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## S

SEED - Static variable in class edu.uci.ics.jung.random.generators.BarabasiAlbertGenerator
  Tags the initial "seed" vertices that the graph starts with
SHARED - Static variable in class edu.uci.ics.jung.utils.UserData
  A CopyAction that links UserData--that is, points to the original data.
SIMPLE_EDGE - Static variable in interface edu.uci.ics.jung.graph.Graph
SLEEK - Static variable in class edu.uci.ics.jung.visualization.contrib.Arrow
SPARSE_ROOT_KEY - Static variable in class edu.uci.ics.jung.graph.impl.SparseTree
STRETCH - Static variable in class samples.preview_new_graphdraw.iterablelayouts.SpringLayout
SUBSET_MANAGER - Static variable in interface edu.uci.ics.jung.graph.ArchetypeGraph
SatelliteAnimatedPickingGraphMousePlugin - class edu.uci.ics.jung.visualization.control.SatelliteAnimatedPickingGraphMousePlugin.
  A version of the AnimatedPickingGraphMousePlugin that is for the SatelliteVisualizationViewer.
SatelliteAnimatedPickingGraphMousePlugin() - Constructor for class edu.uci.ics.jung.visualization.control.SatelliteAnimatedPickingGraphMousePlugin
  create an instance
SatelliteAnimatedPickingGraphMousePlugin(int) - Constructor for class edu.uci.ics.jung.visualization.control.SatelliteAnimatedPickingGraphMousePlugin
SatelliteRotatingGraphMousePlugin - class edu.uci.ics.jung.visualization.control.SatelliteRotatingGraphMousePlugin.
  Mouse events in the SatelliteView that match the modifiers will cause the Main view to rotate
SatelliteRotatingGraphMousePlugin() - Constructor for class edu.uci.ics.jung.visualization.control.SatelliteRotatingGraphMousePlugin
SatelliteRotatingGraphMousePlugin(int) - Constructor for class edu.uci.ics.jung.visualization.control.SatelliteRotatingGraphMousePlugin
SatelliteScalingGraphMousePlugin - class edu.uci.ics.jung.visualization.control.SatelliteScalingGraphMousePlugin.
  Overrides ScalingGraphMousePlugin so that mouse events in the satellite view will cause scaling in the main view
SatelliteScalingGraphMousePlugin(ScalingControl, int) - Constructor for class edu.uci.ics.jung.visualization.control.SatelliteScalingGraphMousePlugin
SatelliteScalingGraphMousePlugin(ScalingControl, int, float, float) - Constructor for class edu.uci.ics.jung.visualization.control.SatelliteScalingGraphMousePlugin
SatelliteShearingGraphMousePlugin - class edu.uci.ics.jung.visualization.control.SatelliteShearingGraphMousePlugin.
  Overrides ShearingGraphMousePlugin so that mouse events in the satellite view cause shearing of the main view
SatelliteShearingGraphMousePlugin() - Constructor for class edu.uci.ics.jung.visualization.control.SatelliteShearingGraphMousePlugin
SatelliteShearingGraphMousePlugin(int) - Constructor for class edu.uci.ics.jung.visualization.control.SatelliteShearingGraphMousePlugin
SatelliteTranslatingGraphMousePlugin - class edu.uci.ics.jung.visualization.control.SatelliteTranslatingGraphMousePlugin.
  Overrides TranslatingGraphMousePlugin so that mouse events in the satellite view cause translating of the main view
SatelliteTranslatingGraphMousePlugin() - Constructor for class edu.uci.ics.jung.visualization.control.SatelliteTranslatingGraphMousePlugin
SatelliteTranslatingGraphMousePlugin(int) - Constructor for class edu.uci.ics.jung.visualization.control.SatelliteTranslatingGraphMousePlugin
SatelliteViewDemo - class samples.graph.SatelliteViewDemo.
  A graph displayed in a main and a satellite view.
SatelliteViewDemo() - Constructor for class samples.graph.SatelliteViewDemo
  create an instance of a simple graph in two views with controls to demo the features.
SatelliteVisualizationViewer - class edu.uci.ics.jung.visualization.control.SatelliteVisualizationViewer.
  A VisualizationViewer that can act as a satellite view for another (master) VisualizationViewer.
