SPArse Matrix

Documentation for package ‘spam’ version 0.41-0

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A B C D E F G H I K L M N O P R S T U V misc

-- A --

abs	Mathematical functions
acos	Mathematical functions
acosh	Mathematical functions
adjacency	Administrative districts of Germany
adjacency.landkreis	Administrative districts of Germany
adjacency.spam	Administrative districts of Germany
all	Rounding of Numbers
all.equal-method	Test if Two 'spam' Objects are (Nearly) Equal
all.equal.spam	Test if Two 'spam' Objects are (Nearly) Equal
any	Rounding of Numbers
apply.spam	Apply Functions Over Sparse Matrix Margins
Arith-method	Class "spam"
as.dgCMatrix.spam	Transformation to other sparse formats
as.dgRMatrix.spam	Transformation to other sparse formats
as.matrix-method	Class "spam"
as.matrix-method	Class "spam.chol.NgPeyton"
as.matrix.csr.spam	Transformation to other sparse formats
as.matrix.spam	Class "spam"
as.spam	Sparse Matrix Class
as.spam-method	Class "spam.chol.NgPeyton"
as.spam-method	Sparse Matrix Class
as.spam.chol.NgPeyton	Sparse Matrix Class
as.spam.dgCMatrix	Transformation to other sparse formats
as.spam.dgRMatrix	Transformation to other sparse formats
as.spam.dist	Sparse Matrix Class
as.spam.list	Sparse Matrix Class
as.spam.matrix	Sparse Matrix Class
as.spam.matrix.csr	Transformation to other sparse formats
as.spam.numeric	Sparse Matrix Class
as.spam.spam	Sparse Matrix Class
asin	Mathematical functions
asinh	Mathematical functions
assign.spam	Basic Linear Algebra for Sparse Matrices
atan	Mathematical functions
atanh	Mathematical functions

-- B --

backsolve	Linear Equation Solving for Sparse Matrices
backsolve-method	Linear Equation Solving for Sparse Matrices
backsolve-method	Class "spam.chol.NgPeyton"
backsolve-methods	Linear Equation Solving for Sparse Matrices
backsolve.spam	Linear Equation Solving for Sparse Matrices
bandwidth	Bandwidth of a Sparse Matrix
bdiag	Binds Arrays Corner-to-Corner
bdiag.spam	Binds Arrays Corner-to-Corner

-- C --

c-method	Class "spam"
c-method	Class "spam.chol.NgPeyton"
cbind	Combine spam Matrices by Rows or Columns
cbind-method	Combine spam Matrices by Rows or Columns
cbind.spam	Combine spam Matrices by Rows or Columns
ceiling	Mathematical functions
chol-method	Cholesky Factorization for Sparse Matrices
chol-method	Class "spam.chol.NgPeyton"
chol.spam	Cholesky Factorization for Sparse Matrices
chol2inv	Linear Equation Solving for Sparse Matrices
chol2inv-method	Linear Equation Solving for Sparse Matrices
chol2inv.spam	Linear Equation Solving for Sparse Matrices
circulant.spam	Create Circulant Matrices
cleanup	Cleaning up sparse matrices
colMeans	Form Row and Column Sums and Means
colMeans-method	Form Row and Column Sums and Means
colMeans.spam	Form Row and Column Sums and Means
colSums	Form Row and Column Sums and Means
colSums-method	Form Row and Column Sums and Means
colSums.spam	Form Row and Column Sums and Means
Compare-method	Class "spam"
complexities	Complexity for Sparse Matrices
complexity	Complexity for Sparse Matrices
cos	Mathematical functions
cov.exp	Covariance functions
cov.mat	Covariance functions
cov.nug	Covariance functions
cov.sph	Covariance functions
cov.wend1	Covariance functions
cov.wend2	Covariance functions
cov.wu1	Covariance functions
cov.wu2	Covariance functions
cov.wu3	Covariance functions
covmat	Covariance functions
cumprod	Mathematical functions
cumsum	Mathematical functions

