGACGCGTTC CGGGTCGGAG      118229
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTGTGACCCG GTTGATCCGA CCAGCTTATA TTGCTATGAG AGACGCGTTC CGGGTCGGAG        1200


CTAAGACATT GAAAAGAGCT CCGGATTTCT CACTCTTCGA CACGTGTTTC GATCTCTCCA      118289
|||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| ||||||||||
CTAAGACATT GAAAAGAGCT CCGAATTTCT CACTCTTCGA CACGTGTTTC GATCTCTCCA        1260


ATATGAACGA GGTTAAAGTA CCGACGGTGG TTTTACATTT CCGTGGAGCT GACGTATCAC      118349
|||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| ||||||||||
ATATGAACGA GGTTAAAGTA CCGACGGTGG TTTTACATTT CCGTAGAGCT GACGTATCAC        1320


TTCCGGCGAC GAATTACCTG ATCCCTGTGG ATACCAACGG CAAGTTCTGT TTTGCGTTTG      118409
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TTCCGGCGAC GAATTACCTG ATCCCTGTGG ATACCAACGG CAAGTTCTGT TTTGCGTTTG        1380


CCGGTACGAT GGGCGGACTA TCCATAATTG GGAATATCCA GCAACAGGGT TTCCGGGTTG      118469
|||||||||| |||||||||| |||||||||| | |||||||| |||||||||| ||||||||||
CCGGTACGAT GGGCGGACTA TCCATAATTG GAAATATCCA GCAACAGGGT TTCCGGGTTG        1440


TATACGACTT AGCGAGTTCC CGGGTCGGGT TTGCTCCAGG AGGATGCGCT TAATAATTAG      118529
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TATACGACTT AGCGAGTTCC CGGGTCGGGT TTGCTCCAGG AGGATGCGCT TAATAATTAG        1500


ATCTGACCGG AGCCGGTACG GATAATGTAC TTTTGTTTTC TCAATTTAAT GCTTAGACTT      118589
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ATCTGACCGG AGCCGGTACG GATAATGTAC TTTTGTTTTC TCAATTTAAT GCTTAGACTT        1560


GTTTTTTTTT TTTTTATAAA TCGGACAAGT GAATCTTT                              118627
||||||||||  ||||||||| |||||||||| ||||||||
GTTTTTTTTT CTTTTATAAA TCGGACAAGT GAATCTTT                                1598


********************************************************************************
EST Sequence: file=CeresTigr.gz, strand=+, description=3542

     1  ATCGATTAGG GTTTAGGAAC CTTGTCATCG GAAATCATTT CTTGTCTTTG TTTGTTATTC
    61  GAAGCTTCTC CTGCTTATTT GATACATATT CTCTCTTCCA GTTACTCTAC ATGGAACCAT
   121  TCGTTGTTAA GGAGAACATC GTCGCATCCG CTTCTTCGCC GATGAAGAAG CGACGGATCG
   181  ATCACACTGA GTCAGCTGAT GGTTCTGCGA TTAACGCTTC TAACTCTAGT AGCATCGGTG
   241  GTAACGATAC GGTGATGAAC ATGGCGGAGT TTGGTAACGA CAACTCCAAC AATCAGGAGT
   301  CTCAACAAGT TTGCACTTTC TTCAAGAAGC CAACGAAAAG TAAAAACATA AGGAAAAGAA
   361  CCATTGACGC TGATGAAGAA GACGGAGATT CGAAAAGCGA AAGCTCTATT TTACAAAATC
   421  TAAAGAAAGT TGCAAAACCC GATAGCAACT TGTACTTTTC TTCTGGACCA TCTACTAGAA
   481  CGAGTGGAGC TCCTGAGAGA CCCGTTTTTC ACTACGATTC ATCCAAGGAA ATCCAGGTTC
   541  AGAACGACAG TGGAGCAACA GCGACCCTTG AAACTGAAAC CGACTTCAAT CAAGACGCTC
   601  GAGCTATCCG TGAAAGAGTT CTTAAAAAAG CAGACCATGC ATTGAAGGGG AATAAGAAAA
   661  AGGCTTCAGA TGAGAAGCTG TACAAAGGAA TTCATGGATA TACAGATCAC AAAGCTGGGT
   721  TTAGAAGAGA ACAAACAATC TCGAGCGAGA AAGCTGGAGG CTCACACGGG CCTTTAAGAG
   781  CTTCTGCTCA CATCAGAGTA TCGGCTAGAT TCGATTACCA GCCAGACATT TGCAAGGATT
   841  ACAAGGAAAC CGGATACTGT GGATATGGAG ATTCGTGTAA GTTCTTGCAT GACCGTGGGG
   901  ATTACAAGCC GGGATGGCAG ATAGAGAAAG AGTGGGAAGA GGCAGAGAAA GTTAGGAAGA
   961  GAAATAAAGC TATGGGAGTT GAGGATGACG ATGATGAGGC TGACAAGGAT AGCGACGAAG
  1021  ACGAAAATGC ATTGCCCTTT GCTTGCTTCA TTTGCAGGGA GCCTTTTCTT GATCCAGTTG
  1081  TCACCAAATG CAAGCATTAC TTCTGTGAGC ATTGTGCTTT AAAGCATCAC ACGAAGAACA
  1141  AGAAATGCTT TGTGTGTAAC CAACCAACAA TGGGGATTTT CAATGCAGCA CATGAGATCA
  1201  AGAAGAGGAT GGCTGAAGAA CGGAGTAAAG CTGAACAAGG ATTGTGAAGT CCTTCTTTCA
  1261  CAGGACAAAA AGGCAAAAAC TATACATTTG ATTATTTGCT TGAGGAAAGC TTTTTGTTTT
  1321  GTTGTACTCA CTGGCCTATA TACTGTATAT TCGGATGACG ATGGTTGTTT CAAACTGATT
  1381  AACTTTTAAA TTT

Genomic Template: file=NC_003070.fna.gz, strand=+, from=136633, to=138416, description=gi|42592260|ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence

Predicted gene structure:

 Exon  1   136805   136816 (  12 n);  cDNA    298    309 (  12 n); score: 1.000
  Intron  1   136817   136934 ( 118 n); Pd: 0.999 (s:    0), Pa: 0.979 (s: 0.98)
 Exon  2   136935   137758 ( 824 n);  cDNA    310   1124 ( 815 n); score: 0.959
  Intron  2   137759   137847 (  89 n); Pd: 0.991 (s: 1.00), Pa: 0.925 (s: 0.98)
 Exon  3   137848   138116 ( 269 n);  cDNA   1125   1393 ( 269 n); score: 0.924

MATCH	42592260+	3542+	0.950	1105	0.793	C
PGS_42592260+_3542+	(136805  136816,136935  137758,137848  138116)

Alignment (genomic DNA sequence = upper lines):

AGTCTCAACA AGGTTACATA TACTTCCTTC TATCTCAATT CTAGTTGTCG TCTCATTGAG      136864
|||||||||| ||                                                    
AGTCTCAACA AG........ .......... .......... .......... ..........         309


ATTTTTTCTT GTTCTTCGTT GTTAGCTAGA AATTTTCATT TACACTAATC AAATCATTCT      136924
                                                                 
.......... .......... .......... .......... .......... ..........         309


TCTGTTTCAG TTTGCACTTT CTTCAAGAAG CCAACGAAAA GTAAAAACAT AAGAAAAAGA      136984
           |||||||||| |||||||||| |||||||||| |||||||||| ||| ||||||
.......... TTTGCACTTT CTTCAAGAAG CCAACGAAAA GTAAAAACAT AAGGAAAAGA         359


ACCATTGACG CTGATGAAGA AGACGGAGAT TCGAAAAGCG AAAGCTCTAT TCTACAAAAT      137044
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | ||||||||
ACCATTGACG CTGATGAAGA AGACGGAGAT TCGAAAAGCG AAAGCTCTAT TTTACAAAAT         419


CTAAAGAAAG TTGCAAAACC CGATAGCAAG TTATACTTTT CTTCTGGACC ATCTAAGAGT      137104
|||||||||| |||||||||| |||||||||  || ||||||| |||||||| |   |    |  
CTAAAGAAAG TTGCAAAACC CGATAGCAAC TTGTACTTTT CTTCTGGA-C --C----A--         470


TCTACTACAA CGAGTGGAGC TCCTGAGAGG TCCGTCTTTC ACTACGATTC ATCCAAGGAA      137164
||||||| || |||||||||| |||||||||   |||| |||| |||||||||| ||||||||||
TCTACTAGAA CGAGTGGAGC TCCTGAGAGA CCCGTTTTTC ACTACGATTC ATCCAAGGAA         530


ATCCAGGTTC AGAACGACAG TGGAGCAACA GCAACCCTTG AAACTGAGAC CGACTTCAAT      137224
|||||||||| |||||||||| |||||||||| || ||||||| ||||||| || ||||||||||
ATCCAGGTTC AGAACGACAG TGGAGCAACA GCGACCCTTG AAACTGAAAC CGACTTCAAT         590


CAAGACGCAC GAGCTATCCG TGAGAGAGTT CTTAAAAAAG CAGACGAAGC ATTGAAAGGG      137284
|||||||| | |||||||||| ||| |||||| |||||||||| ||||| | || |||||| |||
CAAGACGCTC GAGCTATCCG TGAAAGAGTT CTTAAAAAAG CAGACCATGC ATTGAAGGGG         650


AATAAGAAAA AGGCTTCTGA TGAGAAGCTG TACAAAGGAA TTCATGGATA TACAGATCAC      137344
|||||||||| ||||||| || |||||||||| |||||||||| |||||||||| ||||||||||
AATAAGAAAA AGGCTTCAGA TGAGAAGCTG TACAAAGGAA TTCATGGATA TACAGATCAC         710


AAAGCTGGGT TTAGAAGAGA ACAAACAATC TCGAGCGAGA AAGCTGGAGG CTCACACGGG      137404
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AAAGCTGGGT TTAGAAGAGA ACAAACAATC TCGAGCGAGA AAGCTGGAGG CTCACACGGG         770


CCATTAAGAG CTTCTGCTCA CATAAGAGTG TCGGCTAGAT TCGATTACCA GCCAGACATT      137464
|| ||||||| |||||||||| ||| |||||  |||||||||| |||||||||| ||||||||||
CCTTTAAGAG CTTCTGCTCA CATCAGAGTA TCGGCTAGAT TCGATTACCA GCCAGACATT         830


TGCAAGGATT ACAAAGAAAC CGGATACTGT GGATATGGAG ATTCGTGTAA GTTCTTGCAT      137524
|||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| ||||||||||
TGCAAGGATT ACAAGGAAAC CGGATACTGT GGATATGGAG ATTCGTGTAA GTTCTTGCAT         890


GACCGTGGGG ATTACAAACC AGGATGGCAG ATAGAGAAAG AGTGGGAAGA AGCAGAGAAA      137584
|||||||||| ||||||| ||  ||||||||| |||||||||| ||||||||||  |||||||||
GACCGTGGGG ATTACAAGCC GGGATGGCAG ATAGAGAAAG AGTGGGAAGA GGCAGAGAAA         950


GTTAGGAAGA GAAATAAAGC TATGGGAGTT GAGGATGAAG ATGATGAGGC TGACAAGGAT      137644
|||||||||| |||||||||| |||||||||| |||||||| | |||||||||| ||||||||||
GTTAGGAAGA GAAATAAAGC TATGGGAGTT GAGGATGACG ATGATGAGGC TGACAAGGAT        1010


AGCGACGAAG ACGAAAATGC ATTGCCCTTT GCTTGCTTCA TTTGCAGGGA GCCTTTTGTT      137704
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| ||
AGCGACGAAG ACGAAAATGC ATTGCCCTTT GCTTGCTTCA TTTGCAGGGA GCCTTTTCTT        1070


GATCCAGTTG TCACCAAATG CAAGCATTAC TTCTGTGAGC ATTGTGCTTT AAAGGTATGA      137764
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||      
GATCCAGTTG TCACCAAATG CAAGCATTAC TTCTGTGAGC ATTGTGCTTT AAAG......        1124


TCATCACAAT TACGAGTCTG TTTTTTTTTT AGTTGTGAAG AAATGTGTGA AACTAGCGAG      137824
                                                                 
.......... .......... .......... .......... .......... ..........        1124


TTTTGTTTAA TGTAATGATG CAGCATCACA CGAAGAACAA GAAGTGCTTT GTGTGTAACC      137884
                         ||||||| |||||||||| ||| |||||| ||||||||||
.......... .......... ...CATCACA CGAAGAACAA GAAATGCTTT GTGTGTAACC        1161


AACCAACAAT GGGGATTTTC AATGCAGCAC ATGAGATCAA GAAGAGAATG GCTGAAGAAC      137944
|||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| ||||||||||
AACCAACAAT GGGGATTTTC AATGCAGCAC ATGAGATCAA GAAGAGGATG GCTGAAGAAC        1221


GGAGTAAAGC TGAACAAGGA TTGTGAAGTC CTTGTTTCAC TGGACAAAAA GGCAAAAACT      138004
|||||||||| |||||||||| |||||||||| ||| ||||||  ||||||||| ||||||||||
GGAGTAAAGC TGAACAAGGA TTGTGAAGTC CTTCTTTCAC AGGACAAAAA GGCAAAAACT        1281


AT--ATTTGG TTATTTACTT GAGGAAAGCT TTTTGTTTTG TTGTACTCAC TGGCCTATAT      138062
||  |||||  |||||| ||| |||||||||| |||||||||| |||||||||| ||||||||||
ATACATTTGA TTATTTGCTT GAGGAAAGCT TTTTGTTTTG TTGTACTCAC TGGCCTATAT        1341


A-TATTCATT CGGATGACGA CGATAGTTGT TTCAAACTGA TTAACTTTTA AATTT           138116
| | |  ||| |||||   || |||| ||||| |||||||||| |||||||||| |||||
ACTGTATATT CGGAT---GA CGATGGTTGT TTCAAACTGA TTAACTTTTA AATTT             1393


********************************************************************************
EST Sequence: file=CeresTigr.gz, strand=+, description=3998

    1  GTTTTGGCAT AACGAAGCAT CTTCTTCTTC TTCCTTGTAT TTATTATCCA TTTCCAGAGA
   61  TTCTCCCTTG TGAGATAACA ACGAAGAACG AAAGAGAGAG AGAGAGAGAG AGATATGATG
  121  GACGGCGTTG AAGACGGCAC GGCGATGTAC GGTGGTCTCG AGACGGTGCA ATACGTACGG
  181  ACGCATCATC AACATCTGTG CAGAGAAAAC CAGTGTACCT CTGCTCTTGT CAAACACATC
  241  AAAGCTCCTC TTCATCTCGT TTGGTCACTT GTACGGAGAT TTGATCAACC GCAGAAATAC
  301  AAACCGTTTG TGAGCAGATG TACAGTAATC GGTGATCCTG AAATCGGCAG TCTTAGAGAA
  361  GTCAATGTTA AATCTGGTCT TCCTGCAACA ACATCTACTG AGAGATTAGA ACTTCTTGAT
  421  GATGAAGAAC ACATCCTCGG TATCAAAATC ATCGGTGGTG ATCACAGACT TAAGAATTAC
  481  TCGTCGATTT TGACGGTTCA TCCGGAGATA ATCGAGGGAA GAGCAGGAAC GATGGTGATT
  541  GAATCGTTTG TAGTTGATGT TCCTCAAGGT AACACAAAGG ATGAGACTTG CTACTTTGTT
  601  GAAGCACTTA TCAGATGTAA TCTCAAGTCA CTAGCAGATG TTTCTGAAAG ATTGGCTTCT
  661  CAGGACATTA CTCAGTGAAC TACATAATCA ATGAACAAGG GCATTGAAGT GAAGTATCAA
  721  TTCCAGTTTG TGATATAATC AATATTCTTC AGGATTTTTT TGGTTTGGCC TAGATATATA
  781  TATAGATATC TATCCTCGGT AATGACCAGT CTAAAAAGAT GTACATATTG TCCCAATGGT
  841  GAAGTTTTGA TGTAAGATAT CTCCTGGTGG TTTGTTATTT GTAGATATTT TTGTAAACAA
  901  TGTAAATGTG AATGGTTTAT GATGTATAAT ATATAGTTC

Genomic Template: file=NC_003070.fna.gz, strand=+, from=141724, to=143475, description=gi|42592260|ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence

Predicted gene structure:

 Exon  1   142024   142281 ( 258 n);  cDNA      1    258 ( 258 n); score: 0.996
  Intron  1   142282   142423 ( 142 n); Pd: 0.998 (s: 1.00), Pa: 0.998 (s: 0.98)
 Exon  2   142424   142639 ( 216 n);  cDNA    259    474 ( 216 n); score: 0.995
  Intron  2   142640   142710 (  71 n); Pd: 0.938 (s: 1.00), Pa: 0.998 (s: 1.00)
 Exon  3   142711   143175 ( 465 n);  cDNA    475    939 ( 465 n); score: 1.000

MATCH	42592260+	3998+	0.998	939	1.000	C
PGS_42592260+_3998+	(142024  142281,142424  142639,142711  143175)

Alignment (genomic DNA sequence = upper lines):

GTTTTGGCAT AACGAAGCAT CTTCTTCTTC TTCCTTGTAT TTATTATCCA TTTCCAGAGA      142083
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GTTTTGGCAT AACGAAGCAT CTTCTTCTTC TTCCTTGTAT TTATTATCCA TTTCCAGAGA          60


TTCTCCCTTG TGAGATAACA ACGAAGAACG AAAGAGAGAG AGAGAGAGAG AGATATGATG      142143
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TTCTCCCTTG TGAGATAACA ACGAAGAACG AAAGAGAGAG AGAGAGAGAG AGATATGATG         120


GACGGCGTTG AAGGCGGCAC GGCGATGTAC GGTGGTCTCG AGACGGTGCA ATACGTACGG      142203
|||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| ||||||||||
GACGGCGTTG AAGACGGCAC GGCGATGTAC GGTGGTCTCG AGACGGTGCA ATACGTACGG         180


ACGCATCATC AACATCTGTG CAGAGAAAAC CAGTGTACCT CTGCTCTTGT CAAACACATC      142263
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ACGCATCATC AACATCTGTG CAGAGAAAAC CAGTGTACCT CTGCTCTTGT CAAACACATC         240


AAAGCTCCTC TTCATCTCGT AAGCTTCTCC AATCTACCAC TAATTTCACC CTTTTCGTAC      142323
|||||||||| ||||||||                                              
AAAGCTCCTC TTCATCTC.. .......... .......... .......... ..........         258


CATTTTCTCC ATGATCCGTC AATTTTGATC CCAACCATCG ATTTAGGGTT TTTTCCCCCA      142383
                                                                 
.......... .......... .......... .......... .......... ..........         258


AATCTCTGTT TAACGATTGA TTATAATTGA TTTTTTTTAG GTTTGGTCAC TTGTACGGAG      142443
                                            |||||||||| ||||||||||
.......... .......... .......... .......... GTTTGGTCAC TTGTACGGAG         278


ATTTGATCAG CCGCAGAAAT ACAAACCGTT TGTGAGCAGA TGTACAGTAA TCGGTGATCC      142503
|||||||||  |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ATTTGATCAA CCGCAGAAAT ACAAACCGTT TGTGAGCAGA TGTACAGTAA TCGGTGATCC         338


TGAAATCGGC AGTCTTAGAG AAGTCAATGT TAAATCTGGT CTTCCTGCAA CAACATCTAC      142563
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TGAAATCGGC AGTCTTAGAG AAGTCAATGT TAAATCTGGT CTTCCTGCAA CAACATCTAC         398


TGAGAGATTA GAACTTCTTG ATGATGAAGA ACACATCCTC GGTATCAAAA TCATCGGTGG      142623
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TGAGAGATTA GAACTTCTTG ATGATGAAGA ACACATCCTC GGTATCAAAA TCATCGGTGG         458


TGATCACAGA CTTAAGGTAC AGCGAGAGAA ATCAAATCTC ATTGATGTTT GTTTATATGC      142683
|||||||||| ||||||                                                
TGATCACAGA CTTAAG.... .......... .......... .......... ..........         474


AGATTCTCAT TGATTGTTTG TTTGCAGAAT TACTCGTCGA TTTTGACGGT TCATCCGGAG      142743
                             ||| |||||||||| |||||||||| ||||||||||
.......... .......... .......AAT TACTCGTCGA TTTTGACGGT TCATCCGGAG         507


ATAATCGAGG GAAGAGCAGG AACGATGGTG ATTGAATCGT TTGTAGTTGA TGTTCCTCAA      142803
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ATAATCGAGG GAAGAGCAGG AACGATGGTG ATTGAATCGT TTGTAGTTGA TGTTCCTCAA         567


GGTAACACAA AGGATGAGAC TTGCTACTTT GTTGAAGCAC TTATCAGATG TAATCTCAAG      142863
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GGTAACACAA AGGATGAGAC TTGCTACTTT GTTGAAGCAC TTATCAGATG TAATCTCAAG         627


TCACTAGCAG ATGTTTCTGA AAGATTGGCT TCTCAGGACA TTACTCAGTG AACTACATAA      142923
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TCACTAGCAG ATGTTTCTGA AAGATTGGCT TCTCAGGACA TTACTCAGTG AACTACATAA         687


TCAATGAACA AGGGCATTGA AGTGAAGTAT CAATTCCAGT TTGTGATATA ATCAATATTC      142983
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TCAATGAACA AGGGCATTGA AGTGAAGTAT CAATTCCAGT TTGTGATATA ATCAATATTC         747


TTCAGGATTT TTTTGGTTTG GCCTAGATAT ATATATAGAT ATCTATCCTC GGTAATGACC      143043
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TTCAGGATTT TTTTGGTTTG GCCTAGATAT ATATATAGAT ATCTATCCTC GGTAATGACC         807


AGTCTAAAAA GATGTACATA TTGTCCCAAT GGTGAAGTTT TGATGTAAGA TATCTCCTGG      143103
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AGTCTAAAAA GATGTACATA TTGTCCCAAT GGTGAAGTTT TGATGTAAGA TATCTCCTGG         867


TGGTTTGTTA TTTGTAGATA TTTTTGTAAA CAATGTAAAT GTGAATGGTT TATGATGTAT      143163
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TGGTTTGTTA TTTGTAGATA TTTTTGTAAA CAATGTAAAT GTGAATGGTT TATGATGTAT         927


AATATATAGT TC                                                          143175
|||||||||| ||
AATATATAGT TC                                                             939


********************************************************************************
EST Sequence: file=CeresTigr.gz, strand=+, description=24379

    1  AAAATTGTGA AGCAGATTCG ATTTTAAAAT CAAAATTTGA GGGTCGAGCG GGAAAGTAAA
   61  AGTTCCCCTT CAATCTTCTA ATCTTTTCGT ATCTAGCGGG AAATTTCTCA GCAGTAAAAA
  121  TCAATGGCGA GAACCAAGCA TCGCGTTACC AGGTCACAAC CTCGGAATCA AACTGATGCC
  181  GCTGCTGCTT CATCTTCTCA GGCGGCAGGT CCAACTACGA CCCCGACAAG GAGAGGCGGT
  241  GAAGGTGGAG ATAATACTCA ACAAACAAAT CCTACAACTT CACCAGCTAC TGGTACAAGG
  301  AGAGGGGCTA AGAGATCCAG ACAGGCTATG CCACGAGGCT CACAGAAGAA GTCTTATCGA
  361  TACAGGCCAG GAACCGTTGC TCTAAAAGAG ATTCGCCATT TCCAGAAGCA GACAAACCTT
  421  CTTATTCCGG CTGCCAGTTT CATAAGAGAA GTGAGAAGTA TAACCCATAT GTTGGCCCCT
  481  CCCCAAATCA ATCGTTGGAC AGCTGAAGCT CTTGTTTCTC TTCAAGAGGC GGCAGAAGAT
  541  TACTTGGTTG GTTTGTTCTC AGATTCAATG CTCTGTGCTA TCCATGCAAG ACGTGTTACT
  601  CTAATGAGAA AAGACTTTGA ACTTGCACGC CGGCTTGGAG GAAAAGGCAG ACCATGGTGA
  661  TAGAAAACTC ACTCACTATT CACATCTCTT ACATTGTAAG TGAGGATCGA ATAGTTCACA
  721  ACAAGTGTGT CGTAGGTTGT ATAAGGTTAT TCTCTCCTTG TCTCTTGGTG ATGCATGTCC
  781  TTTTATTTTA CTAAATGATC TGACCAAAAC CTTCTTTTGA AACATACCTG GAAACCCGAA
  841  TTTGGTTTGA TTCCAATATC TAGGCTGTAA AACTTCTTTC TCTATGTGTG TTTCTATCTG
  901  CTTTTCGTTG

Genomic Template: file=NC_003070.fna.gz, strand=+, from=143264, to=145950, description=gi|42592260|ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence

Predicted gene structure:

 Exon  1   143563   143676 ( 114 n);  cDNA      1    114 ( 114 n); score: 0.965
  Intron  1   143677   143763 (  87 n); Pd: 0.923 (s: 0.96), Pa: 0.000 (s: 1.00)
 Exon  2   143764   143824 (  61 n);  cDNA    115    175 (  61 n); score: 1.000
  Intron  2   143825   143933 ( 109 n); Pd: 0.998 (s: 1.00), Pa: 0.939 (s: 0.95)
 Exon  3   143934   143977 (  44 n);  cDNA    176    219 (  44 n); score: 0.955
  Intron  3   143978   144063 (  86 n); Pd: 0.976 (s: 0.95), Pa: 0.817 (s: 1.00)
 Exon  4   144064   144109 (  46 n);  cDNA    220    265 (  46 n); score: 1.000
  Intron  4   144110   144192 (  83 n); Pd: 0.995 (s: 1.00), Pa: 0.978 (s:    0)
 Exon  5   144193   144227 (  35 n);  cDNA    266    300 (  35 n); score: 1.000
  Intron  5   144228   144314 (  87 n); Pd: 0.999 (s:    0), Pa: 0.775 (s:    0)
 Exon  6   144315   144351 (  37 n);  cDNA    301    337 (  37 n); score: 1.000
  Intron  6   144352   144446 (  95 n); Pd: 0.936 (s:    0), Pa: 0.997 (s: 1.00)
 Exon  7   144447   144559 ( 113 n);  cDNA    338    450 ( 113 n); score: 1.000
  Intron  7   144560   144926 ( 367 n); Pd: 0.991 (s: 1.00), Pa: 0.997 (s: 1.00)
 Exon  8   144927   145004 (  78 n);  cDNA    451    528 (  78 n); score: 0.987
  Intron  8   145005   145131 ( 127 n); Pd: 1.000 (s: 0.98), Pa: 0.969 (s: 1.00)
 Exon  9   145132   145207 (  76 n);  cDNA    529    604 (  76 n); score: 1.000
  Intron  9   145208   145344 ( 137 n); Pd: 0.797 (s: 1.00), Pa: 1.000 (s: 1.00)
 Exon 10   145345   145650 ( 306 n);  cDNA    605    910 ( 306 n); score: 0.993

MATCH	42592260+	24379+	0.991	910	1.000	C
PGS_42592260+_24379+	(143563  143676,143764  143824,143934  143977,144064  144109,144193  144227,144315  144351,144447  144559,144927  145004,145132  145207,145345  145650)

Alignment (genomic DNA sequence = upper lines):

CAAATTGTGA AGCAGATTCG ATTTTAAAAT CAAAATTTGA GTGTCGAGCG GGAAAGTAAA      143622
 ||||||||| |||||||||| |||||||||| |||||||||| | |||||||| ||||||||||
AAAATTGTGA AGCAGATTCG ATTTTAAAAT CAAAATTTGA GGGTCGAGCG GGAAAGTAAA          60


AGTTCCGCTC CAATCTTCTA ATCTTTTCGT ATCTAGCGGG AAATTTCTCA GCAGGTGACT      143682
|||||| ||  |||||||||| |||||||||| |||||||||| |||||||||| ||||      
AGTTCCCCTT CAATCTTCTA ATCTTTTCGT ATCTAGCGGG AAATTTCTCA GCAG......         114


TTCATAATCG CAGTTTTCGT CGATTCTCTT TTCCGATTTT ACGATTCCTC TCTCTCTCTC      143742
                                                                 
.......... .......... .......... .......... .......... ..........         114


ATGGTGCGAT TTCTCCAGCA GTAAAAATCA ATGGCGAGAA CCAAGCATCG CGTTACCAGG      143802
                       ||||||||| |||||||||| |||||||||| ||||||||||
.......... .......... .TAAAAATCA ATGGCGAGAA CCAAGCATCG CGTTACCAGG         153


TCACAACCTC GGAATCAAAC TGGTATCTTA AATCTGCTTT CTCTTTCAAT TTTTACTTCT      143862
|||||||||| |||||||||| ||                                         
TCACAACCTC GGAATCAAAC TG........ .......... .......... ..........         175


GATTTTACCC AGAATTTTAG GTTTTTTATT TCGATTTTGT TAACCCTAGA TTTCGAATCT      143922
                                                                 
.......... .......... .......... .......... .......... ..........         175


GAAATTTGTA GATGCCGCCG GTGCTTCATC TTCTCAGGCG GCAGGTCCAA CTACGGTACG      143982
            ||||||| |  ||||||||| |||||||||| |||||||||| |||||     
.......... .ATGCCGCTG CTGCTTCATC TTCTCAGGCG GCAGGTCCAA CTACG.....         219


GCATCTTTTT CCGTCTTAGG GTTTCCAATG TTTCTTCCTT TTATCGTTAT GATCAAATTT      144042
                                                                 
.......... .......... .......... .......... .......... ..........         219


GTTTATCTAT CGAAATTGAA GACCCCGACA AGGAGAGGCG GTGAAGGTGG AGATAATACT      144102
                       ||||||||| |||||||||| |||||||||| ||||||||||
.......... .......... .ACCCCGACA AGGAGAGGCG GTGAAGGTGG AGATAATACT         258


CAACAAAGTG AGTTTTTTAT ATTTGAAGTC TTTTTTTTCC CTCTTTTCAT CTCTTTTGTT      144162
|||||||                                                          
CAACAAA... .......... .......... .......... .......... ..........         265


TGTGAAGTTA TTCTTTTGTA ACATCTGCAG CAAATCCTAC AACTTCACCA GCTACTGGTA      144222
                                 |||||||||| |||||||||| ||||||||||
.......... .......... .......... CAAATCCTAC AACTTCACCA GCTACTGGTA         295


CAAGGGTAAG ATTTTTGTGA CCATTGCTTA TGAACTGCTT CAACTTTGAT TTCGTTATTA      144282
|||||                                                            
CAAGG..... .......... .......... .......... .......... ..........         300


AGCTGACAAA ATTCTCGTTT TGGTTTGTCA AGAGAGGGGC TAAGAGATCC AGACAGGCTA      144342
                                   |||||||| |||||||||| ||||||||||
.......... .......... .......... ..AGAGGGGC TAAGAGATCC AGACAGGCTA         328


TGCCACGAGG TTTGTTTTAA AAAAAAAACC AATCTCTTGT GATATCCCTG AGAATACAGG      144402
|||||||||                                                        
TGCCACGAG. .......... .......... .......... .......... ..........         337


ACACTTAGTG TGTTTAAAAC TAATCTTCGG TGTTGTCCTT GTAGGCTCAC AGAAGAAGTC      144462
                                                |||||| ||||||||||
.......... .......... .......... .......... ....GCTCAC AGAAGAAGTC         353


TTATCGATAC AGGCCAGGAA CCGTTGCTCT AAAAGAGATT CGCCATTTCC AGAAGCAGAC      144522
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TTATCGATAC AGGCCAGGAA CCGTTGCTCT AAAAGAGATT CGCCATTTCC AGAAGCAGAC         413


AAACCTTCTT ATTCCGGCTG CCAGTTTCAT AAGAGAAGTT AGTTACTCTT TTTCTTACCA      144582
|||||||||| |||||||||| |||||||||| |||||||                         
AAACCTTCTT ATTCCGGCTG CCAGTTTCAT AAGAGAA... .......... ..........         450


GCCATAATAA GTTTCACAGC TTAACAATAT TCATATATAC TAACAGAGGC ACAAGCCTTT      144642
                                                                 
.......... .......... .......... .......... .......... ..........         450


// intron part 144643 144822 (180 n) not shown                 //

//........ .......... .......... .......... .......... ........//


CAGAACCATA TGATTCCTGT AGCTACAAAA CTCAACATGA ATCGTCAGTG ATGTGGAAAT      144882
                                                                 
.......... .......... .......... .......... .......... ..........         450


GCTGATTTGT GTTACAAACA AACTATTTTA CATTGTTTTT CCAGGTGAGA AGTATAACCC      144942
                                                |||||| ||||||||||
.......... .......... .......... .......... ....GTGAGA AGTATAACCC         466


ATATGTTGGC CCCTCCCCAA ATCAATCGTT GGACAGCTGA AGCTCTTGTT GCTCTTCAAG      145002
|||||||||| |||||||||| |||||||||| |||||||||| ||||||||||  |||||||||
ATATGTTGGC CCCTCCCCAA ATCAATCGTT GGACAGCTGA AGCTCTTGTT TCTCTTCAAG         526


AGGTACCAAT CCTTCAACTT TTTCTTTATA CGAATGTATG AATATAGATA TAGAGATAGT      145062
||                                                               
AG........ .......... .......... .......... .......... ..........         528


CACACATTTC AACTAATGTC ATTCCCCTTG ATGACCAATC AACCTAATCA CACAAATTCT      145122
                                                                 
.......... .......... .......... .......... .......... ..........         528


TTGTGGTAGG CGGCAGAAGA TTACTTGGTT GGTTTGTTCT CAGATTCAAT GCTCTGTGCT      145182
         | |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
.........G CGGCAGAAGA TTACTTGGTT GGTTTGTTCT CAGATTCAAT GCTCTGTGCT         579


ATCCATGCAA GACGTGTTAC TCTAAGTAAG TACTCTAAAA GAAGACATTT TTCAGTCTCA      145242
|||||||||| |||||||||| |||||                                      
ATCCATGCAA GACGTGTTAC TCTAA..... .......... .......... ..........         604


ACTTAGGAAT CACAAGCATA CATTTTATAT CCCTTTGAAT CATTAGTTAC TTGAATATCA      145302
                                                                 
.......... .......... .......... .......... .......... ..........         604


TATATAAAAT GCTTATCTAT ATCTGTTTTT TGTTCATATC AGTGAGAAAA GACTTTGAAC      145362
                                              |||||||| ||||||||||
.......... .......... .......... .......... ..TGAGAAAA GACTTTGAAC         622


TTGCACGCCG GCTTGGAGGA AAAGGCAGAC CATGGTGATA GAAAACTCAC TCACTATTCA      145422
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TTGCACGCCG GCTTGGAGGA AAAGGCAGAC CATGGTGATA GAAAACTCAC TCACTATTCA         682


CATCTCTTAC ATTGTAAGTG AGGATCGAAT AGTTAACAAC AAGTGTGTCG TAGGTTGTAT      145482
|||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| ||||||||||
CATCTCTTAC ATTGTAAGTG AGGATCGAAT AGTTCACAAC AAGTGTGTCG TAGGTTGTAT         742


AAGGTTATTC TCTCCTTGTC TCTTGGTGAT GCATGTCCTT TTATTTTACT AAATGATCTG      145542
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AAGGTTATTC TCTCCTTGTC TCTTGGTGAT GCATGTCCTT TTATTTTACT AAATGATCTG         802


ACCAAAACCT TCTTTTGAAA CATAACTGGA AACCCGAATT TGGTTTGATT CCAATATCTA      145602
|||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| ||||||||||
ACCAAAACCT TCTTTTGAAA CATACCTGGA AACCCGAATT TGGTTTGATT CCAATATCTA         862


GGCTGTAAAA CTTCTTTCTC TATGTGTGTT TCTATCTGCT TTTCGTTG                   145650
|||||||||| |||||||||| |||||||||| |||||||||| ||||||||
GGCTGTAAAA CTTCTTTCTC TATGTGTGTT TCTATCTGCT TTTCGTTG                      910


********************************************************************************
EST Sequence: file=CeresTigr.gz, strand=+, description=6115

     1  AAACAAACAA AAAAGTTCCT GTTCGATTCC TCCTCTCATT CATTCTCTGC TTGTTCCTCA
    61  AATCCTTCAA TTTTCTCATC AAATCCAGAT TTGCGAATTT GTGTTTTCTT GAATCTAATT
   121  ACTCTCGATG ATTTCGAAAG ATCACCTTCA TCATCTGGAT CCTCTGGGTA CAACCAAATC
   181  GTACCACATG AATACCTCCA CCGTATCGCC GCCGTCTCCG GCATCATCAA TTTCGTTGTC
   241  GCAATCGGCG TGGCTGGAGG TTCGTTTGTT CTACGTCCGT ATCGCTCCTT GCGTCGTTGA
   301  GAACGTCCCT GACTTCCTCA CCCTCCGTCA CCCTCGTCGC GAAACCGGTG CTTCTCTTGA
   361  GGTTAACGGC GTTCGCGTTC CTTCGTCGCA GACGGCGTCG CTTAAACTCC GCCGTGACAG
   421  AGTCGACCGG GAATCGTCGG AGGTGACTTA CGTGAGCACT GAGACCGTTC GCGTTACCGG
   481  ATGCGTTGAT TTCGAGGTTT ATGATAACGA GGATATGGTC TTGTGTGGGA ACCTAGATAG
   541  AATCGAAGGT GCTTGGAACA ATGGAACTGT GAGTGATCCC AAGACTGGAT GGGGCATGGA
   601  TTGTTACATT GCTATGGGAA ACGGACACGT GTCAGGTCCT TCTGCCTCTG CGTTTTTCCA
   661  GCCAAAGTTT GGAGTCTCGT CTCCGTCCGT CGAGGTTTAT ATAGCTGGTT GTTGTGGTGG
   721  TGTCCCGGTG ATATTGACCA AGACGATTCA GGCGAGTCCG AGGAGGAAGG TGGCTAGGCA
   781  CGTGACACTC GACGCTATCC CTGAGGATGA GGAAGTTGGC AAAGAGCAAG ACATTGGTAC
   841  CATTGGTGAT GAATTGGCCC GTCAAAGCAA AGTACAGATG ATGGAATCAG AAGTTGATGA
   901  ATACGATGAC TCAGATATGA AAATGGCACA GAGATATTAC CCTGAAGGAA TGTACGTTGA
   961  TGAGGATGGT CAGCTCTCAT GGTTCAATGC AGGAGTCAGA GTCGGAGTTG GGATAGGCCT
  1021  TGGGATGTGT CTTGGTGTAG GCATTGGAGT TGGATTACTC ATGCGTTCGT ATCAAGCAAC
  1081  AACTAGTAAC CTTCGTAGGA GGTTTCTCTG ATCATCACCT ACCATAAACT AAAAACCCAC
  1141  TTAGACATTT CGACATCTAC TAAGAATGTC GGTAACGTAG TGGGTTATAA AAGAGATAGA
  1201  ATTTTGGTAG ATAGATGTAT AGAGCTTTTG GTTTTCACCT GTTTGTGTCC TTTTGAATAT
  1261  ATATATATAT ATATATTCGG CTCTGTTC

Genomic Template: file=NC_003070.fna.gz, strand=+, from=184833, to=187032, description=gi|42592260|ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence

Predicted gene structure:

 Exon  1   185133   186009 ( 877 n);  cDNA      1    877 ( 877 n); score: 0.993
  Intron  1   186010   186339 ( 330 n); Pd: 0.998 (s: 1.00), Pa: 1.000 (s: 1.00)
 Exon  2   186340   186730 ( 391 n);  cDNA    878   1268 ( 391 n); score: 0.997

MATCH	42592260+	6115+	0.994	1268	0.984	C
PGS_42592260+_6115+	(185133  186009,186340  186730)

Alignment (genomic DNA sequence = upper lines):

AAACAAACAA AAAAGTTCCT GTTCGATTCC TCCTCTCATT CATTCTCTGC TTGTTCCTCA      185192
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AAACAAACAA AAAAGTTCCT GTTCGATTCC TCCTCTCATT CATTCTCTGC TTGTTCCTCA          60


AATCCTTCAA TTTTCTCATC AAATCCAGAT TTGCGAATTT AGGTTTTCTT GAATCTAATC      185252
|||||||||| |||||||||| |||||||||| ||||||||||   |||||||| ||||||||| 
AATCCTTCAA TTTTCTCATC AAATCCAGAT TTGCGAATTT GTGTTTTCTT GAATCTAATT         120


GTTCTCGATG ATTTCGAAAG ATCACCTTCA TCATCTGGAT CCTCTGGGTA CAACCAAATC      185312
  |||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ACTCTCGATG ATTTCGAAAG ATCACCTTCA TCATCTGGAT CCTCTGGGTA CAACCAAATC         180


GTACCACATG AATACCTCCA CCGTATCGCC GCCGTCTCCG GCATCATCAA TTTCGTTGTC      185372
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GTACCACATG AATACCTCCA CCGTATCGCC GCCGTCTCCG GCATCATCAA TTTCGTTGTC         240


GCAATCGGCG TGGCTGGAGG TTCGTTTGTT CTACGTCCGT ATCGCTCCTT GCGTCGTTGA      185432
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GCAATCGGCG TGGCTGGAGG TTCGTTTGTT CTACGTCCGT ATCGCTCCTT GCGTCGTTGA         300


GAACGTCCCT GACTTCCTCA CCCTCCGTCA CCCTCGTCGC GAAACCGGTG CTTCTCTTGA      185492
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GAACGTCCCT GACTTCCTCA CCCTCCGTCA CCCTCGTCGC GAAACCGGTG CTTCTCTTGA         360


GGTTAACGGC GTTCGCGTTC CTTCGTCGCA GACGGCGTCG CTTAAACTCC GCCGTGACAG      185552
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GGTTAACGGC GTTCGCGTTC CTTCGTCGCA GACGGCGTCG CTTAAACTCC GCCGTGACAG         420


AGTCGACCGG GAATCGTCGG AGGTGACTTA CGTGAGCACT GAGACCGTTC GCGTTACCGG      185612
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AGTCGACCGG GAATCGTCGG AGGTGACTTA CGTGAGCACT GAGACCGTTC GCGTTACCGG         480


ATGCGTTGAT TTCGAGGTTT ATGATAACGA GGATATGGTC TTGTGTGGGA ACCTAGATAG      185672
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ATGCGTTGAT TTCGAGGTTT ATGATAACGA GGATATGGTC TTGTGTGGGA ACCTAGATAG         540


AATCGAAGGT GCTTGGAACA ATGGAACTGT GAGTGATCCC AAGACTGGAT GGGGCATGGA      185732
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AATCGAAGGT GCTTGGAACA ATGGAACTGT GAGTGATCCC AAGACTGGAT GGGGCATGGA         600


TTGTTACATT GCTATGGGAA ACGGACACGT GTCAGGTCCT TCTGCCTCTG TGTTTTTCCA      185792
|||||||||| |||||||||| |||||||||| |||||||||| ||||||||||  |||||||||
TTGTTACATT GCTATGGGAA ACGGACACGT GTCAGGTCCT TCTGCCTCTG CGTTTTTCCA         660


GCCAAAGTTT GGAGTCTCGT CTCCGTCCGT CGAGGTTTAT ATAGCTGGTT GTTGTGGTGG      185852
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GCCAAAGTTT GGAGTCTCGT CTCCGTCCGT CGAGGTTTAT ATAGCTGGTT GTTGTGGTGG         720


TGTCCCGGTG ATATTGACCA AGACGATTCA GGCGAGTCCG AGGAGGAAGG TGGCTAGGCA      185912
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TGTCCCGGTG ATATTGACCA AGACGATTCA GGCGAGTCCG AGGAGGAAGG TGGCTAGGCA         780


CGTGACACTC GACGCTATCC CTGAGGATGA GGAAGTTGGC AAAGAGCAAG ACATTGGTAC      185972
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CGTGACACTC GACGCTATCC CTGAGGATGA GGAAGTTGGC AAAGAGCAAG ACATTGGTAC         840


CATTGGTGAT GAATTGGCCC GTCAAAGCAA AGTACAGGTA TGATTCTGAT TTCACAATTC      186032
|||||||||| |||||||||| |||||||||| |||||||                         
CATTGGTGAT GAATTGGCCC GTCAAAGCAA AGTACAG... .......... ..........         877


TCTGTTTGGT GATTGTCCAA GCCCTTAAGT TACGATTCTT AATAACTTGG GATTGAGATT      186092
                                                                 
.......... .......... .......... .......... .......... ..........         877


// intron part 186093 186272 (180 n) not shown                 //

//........ .......... .......... .......... .......... ........//


ATAGGTCAAT AGACTCTCTT TGCACTTTTT TTGGTGCTTT ATCTTGTTTG TCGTTTCGTT      186332
                                                                 
.......... .......... .......... .......... .......... ..........         877


TATGCAGATG ATGGAATCAG AAGTTGATGA ATACGATGAC TCAGATATGA AAATGGCACA      186392
       ||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
.......ATG ATGGAATCAG AAGTTGATGA ATACGATGAC TCAGATATGA AAATGGCACA         930


GAGATATTAC CCTGAAGGAA TGTACGTTGA TGAGGATGGT CAGCTCTCAT GGTTCAATGC      186452
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GAGATATTAC CCTGAAGGAA TGTACGTTGA TGAGGATGGT CAGCTCTCAT GGTTCAATGC         990


AGGAGTCAGA GTCGGAGTTG GGATAGGCCT TGGGATGTGT CTTGGTGTAG GCATTGGAGT      186512
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AGGAGTCAGA GTCGGAGTTG GGATAGGCCT TGGGATGTGT CTTGGTGTAG GCATTGGAGT        1050


TGGATTACTC ATGCGTTCGT ATCAAGCAAC AACTAGTAAC CTTCGTAGGA GGTTTCTCTG      186572
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TGGATTACTC ATGCGTTCGT ATCAAGCAAC AACTAGTAAC CTTCGTAGGA GGTTTCTCTG        1110


ATCATCACCT ACCATAAACT AAAAACCCAC TTAGACATTT CGAGATCTAC TAAGAATGTC      186632
|||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| ||||||||||
ATCATCACCT ACCATAAACT AAAAACCCAC TTAGACATTT CGACATCTAC TAAGAATGTC        1170


GGTAACGTAG TGGGTTATAA AAGAGATAGA ATTTTGGTAG ATAGATGTAT AGAGCTTTTG      186692
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GGTAACGTAG TGGGTTATAA AAGAGATAGA ATTTTGGTAG ATAGATGTAT AGAGCTTTTG        1230


GTTTTCACCT GTTTGTGTCC TTTTGAATAT ATATATAT                              186730
|||||||||| |||||||||| |||||||||| ||||||||
GTTTTCACCT GTTTGTGTCC TTTTGAATAT ATATATAT                                1268


--------------------------------------------------------------------------------

Predicted gene locations (15):


PGL   1 (- strand):      33148     31188
AGS-1 (33148  33029,32670  32547,32459  32431,32347  32282,32195  32088,31998  31933,31813  31693,31602  31521,31424  31188)
SCR   (e 1.000  d 1.000 a 0.994,e 1.000  d 0.997 a 0.672,e 1.000  d 0.999 a 1.000,e 1.000  d 0.997 a 0.781,e 1.000  d 1.000 a 0.997,e 1.000  d 0.999 a 0.998,e 1.000  d 0.990 a 0.985,e 1.000  d 0.999 a 0.931,e 0.996)

  Exon  1    33148    33029 ( 120 n); score: 1.000
    Intron  1    33028    32671 ( 358 n);           Pd: 1.000  Pa: 0.994
  Exon  2    32670    32547 ( 124 n); score: 1.000
    Intron  2    32546    32460 (  87 n);           Pd: 0.997  Pa: 0.672
  Exon  3    32459    32431 (  29 n); score: 1.000
    Intron  3    32430    32348 (  83 n);           Pd: 0.999  Pa: 1.000
  Exon  4    32347    32282 (  66 n); score: 1.000
    Intron  4    32281    32196 (  86 n);           Pd: 0.997  Pa: 0.781
  Exon  5    32195    32088 ( 108 n); score: 1.000
    Intron  5    32087    31999 (  89 n);           Pd: 1.000  Pa: 0.997
  Exon  6    31998    31933 (  66 n); score: 1.000
    Intron  6    31932    31814 ( 119 n);           Pd: 0.999  Pa: 0.998
  Exon  7    31813    31693 ( 121 n); score: 1.000
    Intron  7    31692    31603 (  90 n);           Pd: 0.990  Pa: 0.985
  Exon  8    31602    31521 (  82 n); score: 1.000
    Intron  8    31520    31425 (  96 n);           Pd: 0.999  Pa: 0.931
  Exon  9    31424    31188 ( 237 n); score: 0.996

  PGS (33148  33029,32670  32547,32459  32431,32347  32282,32195  32088,31998  31933,31813  31693,31602  31521,31424  31188)	124537+

3-phase translation of AGS-1 (-strand):

          .         .         .         .         .         .         
   33148  ATATATACATTTTACAATCACTTGCTAGACCAACGGGCTTCACTTGTTTCTCTCCCAAAG
           I  Y  T  F  Y  N  H  L  L  D  Q  R  A  S  L  V  S  L  P  K 
            Y  I  H  F  T  I  T  C  *  T  N  G  L  H  L  F  L  S  Q  S
             I  Y  I  L  Q  S  L  A  R  P  T  G  F  T  C  F  S  P  K  


          .         .         .         .         .         .          : 
   33088  TTTCTTCATCATCCTTGCGATAAAGAAAACAACAATCGGCTGTTTCGTTTCGATCCAAAG : 
           F  L  H  H  P  C  D  K  E  N  N  N  R  L  F  R  F  D  P  K  : 
            F  F  I  I  L  A  I  K  K  T  T  I  G  C  F  V  S  I  Q  R : 
          V  S  S  S  S  L  R  *  R  K  Q  Q  S  A  V  S  F  R  S  K   : 