SatelliteVisualizationViewer(VisualizationViewer, Layout, Renderer) - Constructor for class edu.uci.ics.jung.visualization.control.SatelliteVisualizationViewer
SatelliteVisualizationViewer(VisualizationViewer, Layout, Renderer, Dimension) - Constructor for class edu.uci.ics.jung.visualization.control.SatelliteVisualizationViewer
SatelliteVisualizationViewer(VisualizationViewer, VisualizationModel, Renderer) - Constructor for class edu.uci.ics.jung.visualization.control.SatelliteVisualizationViewer
SatelliteVisualizationViewer(VisualizationViewer, VisualizationModel, Renderer, Dimension) - Constructor for class edu.uci.ics.jung.visualization.control.SatelliteVisualizationViewer
ScalingControl - interface edu.uci.ics.jung.visualization.control.ScalingControl.
ScalingGraphMousePlugin - class edu.uci.ics.jung.visualization.control.ScalingGraphMousePlugin.
  ScalingGraphMouse applies a scaling transformation to the graph layout.
ScalingGraphMousePlugin(ScalingControl, int) - Constructor for class edu.uci.ics.jung.visualization.control.ScalingGraphMousePlugin
ScalingGraphMousePlugin(ScalingControl, int, float, float) - Constructor for class edu.uci.ics.jung.visualization.control.ScalingGraphMousePlugin
SelfLoopEdgePredicate - class edu.uci.ics.jung.graph.predicates.SelfLoopEdgePredicate.
  A predicate that checks to see whether a specified edge is a self-loop.
SelfLoopEdgePredicate() - Constructor for class edu.uci.ics.jung.graph.predicates.SelfLoopEdgePredicate
SerialFilter - class edu.uci.ics.jung.graph.filters.SerialFilter.
  This is a generic filter that takes at least two other filters and runs them seially.
SerialFilter(Filter, Filter) - Constructor for class edu.uci.ics.jung.graph.filters.SerialFilter
  Small constructor for two filters.
SerialFilter(List) - Constructor for class edu.uci.ics.jung.graph.filters.SerialFilter
  Constructor for an arbitrary list of filters.
SerialFilter() - Constructor for class edu.uci.ics.jung.graph.filters.SerialFilter
  Creates an empty list of filters.
SetHyperedge - class edu.uci.ics.jung.graph.impl.SetHyperedge.
  An implementation of `Hyperedge` that stores its collection of incident vertices internally as a `Set`.
SetHyperedge() - Constructor for class edu.uci.ics.jung.graph.impl.SetHyperedge
SetHypergraph - class edu.uci.ics.jung.graph.impl.SetHypergraph.
  A basic implementation of `Hypergraph`.
SetHypergraph() - Constructor for class edu.uci.ics.jung.graph.impl.SetHypergraph
SetHypervertex - class edu.uci.ics.jung.graph.impl.SetHypervertex.
  An implementation of `Hypervertex` that maintains independent `Set`s of incident edges and neighbors.
SetHypervertex() - Constructor for class edu.uci.ics.jung.graph.impl.SetHypervertex
SettableRenderer - class edu.uci.ics.jung.visualization.graphdraw.SettableRenderer.
  Deprecated. Replaced by PluggableRenderer.
SettableRenderer() - Constructor for class edu.uci.ics.jung.visualization.graphdraw.SettableRenderer
  Deprecated. This variant simply renders vertices as small empty boxes without labels.
SettableRenderer(StringLabeller) - Constructor for class edu.uci.ics.jung.visualization.graphdraw.SettableRenderer
  Deprecated. Creates a SettableRenderer that will be drawn in the "heavy" style: a box around the label
SettableRenderer(StringLabeller, EdgeStringer) - Constructor for class edu.uci.ics.jung.visualization.graphdraw.SettableRenderer
  Deprecated. Creates a SettableRenderer that will label edges with the given EdgeStringer.
SettableVertexLocationFunction - interface edu.uci.ics.jung.visualization.SettableVertexLocationFunction.
  An extension of `VertexLocationFunction` that provides a means to alter the location for a `ArchetypeVertex`.
SettableVertexMapper - interface edu.uci.ics.jung.utils.SettableVertexMapper.
  An interface for user-mutable `VertexMapper`s.
SettableVertexShapeFunction - interface edu.uci.ics.jung.graph.decorators.SettableVertexShapeFunction.
ShapePickSupport - class edu.uci.ics.jung.visualization.ShapePickSupport.
  ShapePickSupport provides access to Vertices and Edges based on their actual shapes.
ShapePickSupport(HasGraphLayout, LayoutTransformer, HasShapeFunctions, float) - Constructor for class edu.uci.ics.jung.visualization.ShapePickSupport
  Create an instance.
ShapePickSupport(float) - Constructor for class edu.uci.ics.jung.visualization.ShapePickSupport
ShapePickSupport() - Constructor for class edu.uci.ics.jung.visualization.ShapePickSupport
  Create an instance.