-- D --

det	Calculate the determinant of a positive definite Sparse Matrix
det-method	Calculate the determinant of a positive definite Sparse Matrix
det.spam	Calculate the determinant of a positive definite Sparse Matrix
determinant	Calculate the determinant of a positive definite Sparse Matrix
determinant-method	Calculate the determinant of a positive definite Sparse Matrix
determinant-method	Class "spam.chol.NgPeyton"
determinant.spam	Calculate the determinant of a positive definite Sparse Matrix
determinant.spam.chol	Calculate the determinant of a positive definite Sparse Matrix
determinant.spam.chol.NgPeyton	Calculate the determinant of a positive definite Sparse Matrix
diag	Sparse Matrix diagonals
diag-method	Sparse Matrix diagonals
diag-method	Class "spam.chol.NgPeyton"
diag.assign-method	Sparse Matrix diagonals
diag.of.spam	Sparse Matrix diagonals
diag.spam	Sparse Matrix diagonals
diag.spam<-	Sparse Matrix diagonals
diag<-	Sparse Matrix diagonals
diag<--method	Sparse Matrix diagonals
diag<-.spam	Sparse Matrix diagonals
dim-method	Basic Linear Algebra for Sparse Matrices
dim-method	Class "spam.chol.NgPeyton"
dim<--method	Dimensions of an Object
dim<--method	Class "spam.chol.NgPeyton"
dim<-.spam	Dimensions of an Object
display	Graphially Represent the Nonzero Entries
display-method	Graphially Represent the Nonzero Entries
display-method	Class "spam.chol.NgPeyton"
display.spam	Graphially Represent the Nonzero Entries
dist.spam	Distance Matrix Computation
distance	Distance Matrix Computation

-- E --

exp	Mathematical functions

-- F --

floor	Mathematical functions
foreign	Transformation to other sparse formats
forwardsolve	Linear Equation Solving for Sparse Matrices
forwardsolve-method	Linear Equation Solving for Sparse Matrices
forwardsolve-method	Class "spam.chol.NgPeyton"
forwardsolve-methods	Linear Equation Solving for Sparse Matrices
forwardsolve.spam	Linear Equation Solving for Sparse Matrices

-- G --

gamma	Mathematical functions
germany	Meta-data about administrative districts of Germany
germany.data	Meta-data about administrative districts of Germany
germany.graph	Administrative districts of Germany
germany.info	Meta-data about administrative districts of Germany
germany.plot	Plot administrative districts of Germany
germany.poly	Meta-data about administrative districts of Germany
germany.spam	Meta-data about administrative districts of Germany
grid_trace2	Two trace plots and a scatter plot.
grid_zoom	grid_zoom

-- H --

head	Return the First or Last Part of an Object
head-method	Return the First or Last Part of an Object
head.spam	Return the First or Last Part of an Object

-- I --

image	Display a spam Object as Color Image
image-method	Display a spam Object as Color Image
image-method	Class "spam.chol.NgPeyton"
image.spam	Display a spam Object as Color Image
import	Read External Matrix Formats
initialize-method	Sparse Matrix Class
is.spam	Sparse Matrix Class
isSymmetric-method	Test if a spam matrix is Symmetric
isSymmetric.spam	Test if a spam matrix is Symmetric

-- K --

kronecker-method	Class "spam"
kronecker.default	Kronecker Products on Sparse Matrices
kronecker.spam	Kronecker Products on Sparse Matrices

-- L --

length-method	Class "spam"
length-method	Class "spam.chol.NgPeyton"
length<--method	Class "spam"
length<--method	Class "spam.chol.NgPeyton"
lgamma	Mathematical functions
log	Mathematical functions
log10	Mathematical functions
lower.tri	Lower and Upper Triangular Part of a Sparse Matrix
lower.tri-method	Class "spam"
lower.tri.spam	Lower and Upper Triangular Part of a Sparse Matrix

