counts {DESeq2} | R Documentation |
The counts slot holds the count data as a matrix of non-negative integer count values, one row for each observational unit (gene or the like), and one column for each sample.
## S4 method for signature 'DESeqDataSet' counts(object,normalized=FALSE) ## S4 replacement method for signature 'DESeqDataSet,matrix' counts(object)<-value ## S4 method for signature 'DESeqDataSet' counts(object, normalized = FALSE)
object |
a |
normalized |
logical indicating whether or not to divide the counts by the size factors or normalization factors before returning (normalization factors always preempt size factors) |
value |
an integer matrix |
Simon Anders
sizeFactors
,
normalizationFactors
dds <- makeExampleDESeqDataSet() head(counts(dds))