ShapeTransformer - interface edu.uci.ics.jung.visualization.transform.shape.ShapeTransformer.
  Provides methods to map points from one coordinate system to another: graph to screen and screen to graph.
ShearingGraphMousePlugin - class edu.uci.ics.jung.visualization.control.ShearingGraphMousePlugin.
  ShearingGraphMousePlugin allows the user to drag with the mouse to shear the transform either in the horizontal or vertical direction.
ShearingGraphMousePlugin() - Constructor for class edu.uci.ics.jung.visualization.control.ShearingGraphMousePlugin
  create an instance with default modifier values
ShearingGraphMousePlugin(int) - Constructor for class edu.uci.ics.jung.visualization.control.ShearingGraphMousePlugin
  create an instance with passed modifier values
ShortestPath - interface edu.uci.ics.jung.algorithms.shortestpath.ShortestPath.
ShortestPathDemo - class samples.graph.ShortestPathDemo.
ShortestPathDemo(Graph) - Constructor for class samples.graph.ShortestPathDemo
ShortestPathDemo.MyEdgePaintFunction - class samples.graph.ShortestPathDemo.MyEdgePaintFunction.
ShortestPathDemo.MyEdgePaintFunction() - Constructor for class samples.graph.ShortestPathDemo.MyEdgePaintFunction
ShortestPathDemo.MyEdgeStrokeFunction - class samples.graph.ShortestPathDemo.MyEdgeStrokeFunction.
ShortestPathDemo.MyEdgeStrokeFunction() - Constructor for class samples.graph.ShortestPathDemo.MyEdgeStrokeFunction
ShortestPathDemo.MyVertexPaintFunction - class samples.graph.ShortestPathDemo.MyVertexPaintFunction.
ShortestPathDemo.MyVertexPaintFunction() - Constructor for class samples.graph.ShortestPathDemo.MyVertexPaintFunction
ShortestPathDemoDriver - class samples.graph.ShortestPathDemoDriver.
ShortestPathDemoDriver() - Constructor for class samples.graph.ShortestPathDemoDriver
ShortestPathUtils - class edu.uci.ics.jung.algorithms.shortestpath.ShortestPathUtils.
ShortestPathUtils() - Constructor for class edu.uci.ics.jung.algorithms.shortestpath.ShortestPathUtils
ShowLayouts - class samples.graph.ShowLayouts.
  A demonstrator for some of the graph layout algorithms.
ShowLayouts() - Constructor for class samples.graph.ShowLayouts
ShowLayouts.GraphChooser - class samples.graph.ShowLayouts.GraphChooser.
ShowLayouts.GraphChooser(JComboBox) - Constructor for class samples.graph.ShowLayouts.GraphChooser
SimpleDirectedSparseVertex - class edu.uci.ics.jung.graph.impl.SimpleDirectedSparseVertex.
  An implementation of `Vertex` that resides in a directed graph; none of its adjoining edges may be parallel.
SimpleDirectedSparseVertex() - Constructor for class edu.uci.ics.jung.graph.impl.SimpleDirectedSparseVertex
  Creates a new instance of a vertex for inclusion in a sparse directed graph.
SimpleEdgePredicate - class edu.uci.ics.jung.graph.predicates.SimpleEdgePredicate.
  A predicate that tests to see whether a specified edge is "simple" (neither parallel to any edge nor a self-loop).
SimpleEdgePredicate() - Constructor for class edu.uci.ics.jung.graph.predicates.SimpleEdgePredicate
SimpleEdgeRenderer - class samples.preview_new_graphdraw.impl.SimpleEdgeRenderer.
SimpleEdgeRenderer() - Constructor for class samples.preview_new_graphdraw.impl.SimpleEdgeRenderer
SimpleEdgeRenderer(Color) - Constructor for class samples.preview_new_graphdraw.impl.SimpleEdgeRenderer
SimpleGraphDraw - class samples.graph.SimpleGraphDraw.
  Illustrates the simplest possible drawing program.
SimpleGraphDraw() - Constructor for class samples.graph.SimpleGraphDraw
SimpleGraphMouse - class edu.uci.ics.jung.visualization.SimpleGraphMouse.
  SimpleGraphMouse is the original GraphMouse class that was nested in VisualizationViewer and installed as a listener for mouse events and mouse motion events.
SimpleGraphMouse(VisualizationViewer) - Constructor for class edu.uci.ics.jung.visualization.SimpleGraphMouse
  create an instance for the passed VisualizationViewer
SimpleLayoutAlgorithm - class samples.preview_new_graphdraw.staticlayouts.SimpleLayoutAlgorithm.