-- M --

map.landkreis	Administrative districts of Germany
Math	Mathematical functions
Math-method	Mathematical functions
Math2	Rounding of Numbers
Math2-method	Rounding of Numbers
max	Rounding of Numbers
min	Rounding of Numbers
mle	Maximum likelihood estimates
mle.nomean	Maximum likelihood estimates
mle.nomean.spam	Maximum likelihood estimates
mle.spam	Maximum likelihood estimates

-- N --

ncol-method	Basic Linear Algebra for Sparse Matrices
nearest.dist	Distance Matrix Computation
neg2loglikelihood	Maximum likelihood estimates
neg2loglikelihood.spam	Maximum likelihood estimates
norm	Basic Linear Algebra for Sparse Matrices
norm-method	Basic Linear Algebra for Sparse Matrices
norm.spam	Basic Linear Algebra for Sparse Matrices
nrow-method	Basic Linear Algebra for Sparse Matrices

-- O --

Ops.spam	Basic Linear Algebra for Sparse Matrices
Oral	Oral Cavity Cancer
Oral.spam	Oral Cavity Cancer
oral.spam	Oral Cavity Cancer
ordering	Extract the permutation
ordering-method	Extract the permutation
ordering-method	Class "spam.chol.NgPeyton"
ordering-methods	Extract the permutation
ordering.spam.chol	Extract the permutation
ordering.spam.chol.NgPeyton	Extract the permutation
overview	SPArse Matrix Package

-- P --

permutation	Permute a matrix
permutation-method	Permute a matrix
permutation.spam	Permute a matrix
plot-method	Class "spam"
plot.spam	Basic Linear Algebra for Sparse Matrices
powerboost	Specific options Setting
precmat	IGMRF Precision Matrices
precmat.GMRFreglat	Create Precision Matrices
precmat.IGMRFirreglat	IGMRF Precision Matrices
precmat.IGMRFreglat	IGMRF Precision Matrices
precmat.RW1	IGMRF Precision Matrices
precmat.RW2	IGMRF Precision Matrices
precmat.RWn	IGMRF Precision Matrices
precmat.season	IGMRF Precision Matrices
print	Printing and summarizing sparse matrices
print-method	Printing and summarizing sparse matrices
print-method	Class "spam.chol.NgPeyton"
print.spam	Printing and summarizing sparse matrices
print.spam.chol	Printing and summarizing sparse matrices
print.spam.chol.NgPeyton	Printing and summarizing sparse matrices
prod	Rounding of Numbers

-- R --

range	Rounding of Numbers
rbind	Combine spam Matrices by Rows or Columns
rbind-method	Combine spam Matrices by Rows or Columns
rbind.spam	Combine spam Matrices by Rows or Columns
read.HB	Read External Matrix Formats
read.MM	Read External Matrix Formats
rmvnorm.canonical	Draw Multivariate Normals
rmvnorm.canonical.const	Draw Constrainted Multivariate Normals
rmvnorm.const	Draw Constrainted Multivariate Normals
rmvnorm.prec	Draw Multivariate Normals
rmvnorm.prec.const	Draw Constrainted Multivariate Normals
rmvnorm.spam	Draw Multivariate Normals
round	Rounding of Numbers
rowMeans	Form Row and Column Sums and Means
rowMeans-method	Form Row and Column Sums and Means
rowMeans.spam	Form Row and Column Sums and Means
rowSums	Form Row and Column Sums and Means
rowSums-method	Form Row and Column Sums and Means
rowSums.spam	Form Row and Column Sums and Means