          .         .         .         .         .         .         
   32670  ATGAGTGAAGAAACTAAAGATAACCAGAGGCTGCAGCGACCAGCTCCTCGTCTTAACGAG
           M  S  E  E  T  K  D  N  Q  R  L  Q  R  P  A  P  R  L  N  E 
            *  V  K  K  L  K  I  T  R  G  C  S  D  Q  L  L  V  L  T  R
          D  E  *  R  N  *  R  *  P  E  A  A  A  T  S  S  S  S  *  R  


          .         .         .         .         .         .         
   32610  AGGATTCTCTCATCCTTGTCAAGAAGATCCGTAGCTGCTCATCCATGGCATGATCTTGAG
           R  I  L  S  S  L  S  R  R  S  V  A  A  H  P  W  H  D  L  E 
            G  F  S  H  P  C  Q  E  D  P  *  L  L  I  H  G  M  I  L  R
          E  D  S  L  I  L  V  K  K  I  R  S  C  S  S  M  A  *  S  *  


          .    :       .         .         .   :        .         .         
   32550  ATTG : GACCTGGAGCTCCACAGATTTTCAATGTG : GTTGTTGAGATCACTAAAGGAAGCAAG
           I   : G  P  G  A  P  Q  I  F  N  V  :  V  V  E  I  T  K  G  S  K 
            L  :  D  L  E  L  H  R  F  S  M  W :   L  L  R  S  L  K  E  A  R
          D  W :   T  W  S  S  T  D  F  Q  C   : G  C  *  D  H  *  R  K  Q  


          .         .         .         .         :  .         .         
   32320  GTCAAATACGAGCTTGACAAAAAGACAGGACTCATCAAG : GTTGATCGTATTCTCTACTCA
           V  K  Y  E  L  D  K  K  T  G  L  I  K  :  V  D  R  I  L  Y  S 
            S  N  T  S  L  T  K  R  Q  D  S  S  R :   L  I  V  F  S  T  H
          G  Q  I  R  A  *  Q  K  D  R  T  H  Q   : G  *  S  Y  S  L  L  


          .         .         .         .         .         .         
   32174  TCAGTTGTGTACCCTCACAACTATGGTTTTGTTCCTCGCACATTGTGTGAAGACAATGAC
           S  V  V  Y  P  H  N  Y  G  F  V  P  R  T  L  C  E  D  N  D 
            Q  L  C  T  L  T  T  M  V  L  F  L  A  H  C  V  K  T  M  T
          I  S  C  V  P  S  Q  L  W  F  C  S  S  H  I  V  *  R  Q  *  


          .         .         .       :    .         .         .         
   32114  CCCATTGATGTCTTAGTCATCATGCAG : GAACCTGTGCTTCCGGGTTGTTTTCTGCGTGCC
           P  I  D  V  L  V  I  M  Q  :  E  P  V  L  P  G  C  F  L  R  A 
            P  L  M  S  *  S  S  C  R :   N  L  C  F  R  V  V  F  C  V  P
          P  H  *  C  L  S  H  H  A   : G  T  C  A  S  G  L  F  S  A  C  


          .         .         .         .   :        .         .         
   31965  AGAGCCATTGGATTAATGCCTATGATTGACCAG : GGTGAAAAAGATGACAAGATCATTGCA
           R  A  I  G  L  M  P  M  I  D  Q  :  G  E  K  D  D  K  I  I  A 
            E  P  L  D  *  C  L  *  L  T  R :   V  K  K  M  T  R  S  L  Q
          Q  S  H  W  I  N  A  Y  D  *  P   : G  *  K  R  *  Q  D  H  C  


          .         .         .         .         .         .         
   31786  GTGTGTGTTGATGATCCTGAATATAAGCACTACACTGACATCAAAGAACTTCCTCCTCAC
           V  C  V  D  D  P  E  Y  K  H  Y  T  D  I  K  E  L  P  P  H 
            C  V  L  M  I  L  N  I  S  T  T  L  T  S  K  N  F  L  L  T
          S  V  C  *  *  S  *  I  *  A  L  H  *  H  Q  R  T  S  S  S  


          .         .         .         .    :       .         .         
   31726  CGTCTCTCTGAAATCCGTCGTTTCTTCGAAGACT : ACAAGAAAAACGAGAACAAGGAAGTT
           R  L  S  E  I  R  R  F  F  E  D   : Y  K  K  N  E  N  K  E  V 
            V  S  L  K  S  V  V  S  S  K  T  :  T  R  K  T  R  T  R  K  L
          P  S  L  *  N  P  S  F  L  R  R  L :   Q  E  K  R  E  Q  G  S  


          .         .         .         .         .         .      :     
   31576  GCAGTGAATGATTTTCTGCCATCTGAGTCTGCGGTTGAAGCTATCCAGTACTCAAT : GGAC
           A  V  N  D  F  L  P  S  E  S  A  V  E  A  I  Q  Y  S  M :   D 
            Q  *  M  I  F  C  H  L  S  L  R  L  K  L  S  S  T  Q   : W  T
          C  S  E  *  F  S  A  I  *  V  C  G  *  S  Y  P  V  L  N  :  G  


          .         .         .         .         .         .         
   31420  CTCTATGCTGAATACATTCTCCACACCCTGAGGCGTTGAAGCTTCTCCTCAGAAGATTTC
           L  Y  A  E  Y  I  L  H  T  L  R  R  *  S  F  S  S  E  D  F 
            S  M  L  N  T  F  S  T  P  *  G  V  E  A  S  P  Q  K  I  S
          P  L  C  *  I  H  S  P  H  P  E  A  L  K  L  L  L  R  R  F  


          .         .         .         .         .         .         
   31360  TGCAGCATCTATGTTTCTGTTACTTTTCATTGATAATAAGAAGCATATGATCCTAATTGA
           C  S  I  Y  V  S  V  T  F  H  *  *  *  E  A  Y  D  P  N  * 
            A  A  S  M  F  L  L  L  F  I  D  N  K  K  H  M  I  L  I  D
          L  Q  H  L  C  F  C  Y  F  S  L  I  I  R  S  I  *  S  *  L  


          .         .         .         .         .         .         
   31300  TATTACTTTTATCTCTGCATTTTTCTTCCTTATCATTTGGTCCTTCTGTAATTTCGTTTT
           Y  Y  F  Y  L  C  I  F  L  P  Y  H  L  V  L  L  *  F  R  F 
            I  T  F  I  S  A  F  F  F  L  I  I  W  S  F  C  N  F  V  L
          I  L  L  L  S  L  H  F  S  S  L  S  F  G  P  S  V  I  S  F  


          .         .         .         .         .         .  
   31240  AAAGACCCTTTCTTGGCATTGAAATTTTTGGTTTAATTTGTTTGAAGAGTTCT
           K  D  P  F  L  A  L  K  F  L  V  *  F  V  *  R  V   
            K  T  L  S  W  H  *  N  F  W  F  N  L  F  E  E  F  
          *  R  P  F  L  G  I  E  I  F  G  L  I  C  L  K  S  S 


Maximal non-overlapping open reading frames (>= 64 codons)

>42592260-_PGL-1_AGS-1_PPS_1 (33148  33029,32670  32547,32459  32431,32347  32282,32195  32088,31998  31933,31813  31693,31602  31521,31424  31382)	(frame '0';   756 bp,  252 residues) 
       1  IYTFYNHLLD QRASLVSLPK FLHHPCDKEN NNRLFRFDPK MSEETKDNQR LQRPAPRLNE 
      61  RILSSLSRRS VAAHPWHDLE IGPGAPQIFN VVVEITKGSK VKYELDKKTG LIKVDRILYS 
     121  SVVYPHNYGF VPRTLCEDND PIDVLVIMQE PVLPGCFLRA RAIGLMPMID QGEKDDKIIA 
     181  VCVDDPEYKH YTDIKELPPH RLSEIRRFFE DYKKNENKEV AVNDFLPSES AVEAIQYSMD 
     241  LYAEYILHTL RR*




PGL   2 (- strand):      40944     38753
AGS-1 (40944  40675,40535  40473,40329  40213,39814  39409,39287  39136,39054  38753)
SCR   (e 0.996  d 0.000 a 0.993,e 1.000  d 0.997 a 0.995,e 1.000  d 1.000 a 0.996,e 0.998  d 0.999 a 1.000,e 1.000  d 0.978 a 0.935,e 1.000)

  Exon  1    40944    40675 ( 270 n); score: 0.996
    Intron  1    40674    40536 ( 139 n);           Pd: 0.000  Pa: 0.993
  Exon  2    40535    40473 (  63 n); score: 1.000
    Intron  2    40472    40330 ( 143 n);           Pd: 0.997  Pa: 0.995
  Exon  3    40329    40213 ( 117 n); score: 1.000
    Intron  3    40212    39815 ( 398 n);           Pd: 1.000  Pa: 0.996
  Exon  4    39814    39409 ( 406 n); score: 0.998
    Intron  4    39408    39288 ( 121 n);           Pd: 0.999  Pa: 1.000
  Exon  5    39287    39136 ( 152 n); score: 1.000
    Intron  5    39135    39055 (  81 n);           Pd: 0.978  Pa: 0.935
  Exon  6    39054    38753 ( 302 n); score: 1.000

  PGS (40944  40675,40535  40473,40329  40213,39814  39409,39287  39136,39054  38753)	20749+

3-phase translation of AGS-1 (-strand):

          .         .         .         .         .         .         
   40944  AAAGCACATTGGGGCTTATCTCTCTCTAAGTAATACACACAAAAATAACTCACATATAGA
           K  A  H  W  G  L  S  L  S  K  *  Y  T  Q  K  *  L  T  Y  R 
            K  H  I  G  A  Y  L  S  L  S  N  T  H  K  N  N  S  H  I  E
             S  T  L  G  L  I  S  L  *  V  I  H  T  K  I  T  H  I  *  


          .         .         .         .         .         .         
   40884  GAGAGATATGGCTGGAGATATGCAAGGAGTGAGAGTAGTAGAAAAATATTCACCGGTCAT
           E  R  Y  G  W  R  Y  A  R  S  E  S  S  R  K  I  F  T  G  H 
            R  D  M  A  G  D  M  Q  G  V  R  V  V  E  K  Y  S  P  V  I
          R  E  I  W  L  E  I  C  K  E  *  E  *  *  K  N  I  H  R  S  


          .         .         .         .         .         .         
   40824  AGTGATGGTGATGTCAAATGTAGCGATGGGTTCGGTGAATGCACTTGTGAAGAAAGCTCT
           S  D  G  D  V  K  C  S  D  G  F  G  E  C  T  C  E  E  S  S 
            V  M  V  M  S  N  V  A  M  G  S  V  N  A  L  V  K  K  A  L
          *  *  W  *  C  Q  M  *  R  W  V  R  *  M  H  L  *  R  K  L  


          .         .         .         .         .         .         
   40764  TGATGTTGGTGTGAACCATATGGTCATTGGTGCTTATCGAATGGCTATTTCCGCTTTAAT
           *  C  W  C  E  P  Y  G  H  W  C  L  S  N  G  Y  F  R  F  N 
            D  V  G  V  N  H  M  V  I  G  A  Y  R  M  A  I  S  A  L  I
          L  M  L  V  *  T  I  W  S  L  V  L  I  E  W  L  F  P  L  *  


          .         .         .          : .         .         .         
   40704  TTTGGTTCCCTTTGCCTATGTCTTGGAAAG : GAAAACAAGACCACAAATAACGTTTAGGCT
           F  G  S  L  C  L  C  L  G  K  :  E  N  K  T  T  N  N  V  *  A 
            L  V  P  F  A  Y  V  L  E  R :   K  T  R  P  Q  I  T  F  R  L
          F  W  F  P  L  P  M  S  W  K   : G  K  Q  D  H  K  *  R  L  G  


          .         .         .         .   :        .         .         
   40505  AATGGTCGATCATTTCGTCAGTGGCCTTCTCGG : GGCGAGTTTGATGCAGTTTTTCTTTTT
           N  G  R  S  F  R  Q  W  P  S  R  :  G  E  F  D  A  V  F  L  F 
            M  V  D  H  F  V  S  G  L  L  G :   A  S  L  M  Q  F  F  F  L
          *  W  S  I  I  S  S  V  A  F  S   : G  R  V  *  C  S  F  S  F  


          .         .         .         .         .         .         
   40302  GCTTGGTCTGTCGTACACGTCAGCAACTGTTTCGTGTGCTTTGGTAAGCATGTTGCCTGC
           A  W  S  V  V  H  V  S  N  C  F  V  C  F  G  K  H  V  A  C 
            L  G  L  S  Y  T  S  A  T  V  S  C  A  L  V  S  M  L  P  A
          C  L  V  C  R  T  R  Q  Q  L  F  R  V  L  W  *  A  C  C  L  


          .         .         .          : .         .         .         
   40242  AATCACCTTCGCTTTGGCCCTTATTTTCAG : GACTGAAAATGTGAAGATTCTAAAGACCAA
           N  H  L  R  F  G  P  Y  F  Q  :  D  *  K  C  E  D  S  K  D  Q 
            I  T  F  A  L  A  L  I  F  R :   T  E  N  V  K  I  L  K  T  K
          Q  S  P  S  L  W  P  L  F  S   : G  L  K  M  *  R  F  *  R  P  


          .         .         .         .         .         .         
   39784  AGCAGGAATGTTGAAGGTGATTGGAACTTTGATCTGTATAAGTGGAGCTTTGTTCTTAAC
           S  R  N  V  E  G  D  W  N  F  D  L  Y  K  W  S  F  V  L  N 
            A  G  M  L  K  V  I  G  T  L  I  C  I  S  G  A  L  F  L  T
          K  Q  E  C  *  R  *  L  E  L  *  S  V  *  V  E  L  C  S  *  


          .         .         .         .         .         .         
   39724  ATTTTACAAAGGCCCACAAATATCAAACTCTCACTCTCACTCTCACGGTGGGGCTTCCCA
           I  L  Q  R  P  T  N  I  K  L  S  L  S  L  S  R  W  G  F  P 
            F  Y  K  G  P  Q  I  S  N  S  H  S  H  S  H  G  G  A  S  H
          H  F  T  K  A  H  K  Y  Q  T  L  T  L  T  L  T  V  G  L  P  


          .         .         .         .         .         .         
   39664  CAACAACAACGATCAAGACAAGGCCAATAATTGGCTTCTTGGATGTCTTTATTTAACCAT
           Q  Q  Q  R  S  R  Q  G  Q  *  L  A  S  W  M  S  L  F  N  H 
            N  N  N  D  Q  D  K  A  N  N  W  L  L  G  C  L  Y  L  T  I
          T  T  T  T  I  K  T  R  P  I  I  G  F  L  D  V  F  I  *  P  


          .         .         .         .         .         .         
   39604  AGGAACAGTGTTGCTATCTCTATGGATGTTGTTTCAAGGGACTTTAAGTATTAAGTACCC
           R  N  S  V  A  I  S  M  D  V  V  S  R  D  F  K  Y  *  V  P 
            G  T  V  L  L  S  L  W  M  L  F  Q  G  T  L  S  I  K  Y  P
          *  E  Q  C  C  Y  L  Y  G  C  C  F  K  G  L  *  V  L  S  T  


          .         .         .         .         .         .         
   39544  TTGCAAATACTCGAGCACTTGTCTTATGTCAATTTTCGCGGCATTTCAATGTGCTCTCTT
           L  Q  I  L  E  H  L  S  Y  V  N  F  R  G  I  S  M  C  S  L 
            C  K  Y  S  S  T  C  L  M  S  I  F  A  A  F  Q  C  A  L  L
          L  A  N  T  R  A  L  V  L  C  Q  F  S  R  H  F  N  V  L  S  


          .         .         .         .         .         .         
   39484  GAGCCTTTACAAGAGCAGAGACGTTAATGATTGGATCATAGATGATAGATTCGTTATCAC
           E  P  L  Q  E  Q  R  R  *  *  L  D  H  R  *  *  I  R  Y  H 
            S  L  Y  K  S  R  D  V  N  D  W  I  I  D  D  R  F  V  I  T
          *  A  F  T  R  A  E  T  L  M  I  G  S  *  M  I  D  S  L  S  


          .         .      :     .         .         .         .         
   39424  CGTCATCATATACGCT : GGAGTGGTAGGACAAGCAATGACGACGGTTGCAACAACATGGGG
           R  H  H  I  R   : W  S  G  R  T  S  N  D  D  G  C  N  N  M  G 
            V  I  I  Y  A  :  G  V  V  G  Q  A  M  T  T  V  A  T  T  W  G
          P  S  S  Y  T  L :   E  W  *  D  K  Q  *  R  R  L  Q  Q  H  G  


          .         .         .         .         .         .         
   39243  GATTAAAAAATTAGGAGCTGTGTTCGCATCGGCGTTTTTCCCACTTACTCTCATTTCGGC
           D  *  K  I  R  S  C  V  R  I  G  V  F  P  T  Y  S  H  F  G 
            I  K  K  L  G  A  V  F  A  S  A  F  F  P  L  T  L  I  S  A
          G  L  K  N  *  E  L  C  S  H  R  R  F  S  H  L  L  S  F  R  


          .         .         .         .         .        :   .         
   39183  TACTCTATTTGATTTCCTCATTTTACACACTCCTTTATACCTTGGAAG : TGTGATTGGATC
           Y  S  I  *  F  P  H  F  T  H  S  F  I  P  W  K  :  C  D  W  I 
            T  L  F  D  F  L  I  L  H  T  P  L  Y  L  G  S :   V  I  G  S
          L  L  Y  L  I  S  S  F  Y  T  L  L  Y  T  L  E   : V  *  L  D  


          .         .         .         .         .         .         
   39042  ACTAGTGACCATAACGGGTCTCTACATGTTCTTGTGGGGGAAGAACAAAGAAACGGAATC
           T  S  D  H  N  G  S  L  H  V  L  V  G  E  E  Q  R  N  G  I 
            L  V  T  I  T  G  L  Y  M  F  L  W  G  K  N  K  E  T  E  S
          H  *  *  P  *  R  V  S  T  C  S  C  G  G  R  T  K  K  R  N  


          .         .         .         .         .         .         
   38982  ATCAACTGCATTGTCTTCAGGAATGGATAACGAAGCTCAATATACTACTCCTAATAAGGA
           I  N  C  I  V  F  R  N  G  *  R  S  S  I  Y  Y  S  *  *  G 
            S  T  A  L  S  S  G  M  D  N  E  A  Q  Y  T  T  P  N  K  D
          H  Q  L  H  C  L  Q  E  W  I  T  K  L  N  I  L  L  L  I  R  


          .         .         .         .         .         .         
   38922  TAACGACTCTAAGTCGCCCGTTTAATTTAATTATATTGTTGTTAATGTATGTTTCAAATA
           *  R  L  *  V  A  R  L  I  *  L  Y  C  C  *  C  M  F  Q  I 
            N  D  S  K  S  P  V  *  F  N  Y  I  V  V  N  V  C  F  K  *
          I  T  T  L  S  R  P  F  N  L  I  I  L  L  L  M  Y  V  S  N  


          .         .         .         .         .         .         
   38862  ACTGTTATGTCCTAGTTAATGTTTAAGGAGAGGTAATGAGAGATAAAATTTTATAATTCC
           T  V  M  S  *  L  M  F  K  E  R  *  *  E  I  K  F  Y  N  S 
            L  L  C  P  S  *  C  L  R  R  G  N  E  R  *  N  F  I  I  P
          N  C  Y  V  L  V  N  V  *  G  E  V  M  R  D  K  I  L  *  F  


          .         .         .         .         .         
   38802  AAACATCAACGTAGAGATTTGTGAAATATTTAAATCCGGTTTGTTTGGTT
           K  H  Q  R  R  D  L  *  N  I  *  I  R  F  V  W   
            N  I  N  V  E  I  C  E  I  F  K  S  G  L  F  G  
          Q  T  S  T  *  R  F  V  K  Y  L  N  P  V  C  L  V 


Maximal non-overlapping open reading frames (>= 64 codons)

>42592260-_PGL-2_AGS-1_PPS_1 (40943  40675,40535  40473,40329  40213,39814  39409,39287  39136,39054  38898)	(frame '1';  1161 bp,  387 residues) 
       1  KHIGAYLSLS NTHKNNSHIE RDMAGDMQGV RVVEKYSPVI VMVMSNVAMG SVNALVKKAL 
      61  DVGVNHMVIG AYRMAISALI LVPFAYVLER KTRPQITFRL MVDHFVSGLL GASLMQFFFL 
     121  LGLSYTSATV SCALVSMLPA ITFALALIFR TENVKILKTK AGMLKVIGTL ICISGALFLT 
     181  FYKGPQISNS HSHSHGGASH NNNDQDKANN WLLGCLYLTI GTVLLSLWML FQGTLSIKYP 
     241  CKYSSTCLMS IFAAFQCALL SLYKSRDVND WIIDDRFVIT VIIYAGVVGQ AMTTVATTWG 
     301  IKKLGAVFAS AFFPLTLISA TLFDFLILHT PLYLGSVIGS LVTITGLYMF LWGKNKETES 
     361  STALSSGMDN EAQYTTPNKD NDSKSPV*




PGL   3 (- strand):      46818     45349
AGS-1 (46818  46376,46145  46044,45954  45646,45559  45349)
SCR   (e 0.995  d 0.963 a 0.925,e 1.000  d 0.581 a 0.967,e 1.000  d 0.000 a 0.947,e 1.000)

  Exon  1    46818    46376 ( 443 n); score: 0.995
    Intron  1    46375    46146 ( 230 n);           Pd: 0.963  Pa: 0.925
  Exon  2    46145    46044 ( 102 n); score: 1.000
    Intron  2    46043    45955 (  89 n);           Pd: 0.581  Pa: 0.967
  Exon  3    45954    45646 ( 309 n); score: 1.000
    Intron  3    45645    45560 (  86 n);           Pd: 0.000  Pa: 0.947
  Exon  4    45559    45349 ( 211 n); score: 1.000

  PGS (46818  46376,46145  46044,45954  45646,45559  45349)	21739+

3-phase translation of AGS-1 (-strand):

          .         .         .         .         .         .         
   46818  CAAATAATTTACTTTCTGGTCCTTCGATAATGGCGGCCTCCTGCTTCGCAATTCCCTTAT
           Q  I  I  Y  F  L  V  L  R  *  W  R  P  P  A  S  Q  F  P  Y 
            K  *  F  T  F  W  S  F  D  N  G  G  L  L  L  R  N  S  L  I
             N  N  L  L  S  G  P  S  I  M  A  A  S  C  F  A  I  P  L  


          .         .         .         .         .         .         
   46758  CTTCTTCTTCTCGATCGTCTCACAATGCAATTCCCAAATACAAAACCCTAATCTCTTCTT
           L  L  L  L  D  R  L  T  M  Q  F  P  N  T  K  P  *  S  L  L 
            F  F  F  S  I  V  S  Q  C  N  S  Q  I  Q  N  P  N  L  F  F
          S  S  S  S  R  S  S  H  N  A  I  P  K  Y  K  T  L  I  S  S  


          .         .         .         .         .         .         
   46698  CTTCTTACTCTTACTTAGAATCTCTGAAACTTCAATTCTCTTCTTCCAATTCTTTTCATC
           L  L  T  L  T  *  N  L  *  N  F  N  S  L  L  P  I  L  F  I 
            F  L  L  L  L  R  I  S  E  T  S  I  L  F  F  Q  F  F  S  S
          S  S  Y  S  Y  L  E  S  L  K  L  Q  F  S  S  S  N  S  F  H  


          .         .         .         .         .         .         
   46638  ACTCTTCTCTTTCTCGTCCCTTTGTAGCTCAACCACTTCAAATCAAGGTCTCTTCTTCAG
           T  L  L  F  L  V  P  L  *  L  N  H  F  K  S  R  S  L  L  Q 
            L  F  S  F  S  S  L  C  S  S  T  T  S  N  Q  G  L  F  F  R
          H  S  S  L  S  R  P  F  V  A  Q  P  L  Q  I  K  V  S  S  S  


          .         .         .         .         .         .         
   46578  AATTATCAGTTCTCGATGAAGAAAAAGAAGAAGAAGTAGTTAAAGGAGAAGCAGAACCCA
           N  Y  Q  F  S  M  K  K  K  K  K  K  *  L  K  E  K  Q  N  P 
            I  I  S  S  R  *  R  K  R  R  R  S  S  *  R  R  S  R  T  Q
          E  L  S  V  L  D  E  E  K  E  E  E  V  V  K  G  E  A  E  P  


          .         .         .         .         .         .         
   46518  ATAAAGATAGTGTCGTCTCCAAAGCAGAACCAGTAAAGAAACCGAGACCTTGCGAGCTCT
           I  K  I  V  S  S  P  K  Q  N  Q  *  R  N  R  D  L  A  S  S 
            *  R  *  C  R  L  Q  S  R  T  S  K  E  T  E  T  L  R  A  L
          N  K  D  S  V  V  S  K  A  E  P  V  K  K  P  R  P  C  E  L  