SimpleLayoutAlgorithm() - Constructor for class samples.preview_new_graphdraw.staticlayouts.SimpleLayoutAlgorithm
SimpleRandomGenerator - class edu.uci.ics.jung.random.generators.SimpleRandomGenerator.
  Simple graph generator where |V| vertices are generated and |E| random edges chosen pairwise uniformly
SimpleRandomGenerator(int, int) - Constructor for class edu.uci.ics.jung.random.generators.SimpleRandomGenerator
  Constructs the generator
SimpleSparseVertex - class edu.uci.ics.jung.graph.impl.SimpleSparseVertex.
  An implementation of `Vertex` that resides in a sparse graph which may contain both directed and undirected edges.
SimpleSparseVertex() - Constructor for class edu.uci.ics.jung.graph.impl.SimpleSparseVertex
  Creates a new instance of a vertex for inclusion in a sparse graph.
SimpleUndirectedSparseVertex - class edu.uci.ics.jung.graph.impl.SimpleUndirectedSparseVertex.
  An implementation of `Vertex` that resides in a undirected graph; none of its adjoining edges may be parallel.
SimpleUndirectedSparseVertex() - Constructor for class edu.uci.ics.jung.graph.impl.SimpleUndirectedSparseVertex
SimpleVertexRenderer - class samples.preview_new_graphdraw.impl.SimpleVertexRenderer.
SimpleVertexRenderer() - Constructor for class samples.preview_new_graphdraw.impl.SimpleVertexRenderer
SinkVertexPredicate - class edu.uci.ics.jung.graph.predicates.SinkVertexPredicate.
  Evaluates to `true` if and only if the specified vertex is a sink, i.e., has no outgoing directed edges.
SinkVertexPredicate() - Constructor for class edu.uci.ics.jung.graph.predicates.SinkVertexPredicate
SlightMarginTransformer - class samples.preview_new_graphdraw.transform.SlightMarginTransformer.
  This resizer ensures that there's a little space at the margins.
SlightMarginTransformer() - Constructor for class samples.preview_new_graphdraw.transform.SlightMarginTransformer
  Creates an instance of a slight margin transformer.
SlightMarginTransformer(double) - Constructor for class samples.preview_new_graphdraw.transform.SlightMarginTransformer
  Creates an instance of a slight margin transformer with the given percentage.
SourceVertexPredicate - class edu.uci.ics.jung.graph.predicates.SourceVertexPredicate.
  Evaluates to `true` if and only if the specified vertex is a source, i.e., has no incoming directed edges.
SourceVertexPredicate() - Constructor for class edu.uci.ics.jung.graph.predicates.SourceVertexPredicate
SouthernWomenApplet - class samples.graph.southern.SouthernWomenApplet.
SouthernWomenApplet() - Constructor for class samples.graph.southern.SouthernWomenApplet
SparseGraph - class edu.uci.ics.jung.graph.impl.SparseGraph.
  An implementation of `AbstractSparseGraph` that, by default, imposes no constraints on the edges and vertices that may be added to it.
SparseGraph() - Constructor for class edu.uci.ics.jung.graph.impl.SparseGraph
SparseGraph(Collection) - Constructor for class edu.uci.ics.jung.graph.impl.SparseGraph
  Creates a new SparseGraph and adds the specified edge constraints.
SparseTree - class edu.uci.ics.jung.graph.impl.SparseTree.
  An implementation of `Graph` that consists of a `Vertex` set and a `DirectedEdge` set.
SparseTree(Vertex) - Constructor for class edu.uci.ics.jung.graph.impl.SparseTree
SparseVertex - class edu.uci.ics.jung.graph.impl.SparseVertex.
  An implementation of `Vertex` that resides in a sparse graph which may contain directed and/or undirected edges, as well as parallel edges.
SparseVertex() - Constructor for class edu.uci.ics.jung.graph.impl.SparseVertex
  Creates a new instance of a vertex for inclusion in a sparse graph.
SpringLayout - class edu.uci.ics.jung.visualization.SpringLayout.
  The SpringLayout package represents a visualization of a set of nodes.
SpringLayout(Graph) - Constructor for class edu.uci.ics.jung.visualization.SpringLayout
  Constructor for a SpringLayout for a raw graph with associated dimension--the input knows how big the graph is.
SpringLayout(Graph, SpringLayout.LengthFunction) - Constructor for class edu.uci.ics.jung.visualization.SpringLayout
  Constructor for a SpringLayout for a raw graph with associated component.
SpringLayout - class samples.preview_new_graphdraw.iterablelayouts.SpringLayout.
