SPArse Matrix


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Documentation for package ‘spam’ version 0.41-0

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A B C D E F G H I K L M N O P R S T U V misc

-- A --

abs Mathematical functions
acos Mathematical functions
acosh Mathematical functions
adjacency Administrative districts of Germany
adjacency.landkreis Administrative districts of Germany
adjacency.spam Administrative districts of Germany
all Rounding of Numbers
all.equal-method Test if Two 'spam' Objects are (Nearly) Equal
all.equal.spam Test if Two 'spam' Objects are (Nearly) Equal
any Rounding of Numbers
apply.spam Apply Functions Over Sparse Matrix Margins
Arith-method Class "spam"
as.dgCMatrix.spam Transformation to other sparse formats
as.dgRMatrix.spam Transformation to other sparse formats
as.matrix-method Class "spam"
as.matrix-method Class "spam.chol.NgPeyton"
as.matrix.csr.spam Transformation to other sparse formats
as.matrix.spam Class "spam"
as.spam Sparse Matrix Class
as.spam-method Class "spam.chol.NgPeyton"
as.spam-method Sparse Matrix Class
as.spam.chol.NgPeyton Sparse Matrix Class
as.spam.dgCMatrix Transformation to other sparse formats
as.spam.dgRMatrix Transformation to other sparse formats
as.spam.dist Sparse Matrix Class
as.spam.list Sparse Matrix Class
as.spam.matrix Sparse Matrix Class
as.spam.matrix.csr Transformation to other sparse formats
as.spam.numeric Sparse Matrix Class
as.spam.spam Sparse Matrix Class
asin Mathematical functions
asinh Mathematical functions
assign.spam Basic Linear Algebra for Sparse Matrices
atan Mathematical functions
atanh Mathematical functions

-- B --

backsolve Linear Equation Solving for Sparse Matrices
backsolve-method Linear Equation Solving for Sparse Matrices
backsolve-method Class "spam.chol.NgPeyton"
backsolve-methods Linear Equation Solving for Sparse Matrices
backsolve.spam Linear Equation Solving for Sparse Matrices
bandwidth Bandwidth of a Sparse Matrix
bdiag Binds Arrays Corner-to-Corner
bdiag.spam Binds Arrays Corner-to-Corner

-- C --

c-method Class "spam"
c-method Class "spam.chol.NgPeyton"
cbind Combine spam Matrices by Rows or Columns
cbind-method Combine spam Matrices by Rows or Columns
cbind.spam Combine spam Matrices by Rows or Columns
ceiling Mathematical functions
chol-method Cholesky Factorization for Sparse Matrices
chol-method Class "spam.chol.NgPeyton"
chol.spam Cholesky Factorization for Sparse Matrices
chol2inv Linear Equation Solving for Sparse Matrices
chol2inv-method Linear Equation Solving for Sparse Matrices
chol2inv.spam Linear Equation Solving for Sparse Matrices
circulant.spam Create Circulant Matrices
cleanup Cleaning up sparse matrices
colMeans Form Row and Column Sums and Means
colMeans-method Form Row and Column Sums and Means
colMeans.spam Form Row and Column Sums and Means
colSums Form Row and Column Sums and Means
colSums-method Form Row and Column Sums and Means
colSums.spam Form Row and Column Sums and Means
Compare-method Class "spam"
complexities Complexity for Sparse Matrices
complexity Complexity for Sparse Matrices
cos Mathematical functions
cov.exp Covariance functions
cov.mat Covariance functions
cov.nug Covariance functions
cov.sph Covariance functions
cov.wend1 Covariance functions
cov.wend2 Covariance functions
cov.wu1 Covariance functions
cov.wu2 Covariance functions
cov.wu3 Covariance functions
covmat Covariance functions
cumprod Mathematical functions
cumsum Mathematical functions

-- D --

det Calculate the determinant of a positive definite Sparse Matrix
det-method Calculate the determinant of a positive definite Sparse Matrix
det.spam Calculate the determinant of a positive definite Sparse Matrix
determinant Calculate the determinant of a positive definite Sparse Matrix
determinant-method Calculate the determinant of a positive definite Sparse Matrix
determinant-method Class "spam.chol.NgPeyton"
determinant.spam Calculate the determinant of a positive definite Sparse Matrix
determinant.spam.chol Calculate the determinant of a positive definite Sparse Matrix
determinant.spam.chol.NgPeyton Calculate the determinant of a positive definite Sparse Matrix
diag Sparse Matrix diagonals
diag-method Sparse Matrix diagonals
diag-method Class "spam.chol.NgPeyton"
diag.assign-method Sparse Matrix diagonals
diag.of.spam Sparse Matrix diagonals
diag.spam Sparse Matrix diagonals
diag.spam<- Sparse Matrix diagonals
diag<- Sparse Matrix diagonals
diag<--method Sparse Matrix diagonals
diag<-.spam Sparse Matrix diagonals
dim-method Basic Linear Algebra for Sparse Matrices
dim-method Class "spam.chol.NgPeyton"
dim<--method Dimensions of an Object
dim<--method Class "spam.chol.NgPeyton"
dim<-.spam Dimensions of an Object
display Graphially Represent the Nonzero Entries
display-method Graphially Represent the Nonzero Entries
display-method Class "spam.chol.NgPeyton"
display.spam Graphially Represent the Nonzero Entries
dist.spam Distance Matrix Computation
distance Distance Matrix Computation

