coef {DESeq2} | R Documentation |
Note: results tables with log2 fold change,
p-values, adjusted p-values, etc. for each gene are best
generated using the results
function. The
coef
function is designed for advanced users who
wish to inspect all model coefficients at once.
## S3 method for class 'DESeqDataSet' coef(object, SE = FALSE, ...)
object |
a DESeqDataSet returned by
|
SE |
whether to give the standard errors instead of coefficients. defaults to FALSE so that the coefficients are given. |
... |
ignored |
Estimated model coefficients or estimated standard errors
are provided in a matrix form, number of genes by number of
parameters, on the log2 scale. The columns correspond to
columns of the model matrix for final GLM fitting, i.e.,
attr(dds, "modelMatrix")
.
Michael Love
example("DESeq") coef(dds)[1,] coef(dds, SE=TRUE)[1,]