  The SpringLayout package represents a visualization of a set of nodes.
SpringLayout() - Constructor for class samples.preview_new_graphdraw.iterablelayouts.SpringLayout
SpringLayout.LengthFunction - interface edu.uci.ics.jung.visualization.SpringLayout.LengthFunction.
  If the edge is weighted, then override this method to show what the visualized length is.
SpringLayout.SpringDimensionChecker - class edu.uci.ics.jung.visualization.SpringLayout.SpringDimensionChecker.
SpringLayout.SpringDimensionChecker() - Constructor for class edu.uci.ics.jung.visualization.SpringLayout.SpringDimensionChecker
SpringLayout.SpringEdge - class samples.preview_new_graphdraw.iterablelayouts.SpringLayout.SpringEdge.
SpringLayout.SpringEdge(Edge, VisVertex, VisVertex) - Constructor for class samples.preview_new_graphdraw.iterablelayouts.SpringLayout.SpringEdge
SpringLayout.SpringEdgeData - class edu.uci.ics.jung.visualization.SpringLayout.SpringEdgeData.
SpringLayout.SpringEdgeData(Edge) - Constructor for class edu.uci.ics.jung.visualization.SpringLayout.SpringEdgeData
SpringLayout.SpringVertex - class samples.preview_new_graphdraw.iterablelayouts.SpringLayout.SpringVertex.
SpringLayout.SpringVertex(Vertex, double, double) - Constructor for class samples.preview_new_graphdraw.iterablelayouts.SpringLayout.SpringVertex
SpringLayout.SpringVertexData - class edu.uci.ics.jung.visualization.SpringLayout.SpringVertexData.
SpringLayout.SpringVertexData() - Constructor for class edu.uci.ics.jung.visualization.SpringLayout.SpringVertexData
SpringLayout.UnitLengthFunction - class edu.uci.ics.jung.visualization.SpringLayout.UnitLengthFunction.
  Returns all edges as the same length: the input value
SpringLayout.UnitLengthFunction(int) - Constructor for class edu.uci.ics.jung.visualization.SpringLayout.UnitLengthFunction
StaticGraphDraw - class samples.preview_new_graphdraw.impl.StaticGraphDraw.
StaticGraphDraw() - Constructor for class samples.preview_new_graphdraw.impl.StaticGraphDraw
StaticGraphDraw - class samples.preview_new_graphdraw.test.StaticGraphDraw.
StaticGraphDraw() - Constructor for class samples.preview_new_graphdraw.test.StaticGraphDraw
StaticLayout - class edu.uci.ics.jung.visualization.StaticLayout.
StaticLayout(Graph) - Constructor for class edu.uci.ics.jung.visualization.StaticLayout
StaticLayout - class samples.preview_new_graphdraw.StaticLayout.
StaticLayout() - Constructor for class samples.preview_new_graphdraw.StaticLayout
StatisticalMoments - class edu.uci.ics.jung.statistics.StatisticalMoments.
  A data structure representing the central moments of a distribution including: the mean the variance the skewness the kurtosis
  Data values that are observed are passed into this data structure via the accumulate(...) method and the corresponding central moments are updated on each call
StatisticalMoments() - Constructor for class edu.uci.ics.jung.statistics.StatisticalMoments
  Default constructor methods: declare space for 5 moments.
StatisticalMoments(int) - Constructor for class edu.uci.ics.jung.statistics.StatisticalMoments
  General constructor methods.
StatusCallback - interface edu.uci.ics.jung.visualization.StatusCallback.
  This thin interface is used to allow the `GraphDraw` and `_VisualizationViewer` systems to get status reports from `Layout`s.
StringInputStream - class edu.uci.ics.jung.utils.StringInputStream.
  Deprecated. As of JUNG version 1.5.2. Use `java.io.StringReader` instead.
StringInputStream(String) - Constructor for class edu.uci.ics.jung.utils.StringInputStream
  Deprecated. Composes a stream from a String
StringLabeller - class edu.uci.ics.jung.graph.decorators.StringLabeller.
  A StringLabeller applies a set of labels to a Graph.
StringLabeller(Graph) - Constructor for class edu.uci.ics.jung.graph.decorators.StringLabeller
StringLabeller.UniqueLabelException - exception edu.uci.ics.jung.graph.decorators.StringLabeller.UniqueLabelException.
  A minor class to store exceptions from duplicate labels in the Graph.
StringLabeller.UniqueLabelException(String) - Constructor for class edu.uci.ics.jung.graph.decorators.StringLabeller.UniqueLabelException
StringLabellerVertexMapper - class edu.uci.ics.jung.utils.StringLabellerVertexMapper.