-- E --

exp Mathematical functions

-- F --

floor Mathematical functions
foreign Transformation to other sparse formats
forwardsolve Linear Equation Solving for Sparse Matrices
forwardsolve-method Linear Equation Solving for Sparse Matrices
forwardsolve-method Class "spam.chol.NgPeyton"
forwardsolve-methods Linear Equation Solving for Sparse Matrices
forwardsolve.spam Linear Equation Solving for Sparse Matrices

-- G --

gamma Mathematical functions
germany Meta-data about administrative districts of Germany
germany.data Meta-data about administrative districts of Germany
germany.graph Administrative districts of Germany
germany.info Meta-data about administrative districts of Germany
germany.plot Plot administrative districts of Germany
germany.poly Meta-data about administrative districts of Germany
germany.spam Meta-data about administrative districts of Germany
grid_trace2 Two trace plots and a scatter plot.
grid_zoom grid_zoom

-- H --

head Return the First or Last Part of an Object
head-method Return the First or Last Part of an Object
head.spam Return the First or Last Part of an Object

-- I --

image Display a spam Object as Color Image
image-method Display a spam Object as Color Image
image-method Class "spam.chol.NgPeyton"
image.spam Display a spam Object as Color Image
import Read External Matrix Formats
initialize-method Sparse Matrix Class
is.spam Sparse Matrix Class
isSymmetric-method Test if a spam matrix is Symmetric
isSymmetric.spam Test if a spam matrix is Symmetric

-- K --

kronecker-method Class "spam"
kronecker.default Kronecker Products on Sparse Matrices
kronecker.spam Kronecker Products on Sparse Matrices

-- L --

length-method Class "spam"
length-method Class "spam.chol.NgPeyton"
length<--method Class "spam"
length<--method Class "spam.chol.NgPeyton"
lgamma Mathematical functions
log Mathematical functions
log10 Mathematical functions
lower.tri Lower and Upper Triangular Part of a Sparse Matrix
lower.tri-method Class "spam"
lower.tri.spam Lower and Upper Triangular Part of a Sparse Matrix

-- M --

map.landkreis Administrative districts of Germany
Math Mathematical functions
Math-method Mathematical functions
Math2 Rounding of Numbers
Math2-method Rounding of Numbers
max Rounding of Numbers
min Rounding of Numbers
mle Maximum likelihood estimates
mle.nomean Maximum likelihood estimates
mle.nomean.spam Maximum likelihood estimates
mle.spam Maximum likelihood estimates

-- N --

ncol-method Basic Linear Algebra for Sparse Matrices
nearest.dist Distance Matrix Computation
neg2loglikelihood Maximum likelihood estimates
neg2loglikelihood.spam Maximum likelihood estimates
norm Basic Linear Algebra for Sparse Matrices
norm-method Basic Linear Algebra for Sparse Matrices
norm.spam Basic Linear Algebra for Sparse Matrices
nrow-method Basic Linear Algebra for Sparse Matrices

-- O --

Ops.spam Basic Linear Algebra for Sparse Matrices
Oral Oral Cavity Cancer
Oral.spam Oral Cavity Cancer
oral.spam Oral Cavity Cancer
ordering Extract the permutation
ordering-method Extract the permutation
ordering-method Class "spam.chol.NgPeyton"
ordering-methods Extract the permutation
ordering.spam.chol Extract the permutation
ordering.spam.chol.NgPeyton Extract the permutation
overview SPArse Matrix Package

-- P --

permutation Permute a matrix
permutation-method Permute a matrix
permutation.spam Permute a matrix
plot-method Class "spam"
plot.spam Basic Linear Algebra for Sparse Matrices
powerboost Specific options Setting
precmat IGMRF Precision Matrices
precmat.GMRFreglat Create Precision Matrices
precmat.IGMRFirreglat IGMRF Precision Matrices
precmat.IGMRFreglat IGMRF Precision Matrices
precmat.RW1 IGMRF Precision Matrices
precmat.RW2 IGMRF Precision Matrices
precmat.RWn IGMRF Precision Matrices
precmat.season IGMRF Precision Matrices
print Printing and summarizing sparse matrices
print-method Printing and summarizing sparse matrices
print-method Class "spam.chol.NgPeyton"
print.spam Printing and summarizing sparse matrices
print.spam.chol Printing and summarizing sparse matrices
print.spam.chol.NgPeyton Printing and summarizing sparse matrices
prod Rounding of Numbers