          .         .         .         .         .         .         
   46458  ACGTGTGTAATATCCCTAGAAGCTACGACATTGCTCAGCTTCTTGACATGTTTCAGCCTT
           T  C  V  I  S  L  E  A  T  T  L  L  S  F  L  T  C  F  S  L 
            R  V  *  Y  P  *  K  L  R  H  C  S  A  S  *  H  V  S  A  F
          Y  V  C  N  I  P  R  S  Y  D  I  A  Q  L  L  D  M  F  Q  P  


          .         .         .   :        .         .         .         
   46398  TTGGAACTGTAATCTCTGTAGAG : GTATCGCGAAATCCTCAGACGGGAGAGAGCCGTGGAA
           L  E  L  *  S  L  *  R :   Y  R  E  I  L  R  R  E  R  A  V  E 
            W  N  C  N  L  C  R   : G  I  A  K  S  S  D  G  R  E  P  W  K
          F  G  T  V  I  S  V  E  :  V  S  R  N  P  Q  T  G  E  S  R  G  


          .         .         .         .         .         .         
   46108  GCGGGTACGTGACAATGGGTTCTATAAACTCTGCCAAAATCGCCATTGCTTCTCTTGATG
           A  G  T  *  Q  W  V  L  *  T  L  P  K  S  P  L  L  L  L  M 
            R  V  R  D  N  G  F  Y  K  L  C  Q  N  R  H  C  F  S  *  W
          S  G  Y  V  T  M  G  S  I  N  S  A  K  I  A  I  A  S  L  D  


          .     :      .         .         .         .         .         
   46048  GAACA : GAAGTAGGTGGTCGGGAAATGCGGGTTAGGTACTCTGTTGACATGAATCCAGGAA
           E  Q :   K  *  V  V  G  K  C  G  L  G  T  L  L  T  *  I  Q  E 
            N   : R  S  R  W  S  G  N  A  G  *  V  L  C  *  H  E  S  R  N
          G  T  :  E  V  G  G  R  E  M  R  V  R  Y  S  V  D  M  N  P  G  


          .         .         .         .         .         .         
   45899  CAAGAAGAAACCCTGAAGTCTTGAACTCAACTCCAAAGAAGATTCTGATGTACGAAAGCC
           Q  E  E  T  L  K  S  *  T  Q  L  Q  R  R  F  *  C  T  K  A 
            K  K  K  P  *  S  L  E  L  N  S  K  E  D  S  D  V  R  K  P
          T  R  R  N  P  E  V  L  N  S  T  P  K  K  I  L  M  Y  E  S  


          .         .         .         .         .         .         
   45839  AACACAAGGTCTATGTCGGAAATCTCCCTTGGTTCACACAGCCTGATGGTTTGAGAAACC
           N  T  R  S  M  S  E  I  S  L  G  S  H  S  L  M  V  *  E  T 
            T  Q  G  L  C  R  K  S  P  L  V  H  T  A  *  W  F  E  K  P
          Q  H  K  V  Y  V  G  N  L  P  W  F  T  Q  P  D  G  L  R  N  


          .         .         .         .         .         .         
   45779  ACTTTAGCAAGTTTGGCACAATCGTAAGCACGAGAGTGTTACATGATCGTAAGACCGGGA
           T  L  A  S  L  A  Q  S  *  A  R  E  C  Y  M  I  V  R  P  G 
            L  *  Q  V  W  H  N  R  K  H  E  S  V  T  *  S  *  D  R  E
          H  F  S  K  F  G  T  I  V  S  T  R  V  L  H  D  R  K  T  G  


          .         .         .         .         .         .         
   45719  GAAACAGAGTCTTTGCCTTTCTTTCTTTTACAAGCGGTGAAGAACGTGATGCGGCTTTAT
           E  T  E  S  L  P  F  F  L  L  Q  A  V  K  N  V  M  R  L  Y 
            K  Q  S  L  C  L  S  F  F  Y  K  R  *  R  T  *  C  G  F  I
          R  N  R  V  F  A  F  L  S  F  T  S  G  E  E  R  D  A  A  L  


          .         .    :       .         .         .         .         
   45659  CATTCAATGGAACA : CAATATGAAGGTCGCAGAATCATCGTCAGAGAAGGTATCGAGAAGA
           H  S  M  E  H :   N  M  K  V  A  E  S  S  S  E  K  V  S  R  R 
            I  Q  W  N   : T  I  *  R  S  Q  N  H  R  Q  R  R  Y  R  E  E
          S  F  N  G  T  :  Q  Y  E  G  R  R  I  I  V  R  E  G  I  E  K  


          .         .         .         .         .         .         
   45513  GTGAGTCGTAAACCAACTGTTCTGCTTTTGCTGCAAAGACATCTCTTGGACACAAACAAT
           V  S  R  K  P  T  V  L  L  L  L  Q  R  H  L  L  D  T  N  N 
            *  V  V  N  Q  L  F  C  F  C  C  K  D  I  S  W  T  Q  T  M
          S  E  S  *  T  N  C  S  A  F  A  A  K  T  S  L  G  H  K  Q  


          .         .         .         .         .         .         
   45453  GTGTAATGAATGTCTTCTGATTTCTTCGACAAGTAACCTTTACATATTATATCCTTCTCG
           V  *  *  M  S  S  D  F  F  D  K  *  P  L  H  I  I  S  F  S 
            C  N  E  C  L  L  I  S  S  T  S  N  L  Y  I  L  Y  P  S  R
          C  V  M  N  V  F  *  F  L  R  Q  V  T  F  T  Y  Y  I  L  L  


          .         .         .         .         .    
   45393  ATTTTGTTTATCACCCATTATATCTACCTGTATAATTCTCTTTTC
           I  L  F  I  T  H  Y  I  Y  L  Y  N  S  L  F 
            F  C  L  S  P  I  I  S  T  C  I  I  L  F   
          D  F  V  Y  H  P  L  Y  L  P  V  *  F  S  F  


Maximal non-overlapping open reading frames (>= 64 codons)

>42592260-_PGL-3_AGS-1_PPS_1 (46816  46376,46145  46044,45954  45646,45559  45503)	(frame '2';   906 bp,  302 residues) 
       1  NNLLSGPSIM AASCFAIPLS SSSRSSHNAI PKYKTLISSS SYSYLESLKL QFSSSNSFHH 
      61  SSLSRPFVAQ PLQIKVSSSE LSVLDEEKEE EVVKGEAEPN KDSVVSKAEP VKKPRPCELY 
     121  VCNIPRSYDI AQLLDMFQPF GTVISVEVSR NPQTGESRGS GYVTMGSINS AKIAIASLDG 
     181  TEVGGREMRV RYSVDMNPGT RRNPEVLNST PKKILMYESQ HKVYVGNLPW FTQPDGLRNH 
     241  FSKFGTIVST RVLHDRKTGR NRVFAFLSFT SGEERDAALS FNGTQYEGRR IIVREGIEKS 
     301  ES*




PGL   4 (- strand):      51108     50117
AGS-1 (51108  51064,50963  50883,50631  50419,50337  50117)
SCR   (e 1.000  d 0.171 a 0.999,e 1.000  d 0.998 a 1.000,e 0.995  d 0.937 a 1.000,e 1.000)

  Exon  1    51108    51064 (  45 n); score: 1.000
    Intron  1    51063    50964 ( 100 n);           Pd: 0.171  Pa: 0.999
  Exon  2    50963    50883 (  81 n); score: 1.000
    Intron  2    50882    50632 ( 251 n);           Pd: 0.998  Pa: 1.000
  Exon  3    50631    50419 ( 213 n); score: 0.995
    Intron  3    50418    50338 (  81 n);           Pd: 0.937  Pa: 1.000
  Exon  4    50337    50117 ( 221 n); score: 1.000

  PGS (51108  51064,50963  50883,50631  50419,50337  50117)	24367+

3-phase translation of AGS-1 (-strand):

          .         .         .         .         .     :      .         
   51108  ATTTGATCCGTTTATACTTGTTATTGGCATTTCATCATCGTCTGG : GATAAAAAAATGTCG
           I  *  S  V  Y  T  C  Y  W  H  F  I  I  V  W  :  D  K  K  M  S 
            F  D  P  F  I  L  V  I  G  I  S  S  S  S  G :   I  K  K  C  R
             L  I  R  L  Y  L  L  L  A  F  H  H  R  L   : G  *  K  N  V  


          .         .         .         .         .         .         
   50948  ACAGTTGGAGAGCTTGCTTGCAGCTACGCTGTTATGATCCTCGAGGACGAGGGTATCGCT
           T  V  G  E  L  A  C  S  Y  A  V  M  I  L  E  D  E  G  I  A 
            Q  L  E  S  L  L  A  A  T  L  L  *  S  S  R  T  R  V  S  L
          D  S  W  R  A  C  L  Q  L  R  C  Y  D  P  R  G  R  G  Y  R  


          .      :     .         .         .         .         .         
   50888  ATCACG : GCTGACAAAATCGCGACCTTGGTGAAAGCTGCTGGTGTTAGTATTGAGTCATAC
           I  T  :  A  D  K  I  A  T  L  V  K  A  A  G  V  S  I  E  S  Y 
            S  R :   L  T  K  S  R  P  W  *  K  L  L  V  L  V  L  S  H  T
          Y  H   : G  *  Q  N  R  D  L  G  E  S  C  W  C  *  Y  *  V  I  


          .         .         .         .         .         .         
   50577  TGGCCAATGCTATTCGCCAAGATGGCTGAGAAACGTAACGTGACTGATCTCATCATGAAC
           W  P  M  L  F  A  K  M  A  E  K  R  N  V  T  D  L  I  M  N 
            G  Q  C  Y  S  P  R  W  L  R  N  V  T  *  L  I  S  S  *  T
          L  A  N  A  I  R  Q  D  G  *  E  T  *  R  D  *  S  H  H  E  


          .         .         .         .         .         .         
   50517  GTTGGTGCTGGTGGTGGAGGTGGTGCTCCGGTTGCAGCTGCTGCTCCAGCTGCTGGCGGT
           V  G  A  G  G  G  G  G  A  P  V  A  A  A  A  P  A  A  G  G 
            L  V  L  V  V  E  V  V  L  R  L  Q  L  L  L  Q  L  L  A  V
          R  W  C  W  W  W  R  W  C  S  G  C  S  C  C  S  S  C  W  R  


          .         .         .         .         :  .         .         
   50457  GGTGCGGCAGCTGCTCCTGCTGCTGAGGAGAAGAAGAAG : GATGAGCCAGCAGAAGAGAGT
           G  A  A  A  A  P  A  A  E  E  K  K  K  :  D  E  P  A  E  E  S 
            V  R  Q  L  L  L  L  L  R  R  R  R  R :   M  S  Q  Q  K  R  V
          W  C  G  S  C  S  C  C  *  G  E  E  E   : G  *  A  S  R  R  E  


          .         .         .         .         .         .         
   50316  GACGGAGATTTGGGTTTCGGTTTGTTTGACTAAACGCAGTCACTTGTCTTTCTTCTTTGT
           D  G  D  L  G  F  G  L  F  D  *  T  Q  S  L  V  F  L  L  C 
            T  E  I  W  V  S  V  C  L  T  K  R  S  H  L  S  F  F  F  V
          *  R  R  F  G  F  R  F  V  *  L  N  A  V  T  C  L  S  S  L  


          .         .         .         .         .         .         
   50256  AGTTGGATATTGGAGACTATATTTTGTCGTATGAGTTATTATTACTTGTTTGATCTGGCT
           S  W  I  L  E  T  I  F  C  R  M  S  Y  Y  Y  L  F  D  L  A 
            V  G  Y  W  R  L  Y  F  V  V  *  V  I  I  T  C  L  I  W  L
          *  L  D  I  G  D  Y  I  L  S  Y  E  L  L  L  L  V  *  S  G  


          .         .         .         .         .         .         
   50196  AAAGGACTATTAGTTGGTTTATGATGCGTATGTTGTATAACTCAAGTTTCCTAGCAAACC
           K  G  L  L  V  G  L  *  C  V  C  C  I  T  Q  V  S  *  Q  T 
            K  D  Y  *  L  V  Y  D  A  Y  V  V  *  L  K  F  P  S  K  P
          *  R  T  I  S  W  F  M  M  R  M  L  Y  N  S  S  F  L  A  N  


          .         .         
   50136  AATCGGCTCGGGCTTTTGTT
           N  R  L  G  L  L   
            I  G  S  G  F  C  
          Q  S  A  R  A  F  V 


Maximal non-overlapping open reading frames (>= 64 codons)

>42592260-_PGL-4_AGS-1_PPS_1 (51102  51064,50963  50883,50631  50419,50337  50284)	(frame '0';   384 bp,  128 residues) 
       1  SVYTCYWHFI IVWDKKMSTV GELACSYAVM ILEDEGIAIT ADKIATLVKA AGVSIESYWP 
      61  MLFAKMAEKR NVTDLIMNVG AGGGGGAPVA AAAPAAGGGA AAAPAAEEKK KDEPAEESDG 
     121  DLGFGLFD*




PGL   5 (+ strand):      52869     54685
AGS-1 (52869  53183,53484  53624,53703  54685)
SCR   (e 0.997  d 0.985 a 1.000,e 1.000  d 0.998 a 0.947,e 0.992)

  Exon  1    52869    53183 ( 315 n); score: 0.997
    Intron  1    53184    53483 ( 300 n);           Pd: 0.985  Pa: 1.000
  Exon  2    53484    53624 ( 141 n); score: 1.000
    Intron  2    53625    53702 (  78 n);           Pd: 0.998  Pa: 0.947
  Exon  3    53703    54685 ( 983 n); score: 0.992

  PGS (52869  53183,53484  53624,53703  54685)	148018+

3-phase translation of AGS-1 (+strand):

          .         .         .         .         .         .         
   52869  ATTGGGATTTCATTTAGATAATTTTTTTTTGGGTCTTGATATAAGTTTTGTTCTTTCTAA
           I  G  I  S  F  R  *  F  F  F  G  S  *  Y  K  F  C  S  F  * 
            L  G  F  H  L  D  N  F  F  L  G  L  D  I  S  F  V  L  S  N
             W  D  F  I  *  I  I  F  F  W  V  L  I  *  V  L  F  F  L  


          .         .         .         .         .         .         
   52929  TTTGGTAAGGCAAGAAGAGCATTAAGAGCATTAAAAGGGTTAGTGAAGCTACAAGCATTG
           F  G  K  A  R  R  A  L  R  A  L  K  G  L  V  K  L  Q  A  L 
            L  V  R  Q  E  E  H  *  E  H  *  K  G  *  *  S  Y  K  H  W
          I  W  *  G  K  K  S  I  K  S  I  K  R  V  S  E  A  T  S  I  


          .         .         .         .         .         .         
   52989  GTGAGGGGACATAATGTGAGAAAGCAAGCTAAAATGACATTAAGGTGTATGCAAGCTCTG
           V  R  G  H  N  V  R  K  Q  A  K  M  T  L  R  C  M  Q  A  L 
            *  G  D  I  M  *  E  S  K  L  K  *  H  *  G  V  C  K  L  W
          G  E  G  T  *  C  E  K  A  S  *  N  D  I  K  V  Y  A  S  S  


          .         .         .         .         .         .         
   53049  GTTCGAGTCCAGTCTCGTGTGCTTGACCAACGCAAACGCTTGTCTCATGACGGTAGTCGC
           V  R  V  Q  S  R  V  L  D  Q  R  K  R  L  S  H  D  G  S  R 
            F  E  S  S  L  V  C  L  T  N  A  N  A  C  L  M  T  V  V  A
          G  S  S  P  V  S  C  A  *  P  T  Q  T  L  V  S  *  R  *  S  


          .         .         .         .         .         .         
   53109  AAATCCGCGTTCAGTGACTCTCACGCTGTTTTTGAATCTCGCTATCTTCAAGATTTGTCA
           K  S  A  F  S  D  S  H  A  V  F  E  S  R  Y  L  Q  D  L  S 
            N  P  R  S  V  T  L  T  L  F  L  N  L  A  I  F  K  I  C  Q
          Q  I  R  V  Q  *  L  S  R  C  F  *  I  S  L  S  S  R  F  V  


          .         .     :      .         .         .         .         
   53169  GATCGACAATCCATG : TCAAGAGAAGGAAGCAGCGCCGCGGAAGATTGGGATGACCGACCA
           D  R  Q  S  M  :  S  R  E  G  S  S  A  A  E  D  W  D  D  R  P 
            I  D  N  P  C :   Q  E  K  E  A  A  P  R  K  I  G  M  T  D  H
          R  S  T  I  H   : V  K  R  R  K  Q  R  R  G  R  L  G  *  P  T  


          .         .         .         .         .         .         
   53529  CACACGATAGACGCAGTGAAAGTGATGCTACAACGGAGACGGGACACAGCATTGAGACAT
           H  T  I  D  A  V  K  V  M  L  Q  R  R  R  D  T  A  L  R  H 
            T  R  *  T  Q  *  K  *  C  Y  N  G  D  G  T  Q  H  *  D  M
          T  H  D  R  R  S  E  S  D  A  T  T  E  T  G  H  S  I  E  T  


          .         .         .         .      :     .         .         
   53589  GACAAGACTAATTTGTCACAAGCTTTCTCTCAAAAG : ATGTGGAGGACGGTTGGTAACCAA
           D  K  T  N  L  S  Q  A  F  S  Q  K  :  M  W  R  T  V  G  N  Q 
            T  R  L  I  C  H  K  L  S  L  K  R :   C  G  G  R  L  V  T  N
          *  Q  D  *  F  V  T  S  F  L  S  K   : D  V  E  D  G  W  *  P  


          .         .         .         .         .         .         
   53727  TCCACGGAAGGACACCACGAGGTAGAACTTGAAGAGGAAAGGCCAAAATGGCTTGACCGG
           S  T  E  G  H  H  E  V  E  L  E  E  E  R  P  K  W  L  D  R 
            P  R  K  D  T  T  R  *  N  L  K  R  K  G  Q  N  G  L  T  G
          I  H  G  R  T  P  R  G  R  T  *  R  G  K  A  K  M  A  *  P  


          .         .         .         .         .         .         
   53787  TGGATGGCTACTAGACCGTGGGATAAACGAGCTAGTAGTAGAGCTTCGGTTGACCAAAGG
           W  M  A  T  R  P  W  D  K  R  A  S  S  R  A  S  V  D  Q  R 
            G  W  L  L  D  R  G  I  N  E  L  V  V  E  L  R  L  T  K  G
          V  D  G  Y  *  T  V  G  *  T  S  *  *  *  S  F  G  *  P  K  


          .         .         .         .         .         .         
   53847  GTTTCAGTTAAAACCGTTGAAATCGACACTTCTCAGCCTTACTCAAGAACAGGAGCAGGA
           V  S  V  K  T  V  E  I  D  T  S  Q  P  Y  S  R  T  G  A  G 
            F  Q  L  K  P  L  K  S  T  L  L  S  L  T  Q  E  Q  E  Q  E
          G  F  S  *  N  R  *  N  R  H  F  S  A  L  L  K  N  R  S  R  


          .         .         .         .         .         .         
   53907  AGCCCGAGTCGTGGCCAAAGACCTAGTTCCCCATCAAGAACTAGCCACCATTACCAATCC
           S  P  S  R  G  Q  R  P  S  S  P  S  R  T  S  H  H  Y  Q  S 
            A  R  V  V  A  K  D  L  V  P  H  Q  E  L  A  T  I  T  N  P
          K  P  E  S  W  P  K  T  *  F  P  I  K  N  *  P  P  L  P  I  


          .         .         .         .         .         .         
   53967  CGCAATAATTTCTCAGCCACTCCATCTCCGGCTAAGTCTAGACCAATACTTATTCGGTCA
           R  N  N  F  S  A  T  P  S  P  A  K  S  R  P  I  L  I  R  S 
            A  I  I  S  Q  P  L  H  L  R  L  S  L  D  Q  Y  L  F  G  Q
          P  Q  *  F  L  S  H  S  I  S  G  *  V  *  T  N  T  Y  S  V  


          .         .         .         .         .         .         
   54027  GCTAGTCCACGGTGCCAGAGAGACCCGAGGGAAGACCGTGACCGAGCAGCTTATAGTTAT
           A  S  P  R  C  Q  R  D  P  R  E  D  R  D  R  A  A  Y  S  Y 
            L  V  H  G  A  R  E  T  R  G  K  T  V  T  E  Q  L  I  V  I
          S  *  S  T  V  P  E  R  P  E  G  R  P  *  P  S  S  L  *  L  


          .         .         .         .         .         .         
   54087  ACATCAAACACACCAAGCTTGAGATCCAATTATAGTTTCACAGCTAGGAGTGGATGTAGC
           T  S  N  T  P  S  L  R  S  N  Y  S  F  T  A  R  S  G  C  S 
            H  Q  T  H  Q  A  *  D  P  I  I  V  S  Q  L  G  V  D  V  A
          Y  I  K  H  T  K  L  E  I  Q  L  *  F  H  S  *  E  W  M  *  


          .         .         .         .         .         .         
   54147  ATTAGTACCACAATGGTTAATAATGCATCATTGTTGCCTAATTACATGGCGAGTACAGAG
           I  S  T  T  M  V  N  N  A  S  L  L  P  N  Y  M  A  S  T  E 
            L  V  P  Q  W  L  I  M  H  H  C  C  L  I  T  W  R  V  Q  S
          H  *  Y  H  N  G  *  *  C  I  I  V  A  *  L  H  G  E  Y  R  


          .         .         .         .         .         .         
   54207  TCAGCTAAAGCGAGGATCCGGTCTCATAGTGCACCGAGGCAACGGCCCTCAACTCCCGAG
           S  A  K  A  R  I  R  S  H  S  A  P  R  Q  R  P  S  T  P  E 
            Q  L  K  R  G  S  G  L  I  V  H  R  G  N  G  P  Q  L  P  R
          V  S  *  S  E  D  P  V  S  *  C  T  E  A  T  A  L  N  S  R  


          .         .         .         .         .         .         
   54267  AGGGACCGTGCGGGTTTGGTCAAGAAACGGCTCTCGTATCCGGTACCACCGCCAGCGGAG
           R  D  R  A  G  L  V  K  K  R  L  S  Y  P  V  P  P  P  A  E 
            G  T  V  R  V  W  S  R  N  G  S  R  I  R  Y  H  R  Q  R  S
          E  G  P  C  G  F  G  Q  E  T  A  L  V  S  G  T  T  A  S  G  


          .         .         .         .         .         .         
   54327  TATGAGGACAATAATAGCTTAAGGAGTCCAAGCTTTAAGAGTGTGGCTGGTTCACATTTT
           Y  E  D  N  N  S  L  R  S  P  S  F  K  S  V  A  G  S  H  F 
            M  R  T  I  I  A  *  G  V  Q  A  L  R  V  W  L  V  H  I  L
          V  *  G  Q  *  *  L  K  E  S  K  L  *  E  C  G  W  F  T  F  


          .         .         .         .         .         .         
   54387  GGTGGAATGTTAGAGCAGCAATCGAATTACTCTTCATGTTGCACTGAGTCTAACGGTGTT
           G  G  M  L  E  Q  Q  S  N  Y  S  S  C  C  T  E  S  N  G  V 
            V  E  C  *  S  S  N  R  I  T  L  H  V  A  L  S  L  T  V  L
          W  W  N  V  R  A  A  I  E  L  L  F  M  L  H  *  V  *  R  C  


          .         .         .         .         .         .         
   54447  GAGATCTCTCCAGCTTCTACTAGTGACTTTAGGAATTGGCTTAGATGATTGGTGGTGATG
           E  I  S  P  A  S  T  S  D  F  R  N  W  L  R  *  L  V  V  M 
            R  S  L  Q  L  L  L  V  T  L  G  I  G  L  D  D  W  W  *  C
          *  D  L  S  S  F  Y  *  *  L  *  E  L  A  *  M  I  G  G  D  


          .         .         .         .         .         .         
   54507  CCAAATCAACTGTCAAGATCTTTCATCATCCTCCAGGAAAAGAACGTTTTAAAATTTTAT
           P  N  Q  L  S  R  S  F  I  I  L  Q  E  K  N  V  L  K  F  Y 
            Q  I  N  C  Q  D  L  S  S  S  S  R  K  R  T  F  *  N  F  I
          A  K  S  T  V  K  I  F  H  H  P  P  G  K  E  R  F  K  I  L  


          .         .         .         .         .         .         
   54567  ATTCCAGAAGAAAACAAACACTTTTATATTGTGTCGTTGAGGTTGAGTTGTGTTTGGAAG
           I  P  E  E  N  K  H  F  Y  I  V  S  L  R  L  S  C  V  W  K 
            F  Q  K  K  T  N  T  F  I  L  C  R  *  G  *  V  V  F  G  R
          Y  S  R  R  K  Q  T  L  L  Y  C  V  V  E  V  E  L  C  L  E  


          .         .         .         .         .         .        
   54627  ATAAGTTTATTGACCTATTGATCTGTAACTTCATAAGATTTTGAAACGTTAGAAGATTC
           I  S  L  L  T  Y  *  S  V  T  S  *  D  F  E  T  L  E  D   
            *  V  Y  *  P  I  D  L  *  L  H  K  I  L  K  R  *  K  I  
          D  K  F  I  D  L  L  I  C  N  F  I  R  F  *  N  V  R  R  F 