  Maps one vertex to another based on their common label in specified `StringLabeller` instances.
StringLabellerVertexMapper(ArchetypeGraph) - Constructor for class edu.uci.ics.jung.utils.StringLabellerVertexMapper
StringLabellerVertexMapper(StringLabeller, StringLabeller) - Constructor for class edu.uci.ics.jung.utils.StringLabellerVertexMapper
StructuralHoles - class edu.uci.ics.jung.algorithms.metrics.StructuralHoles.
  Calculates some of the measures from Burt's text "Structural Holes: The Social Structure of Competition".
StructuralHoles(NumberEdgeValue) - Constructor for class edu.uci.ics.jung.algorithms.metrics.StructuralHoles
  Creates a `StructuralHoles` instance based on the edge weights specified by `nev`.
StructurallyEquivalent - class edu.uci.ics.jung.algorithms.blockmodel.StructurallyEquivalent.
  Checks a graph for sets of structurally equivalent vertices: vertices that share all the same edges.
StructurallyEquivalent() - Constructor for class edu.uci.ics.jung.algorithms.blockmodel.StructurallyEquivalent
StructurallyEquivalentII - class edu.uci.ics.jung.algorithms.blockmodel.StructurallyEquivalentII.
  Checks a graph for sets of structurally equivalent vertices: vertices that share all the same edges.
StructurallyEquivalentII() - Constructor for class edu.uci.ics.jung.algorithms.blockmodel.StructurallyEquivalentII
SubLayout - interface edu.uci.ics.jung.visualization.subLayout.SubLayout.
  A special purpose helper for a Layout, that will provide locations foe Vertices.
SubLayoutDecorator - class edu.uci.ics.jung.visualization.subLayout.SubLayoutDecorator.
  Extends the base decorator class and overrides methods to cause the location methods to check with the sublayouts for location information
SubLayoutDecorator(Layout) - Constructor for class edu.uci.ics.jung.visualization.subLayout.SubLayoutDecorator
SubLayoutDemo - class samples.graph.SubLayoutDemo.
  Demonstrates the Cluster, CircularCluster, and ClusteringLayout classes.
SubLayoutDemo() - Constructor for class samples.graph.SubLayoutDemo
  create an instance of a simple graph with controls to demo the zoomand hyperbolic features.
SubsetManager - class edu.uci.ics.jung.utils.SubsetManager.
  A class which allows users to create and maintain `Predicate`-specified vertex and edge subsets.
SubsetManager(ArchetypeGraph) - Constructor for class edu.uci.ics.jung.utils.SubsetManager
  Creates a `SubsetManager`, adds it to the specified graph's user data repository, and adds itself as a listener to the graph's vertex and edge addition and removal events, so that the subsets' memberships can be maintained.
samples.graph - package samples.graph
  Provides sample graph code that may be of interest.
samples.graph.southern - package samples.graph.southern
samples.preview_new_graphdraw - package samples.preview_new_graphdraw
  This module provides a new way of thinking about graph drawing.
samples.preview_new_graphdraw.event - package samples.preview_new_graphdraw.event
samples.preview_new_graphdraw.impl - package samples.preview_new_graphdraw.impl
samples.preview_new_graphdraw.impl.crooked - package samples.preview_new_graphdraw.impl.crooked
samples.preview_new_graphdraw.iter - package samples.preview_new_graphdraw.iter
samples.preview_new_graphdraw.iterablelayouts - package samples.preview_new_graphdraw.iterablelayouts
samples.preview_new_graphdraw.staticlayouts - package samples.preview_new_graphdraw.staticlayouts
samples.preview_new_graphdraw.test - package samples.preview_new_graphdraw.test
samples.preview_new_graphdraw.transform - package samples.preview_new_graphdraw.transform
satisfiesEdgeConstraint(ArchetypeGraph, Predicate) - Static method in class edu.uci.ics.jung.utils.PredicateUtils
  Returns `true` if each edge in `g` satisfies `p`, and false otherwise.
satisfiesPredicate(Collection, Predicate) - Static method in class edu.uci.ics.jung.utils.PredicateUtils
  Returns `true` if all elements of `c` satisfy `p`.
satisfiesVertexConstraint(ArchetypeGraph, Predicate) - Static method in class edu.uci.ics.jung.utils.PredicateUtils
  Returns `true` if each vertex in `g` satisfies `p`, and false otherwise.