-- R --

range Rounding of Numbers
rbind Combine spam Matrices by Rows or Columns
rbind-method Combine spam Matrices by Rows or Columns
rbind.spam Combine spam Matrices by Rows or Columns
read.HB Read External Matrix Formats
read.MM Read External Matrix Formats
rmvnorm.canonical Draw Multivariate Normals
rmvnorm.canonical.const Draw Constrainted Multivariate Normals
rmvnorm.const Draw Constrainted Multivariate Normals
rmvnorm.prec Draw Multivariate Normals
rmvnorm.prec.const Draw Constrainted Multivariate Normals
rmvnorm.spam Draw Multivariate Normals
round Rounding of Numbers
rowMeans Form Row and Column Sums and Means
rowMeans-method Form Row and Column Sums and Means
rowMeans.spam Form Row and Column Sums and Means
rowSums Form Row and Column Sums and Means
rowSums-method Form Row and Column Sums and Means
rowSums.spam Form Row and Column Sums and Means

-- S --

show-method Class "spam"
show-method Class "spam.chol.NgPeyton"
signif Rounding of Numbers
sin Mathematical functions
solve-method Linear Equation Solving for Sparse Matrices
solve.spam Linear Equation Solving for Sparse Matrices
SPAM SPArse Matrix Package
Spam SPArse Matrix Package
spam Sparse Matrix Class
spam-class Class "spam"
spam-method Sparse Matrix Class
spam.chol.NgPeyton-class Class "spam.chol.NgPeyton"
spam.class Class "spam"
spam.creation Sparse Matrix Class
spam.getOption Options Settings
spam.list Sparse Matrix Class
spam.numeric Sparse Matrix Class
spam.ops Basic Linear Algebra for Sparse Matrices
spam.options Options Settings
spam.Version Spam Version Information
spam.version Spam Version Information
sqrt Mathematical functions
subset.rows.spam Basic Linear Algebra for Sparse Matrices
subset.spam Basic Linear Algebra for Sparse Matrices
sum Rounding of Numbers
Summary Rounding of Numbers
summary Printing and summarizing sparse matrices
Summary-method Rounding of Numbers
summary-method Printing and summarizing sparse matrices
summary-method Class "spam.chol.NgPeyton"
Summary.spam Rounding of Numbers
summary.spam Printing and summarizing sparse matrices
summary.spam.chol Printing and summarizing sparse matrices
summary.spam.chol.NgPeyton Printing and summarizing sparse matrices

-- T --

t-method Class "spam"
t-method Class "spam.chol.NgPeyton"
t.spam Basic Linear Algebra for Sparse Matrices
tail Return the First or Last Part of an Object
tail-method Return the First or Last Part of an Object
tail.spam Return the First or Last Part of an Object
tan Mathematical functions
toeplitz.spam Create Toeplitz Matrices
triplet Transform a spam format to triplets
trunc Mathematical functions

-- U --

update Cholesky Factorization for Sparse Matrices
update-method Cholesky Factorization for Sparse Matrices
update.spam.chol.NgPeyton Cholesky Factorization for Sparse Matrices
upper.tri Lower and Upper Triangular Part of a Sparse Matrix
upper.tri-method Class "spam"
upper.tri.spam Lower and Upper Triangular Part of a Sparse Matrix
UScounties Adjacency structure of the counties in the contiguous United States
UScounties.ndorder Adjacency structure of the counties in the contiguous United States
UScounties.storder Adjacency structure of the counties in the contiguous United States
USprecip Monthly total precipitation (mm) for April 1948 in the contiguous United States

-- V --

validspamobject Sparse Matrix Class
version Spam Version Information

-- misc --

!=-method Basic Linear Algebra for Sparse Matrices
%%-method Basic Linear Algebra for Sparse Matrices
%*%-method Basic Linear Algebra for Sparse Matrices
%*%-methods Basic Linear Algebra for Sparse Matrices
%/%-method Basic Linear Algebra for Sparse Matrices
%d*% Basic Linear Algebra for Sparse Matrices
%d*%-method Basic Linear Algebra for Sparse Matrices
%d+% Basic Linear Algebra for Sparse Matrices
%d+%-method Basic Linear Algebra for Sparse Matrices
&-method Basic Linear Algebra for Sparse Matrices
*-method Basic Linear Algebra for Sparse Matrices
+-method Basic Linear Algebra for Sparse Matrices
--method Basic Linear Algebra for Sparse Matrices
.Spam Options Settings
/-method Basic Linear Algebra for Sparse Matrices
<-method Basic Linear Algebra for Sparse Matrices
<=-method Basic Linear Algebra for Sparse Matrices
==-method Basic Linear Algebra for Sparse Matrices
>-method Basic Linear Algebra for Sparse Matrices
>=-method Basic Linear Algebra for Sparse Matrices
[-method Class "spam"
[.spam Basic Linear Algebra for Sparse Matrices
[<--method Basic Linear Algebra for Sparse Matrices
[<--method Class "spam"
[<-.spam Basic Linear Algebra for Sparse Matrices
^-method Basic Linear Algebra for Sparse Matrices
|-method Basic Linear Algebra for Sparse Matrices