Maximal non-overlapping open reading frames (>= 64 codons)

>42592260+_PGL-5_AGS-1_PPS_1 (52929  53183,53484  53624,53703  54494)	(frame '0';  1185 bp,  395 residues) 
       1  FGKARRALRA LKGLVKLQAL VRGHNVRKQA KMTLRCMQAL VRVQSRVLDQ RKRLSHDGSR 
      61  KSAFSDSHAV FESRYLQDLS DRQSMSREGS SAAEDWDDRP HTIDAVKVML QRRRDTALRH 
     121  DKTNLSQAFS QKMWRTVGNQ STEGHHEVEL EEERPKWLDR WMATRPWDKR ASSRASVDQR 
     181  VSVKTVEIDT SQPYSRTGAG SPSRGQRPSS PSRTSHHYQS RNNFSATPSP AKSRPILIRS 
     241  ASPRCQRDPR EDRDRAAYSY TSNTPSLRSN YSFTARSGCS ISTTMVNNAS LLPNYMASTE 
     301  SAKARIRSHS APRQRPSTPE RDRAGLVKKR LSYPVPPPAE YEDNNSLRSP SFKSVAGSHF 
     361  GGMLEQQSNY SSCCTESNGV EISPASTSDF RNWLR*




PGL   6 (+ strand):      88954     89681
AGS-1 (88954  89081,89173  89263,89405  89681)
SCR   (e 0.922  d 0.994 a 0.869,e 0.978  d 1.000 a 0.999,e 0.848)

  Exon  1    88954    89081 ( 128 n); score: 0.922
    Intron  1    89082    89172 (  91 n);           Pd: 0.994  Pa: 0.869
  Exon  2    89173    89263 (  91 n); score: 0.978
    Intron  2    89264    89404 ( 141 n);           Pd: 1.000  Pa: 0.999
  Exon  3    89405    89681 ( 277 n); score: 0.848

  PGS (88954  89081,89173  89263,89405  89681)	16473+

3-phase translation of AGS-1 (+strand):

          .         .         .         .         .         .         
   88954  CGAATTGAAGGGTGTGGTGGAAGATGGAGTTTTGTCCAACATGTGGGAATCTGTTGCGAT
           R  I  E  G  C  G  G  R  W  S  F  V  Q  H  V  G  I  C  C  D 
            E  L  K  G  V  V  E  D  G  V  L  S  N  M  W  E  S  V  A  I
             N  *  R  V  W  W  K  M  E  F  C  P  T  C  G  N  L  L  R  


          .         .         .         .         .         .         
   89014  ACGAGGGAGGTGGCAATTCGAGATTCTTCTGTTCCACATGTCCATACGTCGCCTACATCC
           T  R  E  V  A  I  R  D  S  S  V  P  H  V  H  T  S  P  T  S 
            R  G  R  W  Q  F  E  I  L  L  F  H  M  S  I  R  R  L  H  P
          Y  E  G  G  G  N  S  R  F  F  C  S  T  C  P  Y  V  A  Y  I  


          .        :   .         .         .         .         .         
   89074  AAAGACAG : GTGGAGATAAAGAAGAAGCAACTTCTGGTTAAGAAATCTATAGAAGCTGTTG
           K  D  R :   W  R  *  R  R  S  N  F  W  L  R  N  L  *  K  L  L 
            K  T   : G  G  D  K  E  E  A  T  S  G  *  E  I  Y  R  S  C  C
          Q  R  Q  :  V  E  I  K  K  K  Q  L  L  V  K  K  S  I  E  A  V  


          .         .         .         .         :  .         .         
   89225  TGACTAAAGATGATATACCCACAGCTGCTGAAACTGAAG : CCCCATGTCCAAGGTGTGGCC
           *  L  K  M  I  Y  P  Q  L  L  K  L  K  :  P  H  V  Q  G  V  A 
            D  *  R  *  Y  T  H  S  C  *  N  *  S :   P  M  S  K  V  W  P
          V  T  K  D  D  I  P  T  A  A  E  T  E   : A  P  C  P  R  C  G  


          .         .         .         .         .         .         
   89426  ACGACAAGGCATACTTCAAATCAATGCAGATTCGTTCAGCAGATGAGCCAGAATCAAGAT
           T  T  R  H  T  S  N  Q  C  R  F  V  Q  Q  M  S  Q  N  Q  D 
            R  Q  G  I  L  Q  I  N  A  D  S  F  S  R  *  A  R  I  K  I
          H  D  K  A  Y  F  K  S  M  Q  I  R  S  A  D  E  P  E  S  R  


          .         .         .         .         .         .         
   89486  TTTATAGATGCTTGAAGTGCGAGTTCACTTGGCGTGAGGAATGAACTGACTGATGATCAT
           F  I  D  A  *  S  A  S  S  L  G  V  R  N  E  L  T  D  D  H 
            L  *  M  L  E  V  R  V  H  L  A  *  G  M  N  *  L  M  I  I
          F  Y  R  C  L  K  C  E  F  T  W  R  E  E  *  T  D  *  *  S  


          .         .         .         .         .         .         
   89546  CTTCTCCGTCTCTTTGCCTCTGCCAATTTTGAAAGTTTCTACTTTTGCAACCTTCTTAGA
           L  L  R  L  F  A  S  A  N  F  E  S  F  Y  F  C  N  L  L  R 
            F  S  V  S  L  P  L  P  I  L  K  V  S  T  F  A  T  F  L  E
          S  S  P  S  L  C  L  C  Q  F  *  K  F  L  L  L  Q  P  S  *  


          .         .         .         .         .         .         
   89606  GTTTGTTTTACCATTGCAAATTTAGCAGATCCTTTATGTACTCTGCTTCTTTCTGTCTCA
           V  C  F  T  I  A  N  L  A  D  P  L  C  T  L  L  L  S  V  S 
            F  V  L  P  L  Q  I  *  Q  I  L  Y  V  L  C  F  F  L  S  H
          S  L  F  Y  H  C  K  F  S  R  S  F  M  Y  S  A  S  F  C  L  


          .         .     
   89666  CAGCTCAATAGTTTCT
           Q  L  N  S  F  
            S  S  I  V  S 
          T  A  Q  *  F   


Maximal non-overlapping open reading frames (>= 64 codons)

>42592260+_PGL-6_AGS-1_PPS_1 (88962  89081,89173  89263,89405  89529)	(frame '2';   333 bp,  111 residues) 
       1  RVWWKMEFCP TCGNLLRYEG GGNSRFFCST CPYVAYIQRQ VEIKKKQLLV KKSIEAVVTK 
      61  DDIPTAAETE APCPRCGHDK AYFKSMQIRS ADEPESRFYR CLKCEFTWRE E*




PGL   7 (+ strand):      96020     97397
AGS-1 (96020  96157,96554  97397)
SCR   (e 1.000  d 0.975 a 0.999,e 0.999)

  Exon  1    96020    96157 ( 138 n); score: 1.000
    Intron  1    96158    96553 ( 396 n);           Pd: 0.975  Pa: 0.999
  Exon  2    96554    97397 ( 844 n); score: 0.999

  PGS (96020  96157,96554  97397)	31323+

3-phase translation of AGS-1 (+strand):

          .         .         .         .         .         .         
   96020  AAGGTAAAAAAAAGCTTTGTGCAGAGAGAGAGAGAAGAAGAAAAATGGGTTTGCTTACGA
           K  V  K  K  S  F  V  Q  R  E  R  E  E  E  K  W  V  C  L  R 
            R  *  K  K  A  L  C  R  E  R  E  K  K  K  N  G  F  A  Y  E
             G  K  K  K  L  C  A  E  R  E  R  R  R  K  M  G  L  L  T  


          .         .         .         .         .         .         
   96080  ACAAGATTGAGAGAGAAGAGCTAAAGCCAGGAGATCACATCTATACTTACAGAGCAATCT
           T  R  L  R  E  K  S  *  S  Q  E  I  T  S  I  L  T  E  Q  S 
            Q  D  *  E  R  R  A  K  A  R  R  S  H  L  Y  L  Q  S  N  L
          N  K  I  E  R  E  E  L  K  P  G  D  H  I  Y  T  Y  R  A  I  


          .         .        :   .         .         .         .         
   96140  TCGCTTATTCTCACCACG : GAATCTTTGTCGGTGGGTCCAAAGTTGTTCATTTCAGACCTG
           S  L  I  L  T  T  :  E  S  L  S  V  G  P  K  L  F  I  S  D  L 
            R  L  F  S  P  R :   N  L  C  R  W  V  Q  S  C  S  F  Q  T  *
          F  A  Y  S  H  H   : G  I  F  V  G  G  S  K  V  V  H  F  R  P  


          .         .         .         .         .         .         
   96596  AACACAACCCCATGGATTCATCAACATCATCAATATCATCATCTTCCTCTGAAGATATCT
           N  T  T  P  W  I  H  Q  H  H  Q  Y  H  H  L  P  L  K  I  S 
            T  Q  P  H  G  F  I  N  I  I  N  I  I  I  F  L  *  R  Y  L
          E  H  N  P  M  D  S  S  T  S  S  I  S  S  S  S  S  E  D  I  


          .         .         .         .         .         .         
   96656  GTTCCATATTTCCTGATTGCGGTTTCAGACAACCGGACAGTGGAGTAGTCCTTTCTTGCT
           V  P  Y  F  L  I  A  V  S  D  N  R  T  V  E  *  S  F  L  A 
            F  H  I  S  *  L  R  F  Q  T  T  G  Q  W  S  S  P  F  L  L
          C  S  I  F  P  D  C  G  F  R  Q  P  D  S  G  V  V  L  S  C  


          .         .         .         .         .         .         
   96716  TAGACTGTTTCCTCAAGAACGGCTCACTCTACTGCTTCGAATATGGAGTCAGTCCATCGG
           *  T  V  S  S  R  T  A  H  S  T  A  S  N  M  E  S  V  H  R 
            R  L  F  P  Q  E  R  L  T  L  L  L  R  I  W  S  Q  S  I  G
          L  D  C  F  L  K  N  G  S  L  Y  C  F  E  Y  G  V  S  P  S  


          .         .         .         .         .         .         
   96776  TTTTCCTAACCAAAGTCCGCGGAGGGACTTGCACAACCGCGCAATCTGATACAACTGATT
           F  S  *  P  K  S  A  E  G  L  A  Q  P  R  N  L  I  Q  L  I 
            F  P  N  Q  S  P  R  R  D  L  H  N  R  A  I  *  Y  N  *  F
          V  F  L  T  K  V  R  G  G  T  C  T  T  A  Q  S  D  T  T  D  


          .         .         .         .         .         .         
   96836  CAGTCATCCACAGGGCAATGTACCTTCTCCAAAACGGATTTGGCAACTACGACATTTTCA
           Q  S  S  T  G  Q  C  T  F  S  K  T  D  L  A  T  T  T  F  S 
            S  H  P  Q  G  N  V  P  S  P  K  R  I  W  Q  L  R  H  F  Q
          S  V  I  H  R  A  M  Y  L  L  Q  N  G  F  G  N  Y  D  I  F  


          .         .         .         .         .         .         
   96896  AGAACAACTGTGAGGATTTCGCGCTCTATTGCAAGACCGGTTTGCTTATAATGGATAAGC
           R  T  T  V  R  I  S  R  S  I  A  R  P  V  C  L  *  W  I  S 
            E  Q  L  *  G  F  R  A  L  L  Q  D  R  F  A  Y  N  G  *  A
          K  N  N  C  E  D  F  A  L  Y  C  K  T  G  L  L  I  M  D  K  


          .         .         .         .         .         .         
   96956  TCGGTGTAGGGAGAAGCGGTCAAGCTTCTTCAATTGTTGGTGCTCCTTTGGCTGCACTCC
           S  V  *  G  E  A  V  K  L  L  Q  L  L  V  L  L  W  L  H  S 
            R  C  R  E  K  R  S  S  F  F  N  C  W  C  S  F  G  C  T  P
          L  G  V  G  R  S  G  Q  A  S  S  I  V  G  A  P  L  A  A  L  


          .         .         .         .         .         .         
   97016  TCTCTTCTCCTTTCAAATTGCTTATTCCAAGTCCCATTGGTGTGGCAACAGTTACTGCTG
           S  L  L  L  S  N  C  L  F  Q  V  P  L  V  W  Q  Q  L  L  L 
            L  F  S  F  Q  I  A  Y  S  K  S  H  W  C  G  N  S  Y  C  W
          L  S  S  P  F  K  L  L  I  P  S  P  I  G  V  A  T  V  T  A  


          .         .         .         .         .         .         
   97076  GTATGTACTGTATGAGTCGCTATGCTACCGATATTGGTGTTAGAAGCGACGTCATTAAGG
           V  C  T  V  *  V  A  M  L  P  I  L  V  L  E  A  T  S  L  R 
            Y  V  L  Y  E  S  L  C  Y  R  Y  W  C  *  K  R  R  H  *  G
          G  M  Y  C  M  S  R  Y  A  T  D  I  G  V  R  S  D  V  I  K  


          .         .         .         .         .         .         
   97136  TCTCAGTTGAGGATTTGGCTCTCAACCTTGACGTAAAGACCATTGAGCAAGGTGAAGAAG
           S  Q  L  R  I  W  L  S  T  L  T  *  R  P  L  S  K  V  K  K 
            L  S  *  G  F  G  S  Q  P  *  R  K  D  H  *  A  R  *  R  R
          V  S  V  E  D  L  A  L  N  L  D  V  K  T  I  E  Q  G  E  E  


          .         .         .         .         .         .         
   97196  AAGAAGAAGACGAAGAAGAAGATTCTGATACCGACTATGTTAGGTGACAAACAGATACCT
           K  K  K  T  K  K  K  I  L  I  P  T  M  L  G  D  K  Q  I  P 
            R  R  R  R  R  R  R  F  *  Y  R  L  C  *  V  T  N  R  Y  L
          E  E  E  D  E  E  E  D  S  D  T  D  Y  V  R  *  Q  T  D  T  


          .         .         .         .         .         .         
   97256  ATCACCTTTGTTCACGAATTTCGATATACATAAGAAAACATTTCAGTTAGAATCCTCATG
           I  T  F  V  H  E  F  R  Y  T  *  E  N  I  S  V  R  I  L  M 
            S  P  L  F  T  N  F  D  I  H  K  K  T  F  Q  L  E  S  S  C
          Y  H  L  C  S  R  I  S  I  Y  I  R  K  H  F  S  *  N  P  H  


          .         .         .         .         .         .         
   97316  TTGGTTTTATGTTCCCTTTATTGCATTTGTTGGCCTATTTTCTGTCTGTACAAAATGAAA
           L  V  L  C  S  L  Y  C  I  C  W  P  I  F  C  L  Y  K  M  K 
            W  F  Y  V  P  F  I  A  F  V  G  L  F  S  V  C  T  K  *  K
          V  G  F  M  F  P  L  L  H  L  L  A  Y  F  L  S  V  Q  N  E  


          .         .         . 
   97376  ACGCAGACGTTTTGGTTTGGGT
           T  Q  T  F  W  F  G  
            R  R  R  F  G  L  G 
          N  A  D  V  L  V  W   


Maximal non-overlapping open reading frames (>= 64 codons)

>42592260+_PGL-7_AGS-1_PPS_1 (96022  96157,96554  97242)	(frame '2';   822 bp,  274 residues) 
       1  GKKKLCAERE RRRKMGLLTN KIEREELKPG DHIYTYRAIF AYSHHGIFVG GSKVVHFRPE 
      61  HNPMDSSTSS ISSSSSEDIC SIFPDCGFRQ PDSGVVLSCL DCFLKNGSLY CFEYGVSPSV 
     121  FLTKVRGGTC TTAQSDTTDS VIHRAMYLLQ NGFGNYDIFK NNCEDFALYC KTGLLIMDKL 
     181  GVGRSGQASS IVGAPLAALL SSPFKLLIPS PIGVATVTAG MYCMSRYATD IGVRSDVIKV 
     241  SVEDLALNLD VKTIEQGEEE EEDEEEDSDT DYVR*




PGL   8 (+ strand):      97475     99239
AGS-1 (97475  97805,98457  98605,98908  99239)
SCR   (e 0.994  d 0.921 a 0.992,e 1.000  d 0.992 a 0.995,e 0.994)

  Exon  1    97475    97805 ( 331 n); score: 0.994
    Intron  1    97806    98456 ( 651 n);           Pd: 0.921  Pa: 0.992
  Exon  2    98457    98605 ( 149 n); score: 1.000
    Intron  2    98606    98907 ( 302 n);           Pd: 0.992  Pa: 0.995
  Exon  3    98908    99239 ( 332 n); score: 0.994

  PGS (97475  97805,98457  98605,98908  99239)	13874+

3-phase translation of AGS-1 (+strand):

          .         .         .         .         .         .         
   97475  CAAAATTAAACCAAAGAAACAAACAATCCTTGTTCTCGCCGAAATAGAGAATTTTGTGAA
           Q  N  *  T  K  E  T  N  N  P  C  S  R  R  N  R  E  F  C  E 
            K  I  K  P  K  K  Q  T  I  L  V  L  A  E  I  E  N  F  V  N
             K  L  N  Q  R  N  K  Q  S  L  F  S  P  K  *  R  I  L  *  


          .         .         .         .         .         .         
   97535  TCTGGGTTTTTAGTTCAGGTGTTAATATAAGATTTTGATCAAAAGAAGACGAGATTCGAT
           S  G  F  L  V  Q  V  L  I  *  D  F  D  Q  K  K  T  R  F  D 
            L  G  F  *  F  R  C  *  Y  K  I  L  I  K  R  R  R  D  S  I
          I  W  V  F  S  S  G  V  N  I  R  F  *  S  K  E  D  E  I  R  


          .         .         .         .         .         .         
   97595  CCGATCCGATCTGATTGAAGAAGAAATGGCGAATCTGTATGTGAAAGCGGTTCCACCACC
           P  I  R  S  D  *  R  R  N  G  E  S  V  C  E  S  G  S  T  T 
            R  S  D  L  I  E  E  E  M  A  N  L  Y  V  K  A  V  P  P  P
          S  D  P  I  *  L  K  K  K  W  R  I  C  M  *  K  R  F  H  H  


          .         .         .         .         .         .         
   97655  GGATATGAATAGGAATACGGAATGGTTCATGTATCCAGGAGTTTGGACGACTTACATGCT
           G  Y  E  *  E  Y  G  M  V  H  V  S  R  S  L  D  D  L  H  A 
            D  M  N  R  N  T  E  W  F  M  Y  P  G  V  W  T  T  Y  M  L
          R  I  *  I  G  I  R  N  G  S  C  I  Q  E  F  G  R  L  T  C  


          .         .         .         .         .         .         
   97715  TATTCTCTTCTTCGGTTGGCTCGTTGTTCTCTCTGTCTCTGGTTGTTCCCCTGGAATGGC
           Y  S  L  L  R  L  A  R  C  S  L  C  L  W  L  F  P  W  N  G 
            I  L  F  F  G  W  L  V  V  L  S  V  S  G  C  S  P  G  M  A
          L  F  S  S  S  V  G  S  L  F  S  L  S  L  V  V  P  L  E  W  


          .         .         .         . :          .         .         
   97775  TTGGACTGTTGTTAATCTCGCTCACTTCGTT : GTAACGTATCACAGCTTCCACTGGATGAA
           L  D  C  C  *  S  R  S  L  R   : C  N  V  S  Q  L  P  L  D  E 
            W  T  V  V  N  L  A  H  F  V  :  V  T  Y  H  S  F  H  W  M  K
          L  G  L  L  L  I  S  L  T  S  L :   *  R  I  T  A  S  T  G  *  


          .         .         .         .         .         .         
   98486  AGGAACTCCTTTTGCAGATGACCAAGGAATCTACAATGGTTTAACTTGGTGGGAACAAAT
           R  N  S  F  C  R  *  P  R  N  L  Q  W  F  N  L  V  G  T  N 
            G  T  P  F  A  D  D  Q  G  I  Y  N  G  L  T  W  W  E  Q  M
          K  E  L  L  L  Q  M  T  K  E  S  T  M  V  *  L  G  G  N  K  


          .         .         .         .         .         .          : 
   98546  GGACAATGGTCAACAGCTTACCCGCAACCGCAAATTTCTTACCCTAGTTCCTGTTGTTCT : 
           G  Q  W  S  T  A  Y  P  Q  P  Q  I  S  Y  P  S  S  C  C  S  : 
            D  N  G  Q  Q  L  T  R  N  R  K  F  L  T  L  V  P  V  V  L : 
          W  T  M  V  N  S  L  P  A  T  A  N  F  L  P  *  F  L  L  F   : 


          .         .         .         .         .         .         
   98908  GTACTTGATTGCATCGCATACAACAGATTACAGACATCCATGGCTGTTCCTCAACACACT
           V  L  D  C  I  A  Y  N  R  L  Q  T  S  M  A  V  P  Q  H  T 
            Y  L  I  A  S  H  T  T  D  Y  R  H  P  W  L  F  L  N  T  L
          C  T  *  L  H  R  I  Q  Q  I  T  D  I  H  G  C  S  S  T  H  


          .         .         .         .         .         .         
   98968  CGCTGTGATGGTTCTCGTTGTTGCCAAGTTCCCCAACATGCACAAGGTACGCATCTTTGG
           R  C  D  G  S  R  C  C  Q  V  P  Q  H  A  Q  G  T  H  L  W 
            A  V  M  V  L  V  V  A  K  F  P  N  M  H  K  V  R  I  F  G
          S  L  *  W  F  S  L  L  P  S  S  P  T  C  T  R  Y  A  S  L  


          .         .         .         .         .         .         
   99028  TATCAATGGTGATAAATAAGTTTCCTTTACGGCAAGAGAACACCTGAAAGAAGGAAAAGG
           Y  Q  W  *  *  I  S  F  L  Y  G  K  R  T  P  E  R  R  K  R 
            I  N  G  D  K  *  V  S  F  T  A  R  E  H  L  K  E  G  K  G
          V  S  M  V  I  N  K  F  P  L  R  Q  E  N  T  *  K  K  E  K  


          .         .         .         .         .         .         
   99088  GGATATAAGCGAACATATATATGTGTAAATGTTCATATGAGTTGGTTTAATTCTCGAGTC
           G  Y  K  R  T  Y  I  C  V  N  V  H  M  S  W  F  N  S  R  V 
            D  I  S  E  H  I  Y  V  *  M  F  I  *  V  G  L  I  L  E  S
          G  I  *  A  N  I  Y  M  C  K  C  S  Y  E  L  V  *  F  S  S  


          .         .         .         .         .         .         
   99148  ATGTTTTTTGTTGGATATTTGTAAGTAAACTCTCTAATTTTGAAGCTTTCATCTTTTACC
           M  F  F  V  G  Y  L  *  V  N  S  L  I  L  K  L  S  S  F  T 
            C  F  L  L  D  I  C  K  *  T  L  *  F  *  S  F  H  L  L  P
          H  V  F  C  W  I  F  V  S  K  L  S  N  F  E  A  F  I  F  Y  


          .         .         .         . 
   99208  TTTTATAATAGACACGAAAAAGCTTTCCCTTC
           F  Y  N  R  H  E  K  A  F  P   
            F  I  I  D  T  K  K  L  S  L  
          L  L  *  *  T  R  K  S  F  P  F 


Maximal non-overlapping open reading frames (>= 64 codons)

>42592260+_PGL-8_AGS-1_PPS_1 (97560  97805,98457  98605,98908  99046)	(frame '1';   531 bp,  177 residues) 
       1  YKILIKRRRD SIRSDLIEEE MANLYVKAVP PPDMNRNTEW FMYPGVWTTY MLILFFGWLV 
      61  VLSVSGCSPG MAWTVVNLAH FVVTYHSFHW MKGTPFADDQ GIYNGLTWWE QMDNGQQLTR 
     121  NRKFLTLVPV VLYLIASHTT DYRHPWLFLN TLAVMVLVVA KFPNMHKVRI FGINGDK*




PGL   9 (+ strand):      99986     101802
AGS-1 (99986  100031,100657  101802)
SCR   (e 1.000  d 0.900 a 0.992,e 0.996)

  Exon  1    99986   100031 (  46 n); score: 1.000
    Intron  1   100032   100656 ( 625 n);           Pd: 0.900  Pa: 0.992
  Exon  2   100657   101802 (1146 n); score: 0.996

  PGS (99986  100031,100657  101802)	34178+

3-phase translation of AGS-1 (+strand):

          .         .         .         .         .      :     .         
   99986  ATTTGTTTCTAGAGTGATTCATGGATTCTTTAAACTACTAATAATG : GATTTTTGTTGTGT
           I  C  F  *  S  D  S  W  I  L  *  T  T  N  N   : G  F  L  L  C 
            F  V  S  R  V  I  H  G  F  F  K  L  L  I  M  :  D  F  C  C  V
             L  F  L  E  *  F  M  D  S  L  N  Y  *  *  W :   I  F  V  V  