save(Graph, String) - Method in interface edu.uci.ics.jung.io.GraphFile
  Save a graph to disk per the appropriate format
save(Graph, String) - Method in class edu.uci.ics.jung.io.GraphMLFile
save(Graph, PrintStream) - Method in class edu.uci.ics.jung.io.GraphMLFile
save(Graph, String) - Method in class edu.uci.ics.jung.io.MatrixFile
save(Graph, String) - Method in class edu.uci.ics.jung.io.PajekNetFile
  Deprecated. Writes `graph` to the file specified by `filename` in the Pajek NET format.
save(Graph, String, VertexStringer, NumberEdgeValue, VertexLocationFunction) - Method in class edu.uci.ics.jung.io.PajekNetWriter
  Saves `g` to `filename`.
save(Graph, String, VertexStringer, NumberEdgeValue) - Method in class edu.uci.ics.jung.io.PajekNetWriter
save(Graph, String) - Method in class edu.uci.ics.jung.io.PajekNetWriter
  Saves `g` to `filename`; no vertex labels are written out, and the edge weights are written as 1.0.
save(Graph, Writer) - Method in class edu.uci.ics.jung.io.PajekNetWriter
  Saves `g` to `w`; no vertex labels are written out, and the edge weights are written as 1.0.
save(Graph, Writer, VertexStringer, NumberEdgeValue) - Method in class edu.uci.ics.jung.io.PajekNetWriter
save(Graph, Writer, VertexStringer, NumberEdgeValue, VertexLocationFunction) - Method in class edu.uci.ics.jung.io.PajekNetWriter
  Writes `graph` to `w`.
saveDistribution(Histogram, String) - Static method in class edu.uci.ics.jung.statistics.DegreeDistributions
  Saves the empirical degree distribution to a file in the ascii flat file where each line has the following format: <# of vertices with this degree>
savedViewTransformer - Variable in class edu.uci.ics.jung.visualization.transform.AbstractLensSupport
scale(VertexLocationFunction, double, double) - Static method in class edu.uci.ics.jung.visualization.VertexLocationUtils
scale(double, double) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer
  Deprecated. access via getViewTransformer method
scale(double, double, Point2D) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer
  Deprecated. access via getViewTransformer method
scale(VisualizationViewer, float, Point2D) - Method in class edu.uci.ics.jung.visualization.control.AbsoluteCrossoverScalingControl
  scale to the absolute value passed as 'amount'.
scale(VisualizationViewer, float, Point2D) - Method in class edu.uci.ics.jung.visualization.control.CrossoverScalingControl
scale(VisualizationViewer, float, Point2D) - Method in class edu.uci.ics.jung.visualization.control.LayoutScalingControl
  zoom the display in or out, depending on the direction of the mouse wheel motion.
scale(VisualizationViewer, float, Point2D) - Method in interface edu.uci.ics.jung.visualization.control.ScalingControl
  zoom the display in or out
scale(VisualizationViewer, float, Point2D) - Method in class edu.uci.ics.jung.visualization.control.ViewScalingControl
  zoom the display in or out, depending on the direction of the mouse wheel motion.
scale(double, double, Point2D) - Method in class edu.uci.ics.jung.visualization.transform.MutableAffineTransformer
  setter for the scale fires a PropertyChangeEvent with the AffineTransforms representing the previous and new values for scale and offset
scale(double, double, Point2D) - Method in interface edu.uci.ics.jung.visualization.transform.MutableTransformer
scale(double, double, Point2D) - Method in class edu.uci.ics.jung.visualization.transform.MutableTransformerDecorator
scale(double, double) - Method in class edu.uci.ics.jung.visualization.transform.shape.GraphicsDecorator
scale(Coordinates, double, double) - Static method in class samples.preview_new_graphdraw.CoordinateUtil
scale(Dimension, Dimension) - Method in class samples.preview_new_graphdraw.Coordinates
scaleToLayout(Dimension) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer
scaler - Variable in class edu.uci.ics.jung.visualization.control.ScalingGraphMousePlugin
  controls scaling operations
scalex - Variable in class edu.uci.ics.jung.visualization.BirdsEyeVisualizationViewer
  Deprecated.
scalex - Variable in class edu.uci.ics.jung.visualization.Lens
  Deprecated. the scale of the BirdsEyeVisualizationViewer compared to the graph display
scaley - Variable in class edu.uci.ics.jung.visualization.BirdsEyeVisualizationViewer
  Deprecated.