-- S --

show-method	Class "spam"
show-method	Class "spam.chol.NgPeyton"
signif	Rounding of Numbers
sin	Mathematical functions
solve-method	Linear Equation Solving for Sparse Matrices
solve.spam	Linear Equation Solving for Sparse Matrices
SPAM	SPArse Matrix Package
Spam	SPArse Matrix Package
spam	Sparse Matrix Class
spam-class	Class "spam"
spam-method	Sparse Matrix Class
spam.chol.NgPeyton-class	Class "spam.chol.NgPeyton"
spam.class	Class "spam"
spam.creation	Sparse Matrix Class
spam.getOption	Options Settings
spam.list	Sparse Matrix Class
spam.numeric	Sparse Matrix Class
spam.ops	Basic Linear Algebra for Sparse Matrices
spam.options	Options Settings
spam.Version	Spam Version Information
spam.version	Spam Version Information
sqrt	Mathematical functions
subset.rows.spam	Basic Linear Algebra for Sparse Matrices
subset.spam	Basic Linear Algebra for Sparse Matrices
sum	Rounding of Numbers
Summary	Rounding of Numbers
summary	Printing and summarizing sparse matrices
Summary-method	Rounding of Numbers
summary-method	Printing and summarizing sparse matrices
summary-method	Class "spam.chol.NgPeyton"
Summary.spam	Rounding of Numbers
summary.spam	Printing and summarizing sparse matrices
summary.spam.chol	Printing and summarizing sparse matrices
summary.spam.chol.NgPeyton	Printing and summarizing sparse matrices

-- T --

t-method	Class "spam"
t-method	Class "spam.chol.NgPeyton"
t.spam	Basic Linear Algebra for Sparse Matrices
tail	Return the First or Last Part of an Object
tail-method	Return the First or Last Part of an Object
tail.spam	Return the First or Last Part of an Object
tan	Mathematical functions
toeplitz.spam	Create Toeplitz Matrices
triplet	Transform a spam format to triplets
trunc	Mathematical functions

-- U --

update	Cholesky Factorization for Sparse Matrices
update-method	Cholesky Factorization for Sparse Matrices
update.spam.chol.NgPeyton	Cholesky Factorization for Sparse Matrices
upper.tri	Lower and Upper Triangular Part of a Sparse Matrix
upper.tri-method	Class "spam"
upper.tri.spam	Lower and Upper Triangular Part of a Sparse Matrix
UScounties	Adjacency structure of the counties in the contiguous United States
UScounties.ndorder	Adjacency structure of the counties in the contiguous United States
UScounties.storder	Adjacency structure of the counties in the contiguous United States
USprecip	Monthly total precipitation (mm) for April 1948 in the contiguous United States

-- V --

validspamobject	Sparse Matrix Class
version	Spam Version Information

-- misc --

!=-method	Basic Linear Algebra for Sparse Matrices
%%-method	Basic Linear Algebra for Sparse Matrices
%*%-method	Basic Linear Algebra for Sparse Matrices
%*%-methods	Basic Linear Algebra for Sparse Matrices
%/%-method	Basic Linear Algebra for Sparse Matrices
%d*%	Basic Linear Algebra for Sparse Matrices
%d*%-method	Basic Linear Algebra for Sparse Matrices
%d+%	Basic Linear Algebra for Sparse Matrices
%d+%-method	Basic Linear Algebra for Sparse Matrices
&-method	Basic Linear Algebra for Sparse Matrices
*-method	Basic Linear Algebra for Sparse Matrices
+-method	Basic Linear Algebra for Sparse Matrices
--method	Basic Linear Algebra for Sparse Matrices
.Spam	Options Settings
/-method	Basic Linear Algebra for Sparse Matrices
<-method	Basic Linear Algebra for Sparse Matrices
<=-method	Basic Linear Algebra for Sparse Matrices
==-method	Basic Linear Algebra for Sparse Matrices
>-method	Basic Linear Algebra for Sparse Matrices
>=-method	Basic Linear Algebra for Sparse Matrices
[-method	Class "spam"
[.spam	Basic Linear Algebra for Sparse Matrices
[<--method	Basic Linear Algebra for Sparse Matrices
[<--method	Class "spam"
[<-.spam	Basic Linear Algebra for Sparse Matrices
^-method	Basic Linear Algebra for Sparse Matrices
\|-method	Basic Linear Algebra for Sparse Matrices