          .         .         .         .         .         .         
  100671  CTTAATGAAATAATGGGAGCAGCTGAAGCAAGAGCATTGTGGCAAAGAACAGCTAGTCGT
           L  N  E  I  M  G  A  A  E  A  R  A  L  W  Q  R  T  A  S  R 
            L  M  K  *  W  E  Q  L  K  Q  E  H  C  G  K  E  Q  L  V  V
          S  *  *  N  N  G  S  S  *  S  K  S  I  V  A  K  N  S  *  S  


          .         .         .         .         .         .         
  100731  TGCTTTGTTGTTCATGAGGATGCTAAGATGGCTCCGAGGTTAGCTTGTTGCCAACACCAA
           C  F  V  V  H  E  D  A  K  M  A  P  R  L  A  C  C  Q  H  Q 
            A  L  L  F  M  R  M  L  R  W  L  R  G  *  L  V  A  N  T  N
          L  L  C  C  S  *  G  C  *  D  G  S  E  V  S  L  L  P  T  P  


          .         .         .         .         .         .         
  100791  CAATCTTCTTCGGGCAACACCGAAAAAAACAGCTTTTCTTCCGGAAGTTTTGGAGATTCC
           Q  S  S  S  G  N  T  E  K  N  S  F  S  S  G  S  F  G  D  S 
            N  L  L  R  A  T  P  K  K  T  A  F  L  P  E  V  L  E  I  P
          T  I  F  F  G  Q  H  R  K  K  Q  L  F  F  R  K  F  W  R  F  


          .         .         .         .         .         .         
  100851  TCTGATTTCTCTTGTGATACCAAATGGTGGCTTAAGGGATCAACTGGTTTTGATGAGGAG
           S  D  F  S  C  D  T  K  W  W  L  K  G  S  T  G  F  D  E  E 
            L  I  S  L  V  I  P  N  G  G  L  R  D  Q  L  V  L  M  R  R
          L  *  F  L  L  *  Y  Q  M  V  A  *  G  I  N  W  F  *  *  G  


          .         .         .         .         .         .         
  100911  GTTACAAACTCCTTTCTTGAAGATACCAAATGCAAGAAATTGCATGAATTTGTCGACTTA
           V  T  N  S  F  L  E  D  T  K  C  K  K  L  H  E  F  V  D  L 
            L  Q  T  P  F  L  K  I  P  N  A  R  N  C  M  N  L  S  T  *
          G  Y  K  L  L  S  *  R  Y  Q  M  Q  E  I  A  *  I  C  R  L  


          .         .         .         .         .         .         
  100971  ATCGGAATACGAGAAGAAGAAGACTACAGCTTTATTAGCAAGAAAGCTGACGCTACAACA
           I  G  I  R  E  E  E  D  Y  S  F  I  S  K  K  A  D  A  T  T 
            S  E  Y  E  K  K  K  T  T  A  L  L  A  R  K  L  T  L  Q  H
          N  R  N  T  R  R  R  R  L  Q  L  Y  *  Q  E  S  *  R  Y  N  


          .         .         .         .         .         .         
  101031  CCGTGGTGGAGAAGCACGACGGATAAAGATGAATTAGCTCTCATGGTGGCGACTAAATCG
           P  W  W  R  S  T  T  D  K  D  E  L  A  L  M  V  A  T  K  S 
            R  G  G  E  A  R  R  I  K  M  N  *  L  S  W  W  R  L  N  R
          T  V  V  E  K  H  D  G  *  R  *  I  S  S  H  G  G  D  *  I  


          .         .         .         .         .         .         
  101091  GTTGATCATAATATCCAGAATTGTGATCTTCCTCCACCTCAAAAACTCCACAAGAGTATT
           V  D  H  N  I  Q  N  C  D  L  P  P  P  Q  K  L  H  K  S  I 
            L  I  I  I  S  R  I  V  I  F  L  H  L  K  N  S  T  R  V  F
          G  *  S  *  Y  P  E  L  *  S  S  S  T  S  K  T  P  Q  E  Y  


          .         .         .         .         .         .         
  101151  CACTCCTCGAGTGGAGAAAAAGGGTTTAAAACAGCGGTTAAATCGCCATGGAAGCAAGGA
           H  S  S  S  G  E  K  G  F  K  T  A  V  K  S  P  W  K  Q  G 
            T  P  R  V  E  K  K  G  L  K  Q  R  L  N  R  H  G  S  K  E
          S  L  L  E  W  R  K  R  V  *  N  S  G  *  I  A  M  E  A  R  


          .         .         .         .         .         .         
  101211  GTTTGGAAGGATCGGTTTGAGAGATCTTTGAGTTACAATGGTAGCACAGAGAGCAAGAAC
           V  W  K  D  R  F  E  R  S  L  S  Y  N  G  S  T  E  S  K  N 
            F  G  R  I  G  L  R  D  L  *  V  T  M  V  A  Q  R  A  R  T
          S  L  E  G  S  V  *  E  I  F  E  L  Q  W  *  H  R  E  Q  E  


          .         .         .         .         .         .         
  101271  ACGAGTCCAATGTCTTCCCCTAGAAGTGATGATCTAAGCAAAGGTCAGCTTTTAGAAGCA
           T  S  P  M  S  S  P  R  S  D  D  L  S  K  G  Q  L  L  E  A 
            R  V  Q  C  L  P  L  E  V  M  I  *  A  K  V  S  F  *  K  H
          H  E  S  N  V  F  P  *  K  *  *  S  K  Q  R  S  A  F  R  S  


          .         .         .         .         .         .         
  101331  CTAAGGCATTCTCAAACCAGGGCAAGAGAAGCAGAGAGAGCAGCGAGAGAAGCTTGCGCT
           L  R  H  S  Q  T  R  A  R  E  A  E  R  A  A  R  E  A  C  A 
            *  G  I  L  K  P  G  Q  E  K  Q  R  E  Q  R  E  K  L  A  L
          T  K  A  F  S  N  Q  G  K  R  S  R  E  S  S  E  R  S  L  R  


          .         .         .         .         .         .         
  101391  GAGAAAGACCGTGTGATAACAATCTTGTTGAAACAAGCGAGTCAGATGTTGGCTTATAAG
           E  K  D  R  V  I  T  I  L  L  K  Q  A  S  Q  M  L  A  Y  K 
            R  K  T  V  *  *  Q  S  C  *  N  K  R  V  R  C  W  L  I  S
          *  E  R  P  C  D  N  N  L  V  E  T  S  E  S  D  V  G  L  *  


          .         .         .         .         .         .         
  101451  CAATGGTTAAAGCTTCTTGAAATGGAAGCTCTTTATCTGCAGATGAAGAAGGAAGAAGAA
           Q  W  L  K  L  L  E  M  E  A  L  Y  L  Q  M  K  K  E  E  E 
            N  G  *  S  F  L  K  W  K  L  F  I  C  R  *  R  R  K  K  N
          A  M  V  K  A  S  *  N  G  S  S  L  S  A  D  E  E  G  R  R  


          .         .         .         .         .         .         
  101511  CAAGAGGAACAGGTCAAAGGAATGAATCTGAAGAAGAGAAAACAGAGAGGGGAGAAGAAG
           Q  E  E  Q  V  K  G  M  N  L  K  K  R  K  Q  R  G  E  K  K 
            K  R  N  R  S  K  E  *  I  *  R  R  E  N  R  E  G  R  R  R
          T  R  G  T  G  Q  R  N  E  S  E  E  E  K  T  E  R  G  E  E  


          .         .         .         .         .         .         
  101571  AAAAAGGGTGAGACTGGGAGATATATGATGGCTTTTGCATTAGGGTTTAGTCTCATTGGT
           K  K  G  E  T  G  R  Y  M  M  A  F  A  L  G  F  S  L  I  G 
            K  R  V  R  L  G  D  I  *  W  L  L  H  *  G  L  V  S  L  V
          E  K  G  *  D  W  E  I  Y  D  G  F  C  I  R  V  *  S  H  W  


          .         .         .         .         .         .         
  101631  GCTGGTTTGCTCTTAGGTTGGACTGTTGGATGGTTGCTTCCCTTCTAGAATCTTGAAATG
           A  G  L  L  L  G  W  T  V  G  W  L  L  P  F  *  N  L  E  M 
            L  V  C  S  *  V  G  L  L  D  G  C  F  P  S  R  I  L  K  C
          C  W  F  A  L  R  L  D  C  W  M  V  A  S  L  L  E  S  *  N  


          .         .         .         .         .         .         
  101691  TCTTCTCTTTGGTCACTCATCTTTTCAAGAGTTTTAGGTTTTATAACTTTTCACTTTACC
           S  S  L  W  S  L  I  F  S  R  V  L  G  F  I  T  F  H  F  T 
            L  L  F  G  H  S  S  F  Q  E  F  *  V  L  *  L  F  T  L  P
          V  F  S  L  V  T  H  L  F  K  S  F  R  F  Y  N  F  S  L  Y  


          .         .         .         .         .         . 
  101751  TCTAAAATTGTGTGTATATTTTGTTAATGTATGTATTGTGTGATGTTTGTGT
           S  K  I  V  C  I  F  C  *  C  M  Y  C  V  M  F  V  
            L  K  L  C  V  Y  F  V  N  V  C  I  V  *  C  L  C 
          L  *  N  C  V  Y  I  L  L  M  Y  V  L  C  D  V  C   


Maximal non-overlapping open reading frames (>= 64 codons)

>42592260+_PGL-9_AGS-1_PPS_1 (100019  100031,100657  101678)	(frame '0';  1032 bp,  344 residues) 
       1  TTNNGFLLCL NEIMGAAEAR ALWQRTASRC FVVHEDAKMA PRLACCQHQQ SSSGNTEKNS 
      61  FSSGSFGDSS DFSCDTKWWL KGSTGFDEEV TNSFLEDTKC KKLHEFVDLI GIREEEDYSF 
     121  ISKKADATTP WWRSTTDKDE LALMVATKSV DHNIQNCDLP PPQKLHKSIH SSSGEKGFKT 
     181  AVKSPWKQGV WKDRFERSLS YNGSTESKNT SPMSSPRSDD LSKGQLLEAL RHSQTRAREA 
     241  ERAAREACAE KDRVITILLK QASQMLAYKQ WLKLLEMEAL YLQMKKEEEQ EEQVKGMNLK 
     301  KRKQRGEKKK KGETGRYMMA FALGFSLIGA GLLLGWTVGW LLPF*




PGL  10 (- strand):      105330     104498
AGS-1 (105330  104498)
SCR   (e 0.989)

  Exon  1   105330   104498 ( 833 n); score: 0.989

  PGS (105330  104498)	25524+

3-phase translation of AGS-1 (-strand):

          .         .         .         .         .         .         
  105330  AACCACATAACAAACTCTTTAATGTCACCACAGAGAATGAAGCTATCATCACCACCAGTT
           N  H  I  T  N  S  L  M  S  P  Q  R  M  K  L  S  S  P  P  V 
            T  T  *  Q  T  L  *  C  H  H  R  E  *  S  Y  H  H  H  Q  L
             P  H  N  K  L  F  N  V  T  T  E  N  E  A  I  I  T  T  S  


          .         .         .         .         .         .         
  105270  ACCAACAACGAACCAACCGCCACCGCTTCTGCCGTTAAATCTTGCGGCGGAGGAGGTAAA
           T  N  N  E  P  T  A  T  A  S  A  V  K  S  C  G  G  G  G  K 
            P  T  T  N  Q  P  P  P  L  L  P  L  N  L  A  A  E  E  V  K
          Y  Q  Q  R  T  N  R  H  R  F  C  R  *  I  L  R  R  R  R  *  


          .         .         .         .         .         .         
  105210  GAAACCAGCTCATCGACCACGAGGCATCCAGTGTACCACGGAGTTCGCAAACGCCGATGG
           E  T  S  S  S  T  T  R  H  P  V  Y  H  G  V  R  K  R  R  W 
            K  P  A  H  R  P  R  G  I  Q  C  T  T  E  F  A  N  A  D  G
          R  N  Q  L  I  D  H  E  A  S  S  V  P  R  S  S  Q  T  P  M  


          .         .         .         .         .         .         
  105150  GGAAAATGGGTTTCTGAGATCAGAGAGCCCCGGAAAAAGTCTCGGATTTGGCTCGGATCT
           G  K  W  V  S  E  I  R  E  P  R  K  K  S  R  I  W  L  G  S 
            E  N  G  F  L  R  S  E  S  P  G  K  S  L  G  F  G  S  D  L
          G  K  M  G  F  *  D  Q  R  A  P  E  K  V  S  D  L  A  R  I  


          .         .         .         .         .         .         
  105090  TTTCCGGTGCCGGAGATGGCTGCTAAGGCCTACGACGTGGCAGCGTTTTGTCTAAAAGGT
           F  P  V  P  E  M  A  A  K  A  Y  D  V  A  A  F  C  L  K  G 
            F  R  C  R  R  W  L  L  R  P  T  T  W  Q  R  F  V  *  K  V
          F  S  G  A  G  D  G  C  *  G  L  R  R  G  S  V  L  S  K  R  


          .         .         .         .         .         .         
  105030  AGAAAAGCTCAGCTGAATTTCCCTGAAGAAATCGAGGATCTACCTCGACCGTCCACGTGT
           R  K  A  Q  L  N  F  P  E  E  I  E  D  L  P  R  P  S  T  C 
            E  K  L  S  *  I  S  L  K  K  S  R  I  Y  L  D  R  P  R  V
          *  K  S  S  A  E  F  P  *  R  N  R  G  S  T  S  T  V  H  V  


          .         .         .         .         .         .         
  104970  ACTCCCAGAGATATCCAAGTCGCAGCGGCCAAAGCAGCCAACGCCGTGAAGATCATCAAA
           T  P  R  D  I  Q  V  A  A  A  K  A  A  N  A  V  K  I  I  K 
            L  P  E  I  S  K  S  Q  R  P  K  Q  P  T  P  *  R  S  S  K
          Y  S  Q  R  Y  P  S  R  S  G  Q  S  S  Q  R  R  E  D  H  Q  


          .         .         .         .         .         .         
  104910  ATGGGAGATGATGACGTGGCAGGAATAGACGACGGAGATGATTTCTGGGAAGGCATTGAG
           M  G  D  D  D  V  A  G  I  D  D  G  D  D  F  W  E  G  I  E 
            W  E  M  M  T  W  Q  E  *  T  T  E  M  I  S  G  K  A  L  S
          N  G  R  *  *  R  G  R  N  R  R  R  R  *  F  L  G  R  H  *  


          .         .         .         .         .         .         
  104850  CTGCCTGAGCTTATGATGAGTGGAGGTGGGTGGTCGCCGGAGCCTTTTGTTGCCGGAGAT
           L  P  E  L  M  M  S  G  G  G  W  S  P  E  P  F  V  A  G  D 
            C  L  S  L  *  *  V  E  V  G  G  R  R  S  L  L  L  P  E  M
          A  A  *  A  Y  D  E  W  R  W  V  V  A  G  A  F  C  C  R  R  


          .         .         .         .         .         .         
  104790  GATGCCACGTGGCTTGTCGACGGAGACTTGTATCAGTATCAGTTCATGGCGTGTCTGTGA
           D  A  T  W  L  V  D  G  D  L  Y  Q  Y  Q  F  M  A  C  L  * 
            M  P  R  G  L  S  T  E  T  C  I  S  I  S  S  W  R  V  C  E
          *  C  H  V  A  C  R  R  R  L  V  S  V  S  V  H  G  V  S  V  


          .         .         .         .         .         .         
  104730  GTGTTGCTGTCGATTGTGTCGTATTCGTTATACGTGTACGTTGTATCGTTATTGTGTTGG
           V  L  L  S  I  V  S  Y  S  L  Y  V  Y  V  V  S  L  L  C  W 
            C  C  C  R  L  C  R  I  R  Y  T  C  T  L  Y  R  Y  C  V  G
          S  V  A  V  D  C  V  V  F  V  I  R  V  R  C  I  V  I  V  L  


          .         .         .         .         .         .         
  104670  CTCACTTAATTTAATGCATATGCATGTATATTTTCATTTATTTGTTTCTAGTTTATTGTT
           L  T  *  F  N  A  Y  A  C  I  F  S  F  I  C  F  *  F  I  V 
            S  L  N  L  M  H  M  H  V  Y  F  H  L  F  V  S  S  L  L  F
          A  H  L  I  *  C  I  C  M  Y  I  F  I  Y  L  F  L  V  Y  C  


          .         .         .         .         .         .         
  104610  TTACGCGATTAATAATTAGATACCTGTTTCTCAAGTTAGTTATCAGGTTTGTACGCATCT
           L  R  D  *  *  L  D  T  C  F  S  S  *  L  S  G  L  Y  A  S 
            Y  A  I  N  N  *  I  P  V  S  Q  V  S  Y  Q  V  C  T  H  L
          F  T  R  L  I  I  R  Y  L  F  L  K  L  V  I  R  F  V  R  I  


          .         .         .         .         .         .  
  104550  ACAAAAATACGTATAAGTGTATGTTCTTATATACAGTTTTTGTTTGCATAAGT
           T  K  I  R  I  S  V  C  S  Y  I  Q  F  L  F  A  *   
            Q  K  Y  V  *  V  Y  V  L  I  Y  S  F  C  L  H  K  
          Y  K  N  T  Y  K  C  M  F  L  Y  T  V  F  V  C  I  S 


Maximal non-overlapping open reading frames (>= 64 codons)

>42592260-_PGL-10_AGS-1_PPS_1 (105330  104731)	(frame '0';   597 bp,  199 residues) 
       1  NHITNSLMSP QRMKLSSPPV TNNEPTATAS AVKSCGGGGK ETSSSTTRHP VYHGVRKRRW 
      61  GKWVSEIREP RKKSRIWLGS FPVPEMAAKA YDVAAFCLKG RKAQLNFPEE IEDLPRPSTC 
     121  TPRDIQVAAA KAANAVKIIK MGDDDVAGID DGDDFWEGIE LPELMMSGGG WSPEPFVAGD 
     181  DATWLVDGDL YQYQFMACL*




PGL  11 (+ strand):      117030     118627
AGS-1 (117030  118627)
SCR   (e 0.992)

  Exon  1   117030   118627 (1598 n); score: 0.992

  PGS (117030  118627)	7567+

3-phase translation of AGS-1 (+strand):

          .         .         .         .         .         .         
  117030  ACTCGCCACTTTCCTCGAGAAAACGAAAAAAAAAGATGGTAGGAAGAAGAAAAGCTTTAC
           T  R  H  F  P  R  E  N  E  K  K  R  W  *  E  E  E  K  L  Y 
            L  A  T  F  L  E  K  T  K  K  K  D  G  R  K  K  K  S  F  T
             S  P  L  S  S  R  K  R  K  K  K  M  V  G  R  R  K  A  L  


          .         .         .         .         .         .         
  117090  TCTTTTCTCTCTGTTTCTTCTTCCTCTCTCTTCCTTCCTTCTCTTCCCTTCCATCCTTCC
           S  F  L  S  V  S  S  S  S  L  F  L  P  S  L  P  F  H  P  S 
            L  F  S  L  F  L  L  P  L  S  S  F  L  L  F  P  S  I  L  P
          L  F  S  L  C  F  F  F  L  S  L  P  S  F  S  S  L  P  S  F  


          .         .         .         .         .         .         
  117150  AAACCCTATTCCCCAATTCTCATTCCCTTCCTTGTGCTTCTCCCGTCTCATTCCAACCCG
           K  P  Y  S  P  I  L  I  P  F  L  V  L  L  P  S  H  S  N  P 
            N  P  I  P  Q  F  S  F  P  S  L  C  F  S  R  L  I  P  T  R
          Q  T  L  F  P  N  S  H  S  L  P  C  A  S  P  V  S  F  Q  P  


          .         .         .         .         .         .         
  117210  ACTCCGACTCCGAGTCACTGCTAGAATCCGAATTTGAATCCGGATCCGACTCCGAGTCTT
           T  P  T  P  S  H  C  *  N  P  N  L  N  P  D  P  T  P  S  L 
            L  R  L  R  V  T  A  R  I  R  I  *  I  R  I  R  L  R  V  F
          D  S  D  S  E  S  L  L  E  S  E  F  E  S  G  S  D  S  E  S  


          .         .         .         .         .         .         
  117270  CTTCTTCCATTACTCTAAACCTCGACCACATCGATGCTCTCTCCTCCAACAAAACACCCG
           L  L  P  L  L  *  T  S  T  T  S  M  L  S  P  P  T  K  H  P 
            F  F  H  Y  S  K  P  R  P  H  R  C  S  L  L  Q  Q  N  T  R
          S  S  S  I  T  L  N  L  D  H  I  D  A  L  S  S  N  K  T  P  


          .         .         .         .         .         .         
  117330  ACGAGCTATTCAGCTCCCGTCTCCAACGTGACTCCCGGCGCGTGAAATCTATCGCCACAC
           T  S  Y  S  A  P  V  S  N  V  T  P  G  A  *  N  L  S  P  H 
            R  A  I  Q  L  P  S  P  T  *  L  P  A  R  E  I  Y  R  H  T
          D  E  L  F  S  S  R  L  Q  R  D  S  R  R  V  K  S  I  A  T  


          .         .         .         .         .         .         
  117390  TCGCCGCTCAAATCCCCGGAAGAAACGTGACTCACGCGCCACGACCCGGTGGATTCAGCA
           S  P  L  K  S  P  E  E  T  *  L  T  R  H  D  P  V  D  S  A 
            R  R  S  N  P  R  K  K  R  D  S  R  A  T  T  R  W  I  Q  Q
          L  A  A  Q  I  P  G  R  N  V  T  H  A  P  R  P  G  G  F  S  


          .         .         .         .         .         .         
  117450  GCTCAGTCGTCTCTGGTCTCTCTCAAGGAAGCGGTGAATACTTCACGCGCCTCGGTGTCG
           A  Q  S  S  L  V  S  L  K  E  A  V  N  T  S  R  A  S  V  S 
            L  S  R  L  W  S  L  S  R  K  R  *  I  L  H  A  P  R  C  R
          S  S  V  V  S  G  L  S  Q  G  S  G  E  Y  F  T  R  L  G  V  


          .         .         .         .         .         .         
  117510  GCACTCCGGCGAGATATGTTTACATGGTGCTCGACACCGGCAGCGACATCGTCTGGCTAC
           A  L  R  R  D  M  F  T  W  C  S  T  P  A  A  T  S  S  G  Y 
            H  S  G  E  I  C  L  H  G  A  R  H  R  Q  R  H  R  L  A  T
          G  T  P  A  R  Y  V  Y  M  V  L  D  T  G  S  D  I  V  W  L  


          .         .         .         .         .         .         
  117570  AATGCGCTCCTTGTCGGAGATGCTACTCTCAATCCGACCCGATATTCGACCCGAGAAAAT
           N  A  L  L  V  G  D  A  T  L  N  P  T  R  Y  S  T  R  E  N 
            M  R  S  L  S  E  M  L  L  S  I  R  P  D  I  R  P  E  K  I
          Q  C  A  P  C  R  R  C  Y  S  Q  S  D  P  I  F  D  P  R  K  


          .         .         .         .         .         .         
  117630  CCAAGACCTATGCCACAATCCCCTGTTCTTCACCTCACTGCCGCCGATTAGACTCCGCCG
           P  R  P  M  P  Q  S  P  V  L  H  L  T  A  A  D  *  T  P  P 
            Q  D  L  C  H  N  P  L  F  F  T  S  L  P  P  I  R  L  R  R
          S  K  T  Y  A  T  I  P  C  S  S  P  H  C  R  R  L  D  S  A  


          .         .         .         .         .         .         
  117690  GATGCAACACCCGTCGTAAGACTTGTCTCTACCAAGTCTCTTACGGAGATGGTTCTTTCA
           D  A  T  P  V  V  R  L  V  S  T  K  S  L  T  E  M  V  L  S 
            M  Q  H  P  S  *  D  L  S  L  P  S  L  L  R  R  W  F  F  H
          G  C  N  T  R  R  K  T  C  L  Y  Q  V  S  Y  G  D  G  S  F  


          .         .         .         .         .         .         
  117750  CCGTCGGCGATTTCTCCACCGAAACGCTAACTTTCCGGCGAAATCGCGTTAAAGGCGTTG
           P  S  A  I  S  P  P  K  R  *  L  S  G  E  I  A  L  K  A  L 
            R  R  R  F  L  H  R  N  A  N  F  P  A  K  S  R  *  R  R  C
          T  V  G  D  F  S  T  E  T  L  T  F  R  R  N  R  V  K  G  V  


          .         .         .         .         .         .         
  117810  CTCTCGGATGTGGCCACGACAACGAAGGTCTCTTCGTCGGAGCCGCCGGTTTATTAGGAC
           L  S  D  V  A  T  T  T  K  V  S  S  S  E  P  P  V  Y  *  D 
            S  R  M  W  P  R  Q  R  R  S  L  R  R  S  R  R  F  I  R  T
          A  L  G  C  G  H  D  N  E  G  L  F  V  G  A  A  G  L  L  G  


          .         .         .         .         .         .         
  117870  TCGGTAAAGGTAAATTATCGTTCCCCGGTCAAACCGGTCACCGGTTTAATCAGAAATTCT
           S  V  K  V  N  Y  R  S  P  V  K  P  V  T  G  L  I  R  N  S 
            R  *  R  *  I  I  V  P  R  S  N  R  S  P  V  *  S  E  I  L
          L  G  K  G  K  L  S  F  P  G  Q  T  G  H  R  F  N  Q  K  F  


          .         .         .         .         .         .         
  117930  CTTACTGTTTAGTCGACAGATCCGCTTCTTCGAAACCTTCCTCGGTCGTCTTCGGAAACG
           L  T  V  *  S  T  D  P  L  L  R  N  L  P  R  S  S  S  E  T 
            L  L  F  S  R  Q  I  R  F  F  E  T  F  L  G  R  L  R  K  R
          S  Y  C  L  V  D  R  S  A  S  S  K  P  S  S  V  V  F  G  N  


          .         .         .         .         .         .         
  117990  CCGCCGTATCACGAATCGCGAGATTCACGCCACTTTTGTCAAACCCAAAACTCGACACTT
           P  P  Y  H  E  S  R  D  S  R  H  F  C  Q  T  Q  N  S  T  L 
            R  R  I  T  N  R  E  I  H  A  T  F  V  K  P  K  T  R  H  F
          A  A  V  S  R  I  A  R  F  T  P  L  L  S  N  P  K  L  D  T  


          .         .         .         .         .         .         
  118050  TCTACTACGTCGGGCTTCTGGGAATTAGCGTCGGAGGGACACGTGTCCCCGGCGTAACGG
           S  T  T  S  G  F  W  E  L  A  S  E  G  H  V  S  P  A  *  R 
            L  L  R  R  A  S  G  N  *  R  R  R  D  T  C  P  R  R  N  G
          F  Y  Y  V  G  L  L  G  I  S  V  G  G  T  R  V  P  G  V  T  


          .         .         .         .         .         .         
  118110  CTTCTCTTTTTAAACTTGACCAGATCGGTAACGGTGGAGTTATTATCGATTCGGGTACGT
           L  L  F  L  N  L  T  R  S  V  T  V  E  L  L  S  I  R  V  R 
            F  S  F  *  T  *  P  D  R  *  R  W  S  Y  Y  R  F  G  Y  V
          A  S  L  F  K  L  D  Q  I  G  N  G  G  V  I  I  D  S  G  T  


          .         .         .         .         .         .         
  118170  CTGTGACCCGGTTGATCCGACCAGCTTATATTGCTATGAGAGACGCGTTCCGGGTCGGAG
           L  *  P  G  *  S  D  Q  L  I  L  L  *  E  T  R  S  G  S  E 
            C  D  P  V  D  P  T  S  L  Y  C  Y  E  R  R  V  P  G  R  S
          S  V  T  R  L  I  R  P  A  Y  I  A  M  R  D  A  F  R  V  G  


          .         .         .         .         .         .         
  118230  CTAAGACATTGAAAAGAGCTCCGGATTTCTCACTCTTCGACACGTGTTTCGATCTCTCCA
           L  R  H  *  K  E  L  R  I  S  H  S  S  T  R  V  S  I  S  P 
            *  D  I  E  K  S  S  G  F  L  T  L  R  H  V  F  R  S  L  Q
          A  K  T  L  K  R  A  P  D  F  S  L  F  D  T  C  F  D  L  S  


          .         .         .         .         .         .         
  118290  ATATGAACGAGGTTAAAGTACCGACGGTGGTTTTACATTTCCGTGGAGCTGACGTATCAC
           I  *  T  R  L  K  Y  R  R  W  F  Y  I  S  V  E  L  T  Y  H 
            Y  E  R  G  *  S  T  D  G  G  F  T  F  P  W  S  *  R  I  T
          N  M  N  E  V  K  V  P  T  V  V  L  H  F  R  G  A  D  V  S  


          .         .         .         .         .         .         
  118350  TTCCGGCGACGAATTACCTGATCCCTGTGGATACCAACGGCAAGTTCTGTTTTGCGTTTG
           F  R  R  R  I  T  *  S  L  W  I  P  T  A  S  S  V  L  R  L 
            S  G  D  E  L  P  D  P  C  G  Y  Q  R  Q  V  L  F  C  V  C
          L  P  A  T  N  Y  L  I  P  V  D  T  N  G  K  F  C  F  A  F  


          .         .         .         .         .         .         
  118410  CCGGTACGATGGGCGGACTATCCATAATTGGGAATATCCAGCAACAGGGTTTCCGGGTTG
           P  V  R  W  A  D  Y  P  *  L  G  I  S  S  N  R  V  S  G  L 
            R  Y  D  G  R  T  I  H  N  W  E  Y  P  A  T  G  F  P  G  C
          A  G  T  M  G  G  L  S  I  I  G  N  I  Q  Q  Q  G  F  R  V  


          .         .         .         .         .         .         
  118470  TATACGACTTAGCGAGTTCCCGGGTCGGGTTTGCTCCAGGAGGATGCGCTTAATAATTAG
           Y  T  T  *  R  V  P  G  S  G  L  L  Q  E  D  A  L  N  N  * 
            I  R  L  S  E  F  P  G  R  V  C  S  R  R  M  R  L  I  I  R
          V  Y  D  L  A  S  S  R  V  G  F  A  P  G  G  C  A  *  *  L  


          .         .         .         .         .         .         
  118530  ATCTGACCGGAGCCGGTACGGATAATGTACTTTTGTTTTCTCAATTTAATGCTTAGACTT
           I  *  P  E  P  V  R  I  M  Y  F  C  F  L  N  L  M  L  R  L 
            S  D  R  S  R  Y  G  *  C  T  F  V  F  S  I  *  C  L  D  L
          D  L  T  G  A  G  T  D  N  V  L  L  F  S  Q  F  N  A  *  T  


          .         .         .         .       
  118590  GTTTTTTTTTTTTTTATAAATCGGACAAGTGAATCTTT
           V  F  F  F  F  I  N  R  T  S  E  S   
            F  F  F  F  L  *  I  G  Q  V  N  L  
          C  F  F  F  F  Y  K  S  D  K  *  I  F 


Maximal non-overlapping open reading frames (>= 64 codons)

>42592260+_PGL-11_AGS-1_PPS_1 (117032  118522)	(frame '2';  1488 bp,  496 residues) 
       1  SPLSSRKRKK KMVGRRKALL FSLCFFFLSL PSFSSLPSFQ TLFPNSHSLP CASPVSFQPD 
      61  SDSESLLESE FESGSDSESS SSITLNLDHI DALSSNKTPD ELFSSRLQRD SRRVKSIATL 
     121  AAQIPGRNVT HAPRPGGFSS SVVSGLSQGS GEYFTRLGVG TPARYVYMVL DTGSDIVWLQ 
     181  CAPCRRCYSQ SDPIFDPRKS KTYATIPCSS PHCRRLDSAG CNTRRKTCLY QVSYGDGSFT 
     241  VGDFSTETLT FRRNRVKGVA LGCGHDNEGL FVGAAGLLGL GKGKLSFPGQ TGHRFNQKFS 
     301  YCLVDRSASS KPSSVVFGNA AVSRIARFTP LLSNPKLDTF YYVGLLGISV GGTRVPGVTA 
     361  SLFKLDQIGN GGVIIDSGTS VTRLIRPAYI AMRDAFRVGA KTLKRAPDFS LFDTCFDLSN 
     421  MNEVKVPTVV LHFRGADVSL PATNYLIPVD TNGKFCFAFA GTMGGLSIIG NIQQQGFRVV 
     481  YDLASSRVGF APGGCA*




PGL  12 (+ strand):      136805     138116
AGS-1 (136805  136816,136935  137758,137848  138116)
SCR   (e 1.000  d 0.999 a 0.979,e 0.959  d 0.991 a 0.925,e 0.924)

  Exon  1   136805   136816 (  12 n); score: 1.000
    Intron  1   136817   136934 ( 118 n);           Pd: 0.999  Pa: 0.979
  Exon  2   136935   137758 ( 824 n); score: 0.959
    Intron  2   137759   137847 (  89 n);           Pd: 0.991  Pa: 0.925
  Exon  3   137848   138116 ( 269 n); score: 0.924

  PGS (136805  136816,136935  137758,137848  138116)	3542+

3-phase translation of AGS-1 (+strand):

          .         .  :         .         .         .         .         
  136805  AGTCTCAACAAG : TTTGCACTTTCTTCAAGAAGCCAACGAAAAGTAAAAACATAAGAAAAA
           S  L  N  K  :  F  A  L  S  S  R  S  Q  R  K  V  K  T  *  E  K 
            V  S  T  S :   L  H  F  L  Q  E  A  N  E  K  *  K  H  K  K  K
             S  Q  Q   : V  C  T  F  F  K  K  P  T  K  S  K  N  I  R  K  


          .         .         .         .         .         .         
  136983  GAACCATTGACGCTGATGAAGAAGACGGAGATTCGAAAAGCGAAAGCTCTATTCTACAAA
           E  P  L  T  L  M  K  K  T  E  I  R  K  A  K  A  L  F  Y  K 
            N  H  *  R  *  *  R  R  R  R  F  E  K  R  K  L  Y  S  T  K
          R  T  I  D  A  D  E  E  D  G  D  S  K  S  E  S  S  I  L  Q  


          .         .         .         .         .         .         
  137043  ATCTAAAGAAAGTTGCAAAACCCGATAGCAAGTTATACTTTTCTTCTGGACCATCTAAGA
           I  *  R  K  L  Q  N  P  I  A  S  Y  T  F  L  L  D  H  L  R 
            S  K  E  S  C  K  T  R  *  Q  V  I  L  F  F  W  T  I  *  E
          N  L  K  K  V  A  K  P  D  S  K  L  Y  F  S  S  G  P  S  K  


          .         .         .         .         .         .         
  137103  GTTCTACTACAACGAGTGGAGCTCCTGAGAGGTCCGTCTTTCACTACGATTCATCCAAGG
           V  L  L  Q  R  V  E  L  L  R  G  P  S  F  T  T  I  H  P  R 
            F  Y  Y  N  E  W  S  S  *  E  V  R  L  S  L  R  F  I  Q  G
          S  S  T  T  T  S  G  A  P  E  R  S  V  F  H  Y  D  S  S  K  


          .         .         .         .         .         .         
  137163  AAATCCAGGTTCAGAACGACAGTGGAGCAACAGCAACCCTTGAAACTGAGACCGACTTCA
           K  S  R  F  R  T  T  V  E  Q  Q  Q  P  L  K  L  R  P  T  S 
            N  P  G  S  E  R  Q  W  S  N  S  N  P  *  N  *  D  R  L  Q
          E  I  Q  V  Q  N  D  S  G  A  T  A  T  L  E  T  E  T  D  F  


          .         .         .         .         .         .         
  137223  ATCAAGACGCACGAGCTATCCGTGAGAGAGTTCTTAAAAAAGCAGACGAAGCATTGAAAG
           I  K  T  H  E  L  S  V  R  E  F  L  K  K  Q  T  K  H  *  K 
            S  R  R  T  S  Y  P  *  E  S  S  *  K  S  R  R  S  I  E  R
          N  Q  D  A  R  A  I  R  E  R  V  L  K  K  A  D  E  A  L  K  


          .         .         .         .         .         .         
  137283  GGAATAAGAAAAAGGCTTCTGATGAGAAGCTGTACAAAGGAATTCATGGATATACAGATC
           G  I  R  K  R  L  L  M  R  S  C  T  K  E  F  M  D  I  Q  I 
            E  *  E  K  G  F  *  *  E  A  V  Q  R  N  S  W  I  Y  R  S
          G  N  K  K  K  A  S  D  E  K  L  Y  K  G  I  H  G  Y  T  D  


          .         .         .         .         .         .         
  137343  ACAAAGCTGGGTTTAGAAGAGAACAAACAATCTCGAGCGAGAAAGCTGGAGGCTCACACG
           T  K  L  G  L  E  E  N  K  Q  S  R  A  R  K  L  E  A  H  T 
            Q  S  W  V  *  K  R  T  N  N  L  E  R  E  S  W  R  L  T  R
          H  K  A  G  F  R  R  E  Q  T  I  S  S  E  K  A  G  G  S  H  


          .         .         .         .         .         .         
  137403  GGCCATTAAGAGCTTCTGCTCACATAAGAGTGTCGGCTAGATTCGATTACCAGCCAGACA
           G  H  *  E  L  L  L  T  *  E  C  R  L  D  S  I  T  S  Q  T 
            A  I  K  S  F  C  S  H  K  S  V  G  *  I  R  L  P  A  R  H
          G  P  L  R  A  S  A  H  I  R  V  S  A  R  F  D  Y  Q  P  D  


          .         .         .         .         .         .         
  137463  TTTGCAAGGATTACAAAGAAACCGGATACTGTGGATATGGAGATTCGTGTAAGTTCTTGC
           F  A  R  I  T  K  K  P  D  T  V  D  M  E  I  R  V  S  S  C 
            L  Q  G  L  Q  R  N  R  I  L  W  I  W  R  F  V  *  V  L  A
          I  C  K  D  Y  K  E  T  G  Y  C  G  Y  G  D  S  C  K  F  L  


          .         .         .         .         .         .         
  137523  ATGACCGTGGGGATTACAAACCAGGATGGCAGATAGAGAAAGAGTGGGAAGAAGCAGAGA
           M  T  V  G  I  T  N  Q  D  G  R  *  R  K  S  G  K  K  Q  R 
            *  P  W  G  L  Q  T  R  M  A  D  R  E  R  V  G  R  S  R  E
          H  D  R  G  D  Y  K  P  G  W  Q  I  E  K  E  W  E  E  A  E  


          .         .         .         .         .         .         
  137583  AAGTTAGGAAGAGAAATAAAGCTATGGGAGTTGAGGATGAAGATGATGAGGCTGACAAGG
           K  L  G  R  E  I  K  L  W  E  L  R  M  K  M  M  R  L  T  R 
            S  *  E  E  K  *  S  Y  G  S  *  G  *  R  *  *  G  *  Q  G
          K  V  R  K  R  N  K  A  M  G  V  E  D  E  D  D  E  A  D  K  


          .         .         .         .         .         .         
  137643  ATAGCGACGAAGACGAAAATGCATTGCCCTTTGCTTGCTTCATTTGCAGGGAGCCTTTTG
           I  A  T  K  T  K  M  H  C  P  L  L  A  S  F  A  G  S  L  L 
            *  R  R  R  R  K  C  I  A  L  C  L  L  H  L  Q  G  A  F  C
          D  S  D  E  D  E  N  A  L  P  F  A  C  F  I  C  R  E  P  F  


          .         .         .         .         .         .      :     
  137703  TTGATCCAGTTGTCACCAAATGCAAGCATTACTTCTGTGAGCATTGTGCTTTAAAG : CATC
           L  I  Q  L  S  P  N  A  S  I  T  S  V  S  I  V  L  *  S :   I 
            *  S  S  C  H  Q  M  Q  A  L  L  L  *  A  L  C  F  K   : A  S
          V  D  P  V  V  T  K  C  K  H  Y  F  C  E  H  C  A  L  K  :  H  


          .         .         .         .         .         .         
  137852  ACACGAAGAACAAGAAGTGCTTTGTGTGTAACCAACCAACAATGGGGATTTTCAATGCAG
           T  R  R  T  R  S  A  L  C  V  T  N  Q  Q  W  G  F  S  M  Q 
            H  E  E  Q  E  V  L  C  V  *  P  T  N  N  G  D  F  Q  C  S
          H  T  K  N  K  K  C  F  V  C  N  Q  P  T  M  G  I  F  N  A  


          .         .         .         .         .         .         
  137912  CACATGAGATCAAGAAGAGAATGGCTGAAGAACGGAGTAAAGCTGAACAAGGATTGTGAA
           H  M  R  S  R  R  E  W  L  K  N  G  V  K  L  N  K  D  C  E 
            T  *  D  Q  E  E  N  G  *  R  T  E  *  S  *  T  R  I  V  K
          A  H  E  I  K  K  R  M  A  E  E  R  S  K  A  E  Q  G  L  *  


          .         .         .         .         .         .         
  137972  GTCCTTGTTTCACTGGACAAAAAGGCAAAAACTATATTTGGTTATTTACTTGAGGAAAGC
           V  L  V  S  L  D  K  K  A  K  T  I  F  G  Y  L  L  E  E  S 
            S  L  F  H  W  T  K  R  Q  K  L  Y  L  V  I  Y  L  R  K  A
          S  P  C  F  T  G  Q  K  G  K  N  Y  I  W  L  F  T  *  G  K  


          .         .         .         .         .         .         
  138032  TTTTTGTTTTGTTGTACTCACTGGCCTATATATATTCATTCGGATGACGACGATAGTTGT
           F  L  F  C  C  T  H  W  P  I  Y  I  H  S  D  D  D  D  S  C 
            F  C  F  V  V  L  T  G  L  Y  I  F  I  R  M  T  T  I  V  V
          L  F  V  L  L  Y  S  L  A  Y  I  Y  S  F  G  *  R  R  *  L  


          .         .         .    
  138092  TTCAAACTGATTAACTTTTAAATTT
           F  K  L  I  N  F  *  I  
            S  N  *  L  T  F  K  F 
          F  Q  T  D  *  L  L  N   


Maximal non-overlapping open reading frames (>= 64 codons)

>42592260+_PGL-12_AGS-1_PPS_1 (136807  136816,136935  137758,137848  137970)	(frame '2';   954 bp,  318 residues) 
       1  SQQVCTFFKK PTKSKNIRKR TIDADEEDGD SKSESSILQN LKKVAKPDSK LYFSSGPSKS 
      61  STTTSGAPER SVFHYDSSKE IQVQNDSGAT ATLETETDFN QDARAIRERV LKKADEALKG 
     121  NKKKASDEKL YKGIHGYTDH KAGFRREQTI SSEKAGGSHG PLRASAHIRV SARFDYQPDI 
     181  CKDYKETGYC GYGDSCKFLH DRGDYKPGWQ IEKEWEEAEK VRKRNKAMGV EDEDDEADKD 
     241  SDEDENALPF ACFICREPFV DPVVTKCKHY FCEHCALKHH TKNKKCFVCN QPTMGIFNAA 
     301  HEIKKRMAEE RSKAEQGL*




PGL  13 (+ strand):      142024     143175
AGS-1 (142024  142281,142424  142639,142711  143175)
SCR   (e 0.996  d 0.998 a 0.998,e 0.995  d 0.938 a 0.998,e 1.000)

  Exon  1   142024   142281 ( 258 n); score: 0.996
    Intron  1   142282   142423 ( 142 n);           Pd: 0.998  Pa: 0.998
  Exon  2   142424   142639 ( 216 n); score: 0.995
    Intron  2   142640   142710 (  71 n);           Pd: 0.938  Pa: 0.998
  Exon  3   142711   143175 ( 465 n); score: 1.000

  PGS (142024  142281,142424  142639,142711  143175)	3998+

3-phase translation of AGS-1 (+strand):

          .         .         .         .         .         .         
  142024  GTTTTGGCATAACGAAGCATCTTCTTCTTCTTCCTTGTATTTATTATCCATTTCCAGAGA
           V  L  A  *  R  S  I  F  F  F  F  L  V  F  I  I  H  F  Q  R 
            F  W  H  N  E  A  S  S  S  S  S  L  Y  L  L  S  I  S  R  D
             F  G  I  T  K  H  L  L  L  L  P  C  I  Y  Y  P  F  P  E  


          .         .         .         .         .         .         
  142084  TTCTCCCTTGTGAGATAACAACGAAGAACGAAAGAGAGAGAGAGAGAGAGAGATATGATG
           F  S  L  V  R  *  Q  R  R  T  K  E  R  E  R  E  R  D  M  M 
            S  P  L  *  D  N  N  E  E  R  K  R  E  R  E  R  E  I  *  W
          I  L  P  C  E  I  T  T  K  N  E  R  E  R  E  R  E  R  Y  D  


          .         .         .         .         .         .         
  142144  GACGGCGTTGAAGGCGGCACGGCGATGTACGGTGGTCTCGAGACGGTGCAATACGTACGG
           D  G  V  E  G  G  T  A  M  Y  G  G  L  E  T  V  Q  Y  V  R 
            T  A  L  K  A  A  R  R  C  T  V  V  S  R  R  C  N  T  Y  G
          G  R  R  *  R  R  H  G  D  V  R  W  S  R  D  G  A  I  R  T  


          .         .         .         .         .         .         
  142204  ACGCATCATCAACATCTGTGCAGAGAAAACCAGTGTACCTCTGCTCTTGTCAAACACATC
           T  H  H  Q  H  L  C  R  E  N  Q  C  T  S  A  L  V  K  H  I 
            R  I  I  N  I  C  A  E  K  T  S  V  P  L  L  L  S  N  T  S
          D  A  S  S  T  S  V  Q  R  K  P  V  Y  L  C  S  C  Q  T  H  


          .         .        :   .         .         .         .         
  142264  AAAGCTCCTCTTCATCTC : GTTTGGTCACTTGTACGGAGATTTGATCAGCCGCAGAAATAC
           K  A  P  L  H  L  :  V  W  S  L  V  R  R  F  D  Q  P  Q  K  Y 
            K  L  L  F  I  S :   F  G  H  L  Y  G  D  L  I  S  R  R  N  T
          Q  S  S  S  S  S   : R  L  V  T  C  T  E  I  *  S  A  A  E  I  


          .         .         .         .         .         .         
  142466  AAACCGTTTGTGAGCAGATGTACAGTAATCGGTGATCCTGAAATCGGCAGTCTTAGAGAA
           K  P  F  V  S  R  C  T  V  I  G  D  P  E  I  G  S  L  R  E 
            N  R  L  *  A  D  V  Q  *  S  V  I  L  K  S  A  V  L  E  K
          Q  T  V  C  E  Q  M  Y  S  N  R  *  S  *  N  R  Q  S  *  R  


          .         .         .         .         .         .         
  142526  GTCAATGTTAAATCTGGTCTTCCTGCAACAACATCTACTGAGAGATTAGAACTTCTTGAT
           V  N  V  K  S  G  L  P  A  T  T  S  T  E  R  L  E  L  L  D 
            S  M  L  N  L  V  F  L  Q  Q  H  L  L  R  D  *  N  F  L  M
          S  Q  C  *  I  W  S  S  C  N  N  I  Y  *  E  I  R  T  S  *  


          .         .         .         .         .         .    :       
  142586  GATGAAGAACACATCCTCGGTATCAAAATCATCGGTGGTGATCACAGACTTAAG : AATTAC
           D  E  E  H  I  L  G  I  K  I  I  G  G  D  H  R  L  K  :  N  Y 
            M  K  N  T  S  S  V  S  K  S  S  V  V  I  T  D  L  R :   I  T
          *  *  R  T  H  P  R  Y  Q  N  H  R  W  *  S  Q  T  *   : E  L  


          .         .         .         .         .         .         
  142717  TCGTCGATTTTGACGGTTCATCCGGAGATAATCGAGGGAAGAGCAGGAACGATGGTGATT
           S  S  I  L  T  V  H  P  E  I  I  E  G  R  A  G  T  M  V  I 
            R  R  F  *  R  F  I  R  R  *  S  R  E  E  Q  E  R  W  *  L
          L  V  D  F  D  G  S  S  G  D  N  R  G  K  S  R  N  D  G  D  


          .         .         .         .         .         .         
  142777  GAATCGTTTGTAGTTGATGTTCCTCAAGGTAACACAAAGGATGAGACTTGCTACTTTGTT
           E  S  F  V  V  D  V  P  Q  G  N  T  K  D  E  T  C  Y  F  V 
            N  R  L  *  L  M  F  L  K  V  T  Q  R  M  R  L  A  T  L  L
          *  I  V  C  S  *  C  S  S  R  *  H  K  G  *  D  L  L  L  C  


          .         .         .         .         .         .         
  142837  GAAGCACTTATCAGATGTAATCTCAAGTCACTAGCAGATGTTTCTGAAAGATTGGCTTCT
           E  A  L  I  R  C  N  L  K  S  L  A  D  V  S  E  R  L  A  S 
            K  H  L  S  D  V  I  S  S  H  *  Q  M  F  L  K  D  W  L  L
          *  S  T  Y  Q  M  *  S  Q  V  T  S  R  C  F  *  K  I  G  F  


          .         .         .         .         .         .         
  142897  CAGGACATTACTCAGTGAACTACATAATCAATGAACAAGGGCATTGAAGTGAAGTATCAA
           Q  D  I  T  Q  *  T  T  *  S  M  N  K  G  I  E  V  K  Y  Q 
            R  T  L  L  S  E  L  H  N  Q  *  T  R  A  L  K  *  S  I  N
          S  G  H  Y  S  V  N  Y  I  I  N  E  Q  G  H  *  S  E  V  S  


          .         .         .         .         .         .         
  142957  TTCCAGTTTGTGATATAATCAATATTCTTCAGGATTTTTTTGGTTTGGCCTAGATATATA
           F  Q  F  V  I  *  S  I  F  F  R  I  F  L  V  W  P  R  Y  I 
            S  S  L  *  Y  N  Q  Y  S  S  G  F  F  W  F  G  L  D  I  Y
          I  P  V  C  D  I  I  N  I  L  Q  D  F  F  G  L  A  *  I  Y  


          .         .         .         .         .         .         
  143017  TATAGATATCTATCCTCGGTAATGACCAGTCTAAAAAGATGTACATATTGTCCCAATGGT
           Y  R  Y  L  S  S  V  M  T  S  L  K  R  C  T  Y  C  P  N  G 
            I  D  I  Y  P  R  *  *  P  V  *  K  D  V  H  I  V  P  M  V
          I  *  I  S  I  L  G  N  D  Q  S  K  K  M  Y  I  L  S  Q  W  


          .         .         .         .         .         .         
  143077  GAAGTTTTGATGTAAGATATCTCCTGGTGGTTTGTTATTTGTAGATATTTTTGTAAACAA
           E  V  L  M  *  D  I  S  W  W  F  V  I  C  R  Y  F  C  K  Q 
            K  F  *  C  K  I  S  P  G  G  L  L  F  V  D  I  F  V  N  N
          *  S  F  D  V  R  Y  L  L  V  V  C  Y  L  *  I  F  L  *  T  


          .         .         .         .        
  143137  TGTAAATGTGAATGGTTTATGATGTATAATATATAGTTC
           C  K  C  E  W  F  M  M  Y  N  I  *  F 
            V  N  V  N  G  L  *  C  I  I  Y  S   
          M  *  M  *  M  V  Y  D  V  *  Y  I  V  


Maximal non-overlapping open reading frames (>= 64 codons)

>42592260+_PGL-13_AGS-1_PPS_1 (142102  142281,142424  142639,142711  142914)	(frame '0';   597 bp,  199 residues) 
       1  QRRTKERERE RDMMDGVEGG TAMYGGLETV QYVRTHHQHL CRENQCTSAL VKHIKAPLHL 
      61  VWSLVRRFDQ PQKYKPFVSR CTVIGDPEIG SLREVNVKSG LPATTSTERL ELLDDEEHIL 
     121  GIKIIGGDHR LKNYSSILTV HPEIIEGRAG TMVIESFVVD VPQGNTKDET CYFVEALIRC 
     181  NLKSLADVSE RLASQDITQ*




PGL  14 (+ strand):      143563     145650
AGS-1 (143563  143676,143764  143824,143934  143977,144064  144109,144193  144227,144315  144351,144447  144559,144927  145004,145132  145207,145345  145650)
SCR   (e 0.965  d 0.923 a 0.000,e 1.000  d 0.998 a 0.939,e 0.955  d 0.976 a 0.817,e 1.000  d 0.995 a 0.978,e 1.000  d 0.999 a 0.775,e 1.000  d 0.936 a 0.997,e 1.000  d 0.991 a 0.997,e 0.987  d 1.000 a 0.969,e 1.000  d 0.797 a 1.000,e 0.993)

  Exon  1   143563   143676 ( 114 n); score: 0.965
    Intron  1   143677   143763 (  87 n);           Pd: 0.923  Pa: 0.000
  Exon  2   143764   143824 (  61 n); score: 1.000
    Intron  2   143825   143933 ( 109 n);           Pd: 0.998  Pa: 0.939
  Exon  3   143934   143977 (  44 n); score: 0.955
    Intron  3   143978   144063 (  86 n);           Pd: 0.976  Pa: 0.817
  Exon  4   144064   144109 (  46 n); score: 1.000
    Intron  4   144110   144192 (  83 n);           Pd: 0.995  Pa: 0.978
  Exon  5   144193   144227 (  35 n); score: 1.000
    Intron  5   144228   144314 (  87 n);           Pd: 0.999  Pa: 0.775
  Exon  6   144315   144351 (  37 n); score: 1.000
    Intron  6   144352   144446 (  95 n);           Pd: 0.936  Pa: 0.997
  Exon  7   144447   144559 ( 113 n); score: 1.000
    Intron  7   144560   144926 ( 367 n);           Pd: 0.991  Pa: 0.997
  Exon  8   144927   145004 (  78 n); score: 0.987
    Intron  8   145005   145131 ( 127 n);           Pd: 1.000  Pa: 0.969
  Exon  9   145132   145207 (  76 n); score: 1.000
    Intron  9   145208   145344 ( 137 n);           Pd: 0.797  Pa: 1.000
  Exon 10   145345   145650 ( 306 n); score: 0.993

  PGS (143563  143676,143764  143824,143934  143977,144064  144109,144193  144227,144315  144351,144447  144559,144927  145004,145132  145207,145345  145650)	24379+

3-phase translation of AGS-1 (+strand):

          .         .         .         .         .         .         
  143563  CAAATTGTGAAGCAGATTCGATTTTAAAATCAAAATTTGAGTGTCGAGCGGGAAAGTAAA
           Q  I  V  K  Q  I  R  F  *  N  Q  N  L  S  V  E  R  E  S  K 
            K  L  *  S  R  F  D  F  K  I  K  I  *  V  S  S  G  K  V  K
             N  C  E  A  D  S  I  L  K  S  K  F  E  C  R  A  G  K  *  


          .         .         .         .         .         .    :       
  143623  AGTTCCGCTCCAATCTTCTAATCTTTTCGTATCTAGCGGGAAATTTCTCAGCAG : TAAAAA
           S  S  A  P  I  F  *  S  F  R  I  *  R  E  I  S  Q  Q  :  *  K 
            V  P  L  Q  S  S  N  L  F  V  S  S  G  K  F  L  S  S :   K  N
          K  F  R  S  N  L  L  I  F  S  Y  L  A  G  N  F  S  A   : V  K  


          .         .         .         .         .         .     :      
  143770  TCAATGGCGAGAACCAAGCATCGCGTTACCAGGTCACAACCTCGGAATCAAACTG : ATGCC
           S  M  A  R  T  K  H  R  V  T  R  S  Q  P  R  N  Q  T   : D  A 
            Q  W  R  E  P  S  I  A  L  P  G  H  N  L  G  I  K  L  :  M  P
          I  N  G  E  N  Q  A  S  R  Y  Q  V  T  T  S  E  S  N  * :   C  


          .         .         .         .         :  .         .         
  143939  GCCGGTGCTTCATCTTCTCAGGCGGCAGGTCCAACTACG : ACCCCGACAAGGAGAGGCGGT
           A  G  A  S  S  S  Q  A  A  G  P  T  T  :  T  P  T  R  R  G  G 
            P  V  L  H  L  L  R  R  Q  V  Q  L  R :   P  R  Q  G  E  A  V
          R  R  C  F  I  F  S  G  G  R  S  N  Y   : D  P  D  K  E  R  R  


          .         .         .     :      .         .         .          : 
  144085  GAAGGTGGAGATAATACTCAACAAA : CAAATCCTACAACTTCACCAGCTACTGGTACAAGG : 
           E  G  G  D  N  T  Q  Q   : T  N  P  T  T  S  P  A  T  G  T  R  : 
            K  V  E  I  I  L  N  K  :  Q  I  L  Q  L  H  Q  L  L  V  Q  G : 
          *  R  W  R  *  Y  S  T  N :   K  S  Y  N  F  T  S  Y  W  Y  K   : 


          .         .         .         .       :    .         .         
  144315  AGAGGGGCTAAGAGATCCAGACAGGCTATGCCACGAG : GCTCACAGAAGAAGTCTTATCGA
           R  G  A  K  R  S  R  Q  A  M  P  R   : G  S  Q  K  K  S  Y  R 
            E  G  L  R  D  P  D  R  L  C  H  E  :  A  H  R  R  S  L  I  D
          E  R  G  *  E  I  Q  T  G  Y  A  T  R :   L  T  E  E  V  L  S  


          .         .         .         .         .         .         
  144470  TACAGGCCAGGAACCGTTGCTCTAAAAGAGATTCGCCATTTCCAGAAGCAGACAAACCTT
           Y  R  P  G  T  V  A  L  K  E  I  R  H  F  Q  K  Q  T  N  L 
            T  G  Q  E  P  L  L  *  K  R  F  A  I  S  R  S  R  Q  T  F
          I  Q  A  R  N  R  C  S  K  R  D  S  P  F  P  E  A  D  K  P  


          .         .         .          : .         .         .         
  144530  CTTATTCCGGCTGCCAGTTTCATAAGAGAA : GTGAGAAGTATAACCCATATGTTGGCCCCT
           L  I  P  A  A  S  F  I  R  E  :  V  R  S  I  T  H  M  L  A  P 
            L  F  R  L  P  V  S  *  E  K :   *  E  V  *  P  I  C  W  P  L
          S  Y  S  G  C  Q  F  H  K  R   : S  E  K  Y  N  P  Y  V  G  P  


          .         .         .         .         .        :   .         
  144957  CCCCAAATCAATCGTTGGACAGCTGAAGCTCTTGTTGCTCTTCAAGAG : GCGGCAGAAGAT
           P  Q  I  N  R  W  T  A  E  A  L  V  A  L  Q  E  :  A  A  E  D 
            P  K  S  I  V  G  Q  L  K  L  L  L  L  F  K  R :   R  Q  K  I
          S  P  N  Q  S  L  D  S  *  S  S  C  C  S  S  R   : G  G  R  R  


          .         .         .         .         .         .         
  145144  TACTTGGTTGGTTTGTTCTCAGATTCAATGCTCTGTGCTATCCATGCAAGACGTGTTACT
           Y  L  V  G  L  F  S  D  S  M  L  C  A  I  H  A  R  R  V  T 
            T  W  L  V  C  S  Q  I  Q  C  S  V  L  S  M  Q  D  V  L  L
          L  L  G  W  F  V  L  R  F  N  A  L  C  Y  P  C  K  T  C  Y  


          .    :       .         .         .         .         .         
  145204  CTAA : TGAGAAAAGACTTTGAACTTGCACGCCGGCTTGGAGGAAAAGGCAGACCATGGTGA
           L   : M  R  K  D  F  E  L  A  R  R  L  G  G  K  G  R  P  W  * 
            *  :  *  E  K  T  L  N  L  H  A  G  L  E  E  K  A  D  H  G  D
          S  N :   E  K  R  L  *  T  C  T  P  A  W  R  K  R  Q  T  M  V  


          .         .         .         .         .         .         
  145401  TAGAAAACTCACTCACTATTCACATCTCTTACATTGTAAGTGAGGATCGAATAGTTAACA
           *  K  T  H  S  L  F  T  S  L  T  L  *  V  R  I  E  *  L  T 
            R  K  L  T  H  Y  S  H  L  L  H  C  K  *  G  S  N  S  *  Q
          I  E  N  S  L  T  I  H  I  S  Y  I  V  S  E  D  R  I  V  N  


          .         .         .         .         .         .         
  145461  ACAAGTGTGTCGTAGGTTGTATAAGGTTATTCTCTCCTTGTCTCTTGGTGATGCATGTCC
           T  S  V  S  *  V  V  *  G  Y  S  L  L  V  S  W  *  C  M  S 
            Q  V  C  R  R  L  Y  K  V  I  L  S  L  S  L  G  D  A  C  P
          N  K  C  V  V  G  C  I  R  L  F  S  P  C  L  L  V  M  H  V  


          .         .         .         .         .         .         
  145521  TTTTATTTTACTAAATGATCTGACCAAAACCTTCTTTTGAAACATAACTGGAAACCCGAA
           F  Y  F  T  K  *  S  D  Q  N  L  L  L  K  H  N  W  K  P  E 
            F  I  L  L  N  D  L  T  K  T  F  F  *  N  I  T  G  N  P  N
          L  L  F  Y  *  M  I  *  P  K  P  S  F  E  T  *  L  E  T  R  


          .         .         .         .         .         .         
  145581  TTTGGTTTGATTCCAATATCTAGGCTGTAAAACTTCTTTCTCTATGTGTGTTTCTATCTG
           F  G  L  I  P  I  S  R  L  *  N  F  F  L  Y  V  C  F  Y  L 
            L  V  *  F  Q  Y  L  G  C  K  T  S  F  S  M  C  V  S  I  C
          I  W  F  D  S  N  I  *  A  V  K  L  L  S  L  C  V  F  L  S  


          .         
  145641  CTTTTCGTTG
           L  F  V  
            F  S  L 
          A  F  R   


Maximal non-overlapping open reading frames (>= 64 codons)

>42592260+_PGL-14_AGS-1_PPS_1 (143767  143824,143934  143977,144064  144109,144193  144227,144315  144351,144447  144559,144927  145004,145132  145207,145345  145400)	(frame '0';   540 bp,  180 residues) 
       1  KSMARTKHRV TRSQPRNQTD AAGASSSQAA GPTTTPTRRG GEGGDNTQQT NPTTSPATGT 
      61  RRGAKRSRQA MPRGSQKKSY RYRPGTVALK EIRHFQKQTN LLIPAASFIR EVRSITHMLA 
     121  PPQINRWTAE ALVALQEAAE DYLVGLFSDS MLCAIHARRV TLMRKDFELA RRLGGKGRPW 
     181  *




PGL  15 (+ strand):      185133     186730
AGS-1 (185133  186009,186340  186730)
SCR   (e 0.993  d 0.998 a 1.000,e 0.997)

  Exon  1   185133   186009 ( 877 n); score: 0.993
    Intron  1   186010   186339 ( 330 n);           Pd: 0.998  Pa: 1.000
  Exon  2   186340   186730 ( 391 n); score: 0.997

  PGS (185133  186009,186340  186730)	6115+

3-phase translation of AGS-1 (+strand):

          .         .         .         .         .         .         
  185133  AAACAAACAAAAAAGTTCCTGTTCGATTCCTCCTCTCATTCATTCTCTGCTTGTTCCTCA
           K  Q  T  K  K  F  L  F  D  S  S  S  H  S  F  S  A  C  S  S 
            N  K  Q  K  S  S  C  S  I  P  P  L  I  H  S  L  L  V  P  Q
             T  N  K  K  V  P  V  R  F  L  L  S  F  I  L  C  L  F  L  


          .         .         .         .         .         .         
  185193  AATCCTTCAATTTTCTCATCAAATCCAGATTTGCGAATTTAGGTTTTCTTGAATCTAATC
           N  P  S  I  F  S  S  N  P  D  L  R  I  *  V  F  L  N  L  I 
            I  L  Q  F  S  H  Q  I  Q  I  C  E  F  R  F  S  *  I  *  S
          K  S  F  N  F  L  I  K  S  R  F  A  N  L  G  F  L  E  S  N  


          .         .         .         .         .         .         
  185253  GTTCTCGATGATTTCGAAAGATCACCTTCATCATCTGGATCCTCTGGGTACAACCAAATC
           V  L  D  D  F  E  R  S  P  S  S  S  G  S  S  G  Y  N  Q  I 
            F  S  M  I  S  K  D  H  L  H  H  L  D  P  L  G  T  T  K  S
          R  S  R  *  F  R  K  I  T  F  I  I  W  I  L  W  V  Q  P  N  


          .         .         .         .         .         .         
  185313  GTACCACATGAATACCTCCACCGTATCGCCGCCGTCTCCGGCATCATCAATTTCGTTGTC
           V  P  H  E  Y  L  H  R  I  A  A  V  S  G  I  I  N  F  V  V 
            Y  H  M  N  T  S  T  V  S  P  P  S  P  A  S  S  I  S  L  S
          R  T  T  *  I  P  P  P  Y  R  R  R  L  R  H  H  Q  F  R  C  


          .         .         .         .         .         .         
  185373  GCAATCGGCGTGGCTGGAGGTTCGTTTGTTCTACGTCCGTATCGCTCCTTGCGTCGTTGA
           A  I  G  V  A  G  G  S  F  V  L  R  P  Y  R  S  L  R  R  * 
            Q  S  A  W  L  E  V  R  L  F  Y  V  R  I  A  P  C  V  V  E
          R  N  R  R  G  W  R  F  V  C  S  T  S  V  S  L  L  A  S  L  


          .         .         .         .         .         .         
  185433  GAACGTCCCTGACTTCCTCACCCTCCGTCACCCTCGTCGCGAAACCGGTGCTTCTCTTGA
           E  R  P  *  L  P  H  P  P  S  P  S  S  R  N  R  C  F  S  * 
            N  V  P  D  F  L  T  L  R  H  P  R  R  E  T  G  A  S  L  E
          R  T  S  L  T  S  S  P  S  V  T  L  V  A  K  P  V  L  L  L  


          .         .         .         .         .         .         
  185493  GGTTAACGGCGTTCGCGTTCCTTCGTCGCAGACGGCGTCGCTTAAACTCCGCCGTGACAG
           G  *  R  R  S  R  S  F  V  A  D  G  V  A  *  T  P  P  *  Q 
            V  N  G  V  R  V  P  S  S  Q  T  A  S  L  K  L  R  R  D  R
          R  L  T  A  F  A  F  L  R  R  R  R  R  R  L  N  S  A  V  T  


          .         .         .         .         .         .         
  185553  AGTCGACCGGGAATCGTCGGAGGTGACTTACGTGAGCACTGAGACCGTTCGCGTTACCGG
           S  R  P  G  I  V  G  G  D  L  R  E  H  *  D  R  S  R  Y  R 
            V  D  R  E  S  S  E  V  T  Y  V  S  T  E  T  V  R  V  T  G
          E  S  T  G  N  R  R  R  *  L  T  *  A  L  R  P  F  A  L  P  


          .         .         .         .         .         .         
  185613  ATGCGTTGATTTCGAGGTTTATGATAACGAGGATATGGTCTTGTGTGGGAACCTAGATAG
           M  R  *  F  R  G  L  *  *  R  G  Y  G  L  V  W  E  P  R  * 
            C  V  D  F  E  V  Y  D  N  E  D  M  V  L  C  G  N  L  D  R
          D  A  L  I  S  R  F  M  I  T  R  I  W  S  C  V  G  T  *  I  


          .         .         .         .         .         .         
  185673  AATCGAAGGTGCTTGGAACAATGGAACTGTGAGTGATCCCAAGACTGGATGGGGCATGGA
           N  R  R  C  L  E  Q  W  N  C  E  *  S  Q  D  W  M  G  H  G 
            I  E  G  A  W  N  N  G  T  V  S  D  P  K  T  G  W  G  M  D
          E  S  K  V  L  G  T  M  E  L  *  V  I  P  R  L  D  G  A  W  


          .         .         .         .         .         .         
  185733  TTGTTACATTGCTATGGGAAACGGACACGTGTCAGGTCCTTCTGCCTCTGTGTTTTTCCA
           L  L  H  C  Y  G  K  R  T  R  V  R  S  F  C  L  C  V  F  P 
            C  Y  I  A  M  G  N  G  H  V  S  G  P  S  A  S  V  F  F  Q
          I  V  T  L  L  W  E  T  D  T  C  Q  V  L  L  P  L  C  F  S  


          .         .         .         .         .         .         
  185793  GCCAAAGTTTGGAGTCTCGTCTCCGTCCGTCGAGGTTTATATAGCTGGTTGTTGTGGTGG
           A  K  V  W  S  L  V  S  V  R  R  G  L  Y  S  W  L  L  W  W 
            P  K  F  G  V  S  S  P  S  V  E  V  Y  I  A  G  C  C  G  G
          S  Q  S  L  E  S  R  L  R  P  S  R  F  I  *  L  V  V  V  V  


          .         .         .         .         .         .         
  185853  TGTCCCGGTGATATTGACCAAGACGATTCAGGCGAGTCCGAGGAGGAAGGTGGCTAGGCA
           C  P  G  D  I  D  Q  D  D  S  G  E  S  E  E  E  G  G  *  A 
            V  P  V  I  L  T  K  T  I  Q  A  S  P  R  R  K  V  A  R  H
          V  S  R  *  Y  *  P  R  R  F  R  R  V  R  G  G  R  W  L  G  


          .         .         .         .         .         .         
  185913  CGTGACACTCGACGCTATCCCTGAGGATGAGGAAGTTGGCAAAGAGCAAGACATTGGTAC
           R  D  T  R  R  Y  P  *  G  *  G  S  W  Q  R  A  R  H  W  Y 
            V  T  L  D  A  I  P  E  D  E  E  V  G  K  E  Q  D  I  G  T
          T  *  H  S  T  L  S  L  R  M  R  K  L  A  K  S  K  T  L  V  


          .         .         .         .       :    .         .         
  185973  CATTGGTGATGAATTGGCCCGTCAAAGCAAAGTACAG : ATGATGGAATCAGAAGTTGATGA
           H  W  *  *  I  G  P  S  K  Q  S  T   : D  D  G  I  R  S  *  * 
            I  G  D  E  L  A  R  Q  S  K  V  Q  :  M  M  E  S  E  V  D  E
          P  L  V  M  N  W  P  V  K  A  K  Y  R :   *  W  N  Q  K  L  M  


          .         .         .         .         .         .         
  186363  ATACGATGACTCAGATATGAAAATGGCACAGAGATATTACCCTGAAGGAATGTACGTTGA
           I  R  *  L  R  Y  E  N  G  T  E  I  L  P  *  R  N  V  R  * 
            Y  D  D  S  D  M  K  M  A  Q  R  Y  Y  P  E  G  M  Y  V  D
          N  T  M  T  Q  I  *  K  W  H  R  D  I  T  L  K  E  C  T  L  


          .         .         .         .         .         .         
  186423  TGAGGATGGTCAGCTCTCATGGTTCAATGCAGGAGTCAGAGTCGGAGTTGGGATAGGCCT
           *  G  W  S  A  L  M  V  Q  C  R  S  Q  S  R  S  W  D  R  P 
            E  D  G  Q  L  S  W  F  N  A  G  V  R  V  G  V  G  I  G  L
          M  R  M  V  S  S  H  G  S  M  Q  E  S  E  S  E  L  G  *  A  


          .         .         .         .         .         .         
  186483  TGGGATGTGTCTTGGTGTAGGCATTGGAGTTGGATTACTCATGCGTTCGTATCAAGCAAC
           W  D  V  S  W  C  R  H  W  S  W  I  T  H  A  F  V  S  S  N 
            G  M  C  L  G  V  G  I  G  V  G  L  L  M  R  S  Y  Q  A  T
          L  G  C  V  L  V  *  A  L  E  L  D  Y  S  C  V  R  I  K  Q  


          .         .         .         .         .         .         
  186543  AACTAGTAACCTTCGTAGGAGGTTTCTCTGATCATCACCTACCATAAACTAAAAACCCAC
           N  *  *  P  S  *  E  V  S  L  I  I  T  Y  H  K  L  K  T  H 
            T  S  N  L  R  R  R  F  L  *  S  S  P  T  I  N  *  K  P  T
          Q  L  V  T  F  V  G  G  F  S  D  H  H  L  P  *  T  K  N  P  


          .         .         .         .         .         .         
  186603  TTAGACATTTCGAGATCTACTAAGAATGTCGGTAACGTAGTGGGTTATAAAAGAGATAGA
           L  D  I  S  R  S  T  K  N  V  G  N  V  V  G  Y  K  R  D  R 
            *  T  F  R  D  L  L  R  M  S  V  T  *  W  V  I  K  E  I  E
          L  R  H  F  E  I  Y  *  E  C  R  *  R  S  G  L  *  K  R  *  


          .         .         .         .         .         .         
  186663  ATTTTGGTAGATAGATGTATAGAGCTTTTGGTTTTCACCTGTTTGTGTCCTTTTGAATAT
           I  L  V  D  R  C  I  E  L  L  V  F  T  C  L  C  P  F  E  Y 
            F  W  *  I  D  V  *  S  F  W  F  S  P  V  C  V  L  L  N  I
          N  F  G  R  *  M  Y  R  A  F  G  F  H  L  F  V  S  F  *  I  


          .       
  186723  ATATATAT
           I  Y   
            Y  I  
          Y  I  Y 


Maximal non-overlapping open reading frames (>= 64 codons)

>42592260+_PGL-15_AGS-1_PPS_1 (185251  186009,186340  186573)	(frame '1';   990 bp,  330 residues) 
       1  SFSMISKDHL HHLDPLGTTK SYHMNTSTVS PPSPASSISL SQSAWLEVRL FYVRIAPCVV 
      61  ENVPDFLTLR HPRRETGASL EVNGVRVPSS QTASLKLRRD RVDRESSEVT YVSTETVRVT 
     121  GCVDFEVYDN EDMVLCGNLD RIEGAWNNGT VSDPKTGWGM DCYIAMGNGH VSGPSASVFF 
     181  QPKFGVSSPS VEVYIAGCCG GVPVILTKTI QASPRRKVAR HVTLDAIPED EEVGKEQDIG 
     241  TIGDELARQS KVQMMESEVD EYDDSDMKMA QRYYPEGMYV DEDGQLSWFN AGVRVGVGIG 
     301  LGMCLGVGIG VGLLMRSYQA TTSNLRRRFL *




$ general statistics:
$ 15 chains have been computed
$ 
$ memory statistics:
$ 15 spliced alignments have been stored
$ 15 predicted gene locations have been stored
$ 0 megabytes was the average size of the backtrace matrix
$ 15 backtrace matrices have been allocated
$ 
$ date finished: 2008-11-18 11:32:16