scaley - Variable in class edu.uci.ics.jung.visualization.Lens
  Deprecated. the scale of the BirdsEyeVisualizationViewer compared to the graph display
scalingPlugin - Variable in class edu.uci.ics.jung.visualization.ZoomPanGraphMouse
scalingPlugin - Variable in class edu.uci.ics.jung.visualization.control.AbstractModalGraphMouse
scalingPlugin - Variable in class edu.uci.ics.jung.visualization.control.EditingModalGraphMouse
screenDevice - Variable in class edu.uci.ics.jung.visualization.PluggableRenderer
  the JComponent that this Renderer will display the graph on
screenSize - Variable in class samples.preview_new_graphdraw.AbstractLayout
screenSize - Variable in class samples.preview_new_graphdraw.EmittedLayout
scrollBarsMayControlAdjusting - Variable in class edu.uci.ics.jung.visualization.GraphZoomScrollPane
self_loop - Static variable in class edu.uci.ics.jung.visualization.PluggableRenderer
self_loop - Static variable in class edu.uci.ics.jung.visualization.graphdraw.SettableRenderer
  Deprecated.
set(Vertex, Map, int) - Method in class edu.uci.ics.jung.algorithms.cluster.BicomponentClusterer
  A convenience method for setting an integer value for `v` in Map `m`.
setAcceptThoseAboveThreshhold(boolean) - Method in class edu.uci.ics.jung.graph.filters.impl.AlphabeticVertexFilter
  Sets the acceptThoseAboveThreshhold: if true, this accepts values over the threshhold; if false, this accepts values up to and including the threshhold, but not above it.
setAdjustForGravity(boolean) - Method in class edu.uci.ics.jung.visualization.contrib.KKLayout
  Enable or disable gravity point adjusting.
setAdjustForGravity(boolean) - Method in class edu.uci.ics.jung.visualization.contrib.KKLayoutInt
  Enable or disable gravity point adjusting.
setAdjustForGravity(boolean) - Method in class samples.preview_new_graphdraw.iterablelayouts.KKLayout
  Enable or disable gravity point adjusting.
setAngle(double) - Method in class edu.uci.ics.jung.visualization.contrib.CircleLayout.CircleVertexData
setArrowPlacementTolerance(float) - Method in class edu.uci.ics.jung.visualization.PluggableRenderer
  Specifies the smallest (squared) distance that an arrowhead must be moved in order for the placement code to decide that it's "close enough".
setArrowPlacementTolerance(float) - Method in class edu.uci.ics.jung.visualization.transform.shape.PluggableRendererDecorator
setAsList(boolean) - Method in class edu.uci.ics.jung.io.BipartiteGraphReader
setAspectRatioFunction(VertexAspectRatioFunction) - Method in class edu.uci.ics.jung.graph.decorators.AbstractVertexShapeFunction
setAspectRatioFunction(VertexAspectRatioFunction) - Method in interface edu.uci.ics.jung.graph.decorators.SettableVertexShapeFunction
setAttractionMultiplier(double) - Method in class edu.uci.ics.jung.visualization.FRLayout
setBackground(Color) - Method in class edu.uci.ics.jung.visualization.DefaultGraphLabelRenderer
  Overrides `JComponent.setBackground` to assign the unselected-background color to the specified color.
setBackground(Color) - Method in class edu.uci.ics.jung.visualization.GraphDraw
  Deprecated.
setBackground(Color) - Method in class edu.uci.ics.jung.visualization.contrib.BirdsEyeGraphDraw
  Deprecated.
setBackground(Color) - Method in class edu.uci.ics.jung.visualization.transform.shape.GraphicsDecorator
setClickPolicy(GraphLayoutPanelMouseListener.ClickPolicy) - Method in class samples.preview_new_graphdraw.impl.GraphLayoutPanel
setClip(int, int, int, int) - Method in class edu.uci.ics.jung.visualization.transform.shape.GraphicsDecorator
setClip(Shape) - Method in class edu.uci.ics.jung.visualization.transform.shape.GraphicsDecorator
setClusteringExponent(double) - Method in class edu.uci.ics.jung.random.generators.KleinbergSmallWorldGenerator
setColor(Color) - Method in class edu.uci.ics.jung.visualization.transform.shape.GraphicsDecorator
setComparator(Comparator) - Method in class edu.uci.ics.jung.utils.CollectionFactory.CollectionData
setComparator(Collection, Comparator) - Static method in class edu.uci.ics.jung.utils.CollectionFactory
setComposite(Composite) - Method in class edu.uci.ics.jung.visualization.transform.shape.GraphicsDecorator
setControlOffsetIncrement(float) - Method in class edu.uci.ics.jung.graph.decorators.AbstractEdgeShapeFunction
  Sets the value of `control_offset_increment`.
setCopyAction(UserDataContainer.CopyAction) - Method in class edu.uci.ics.jung.algorithms.transformation.FoldingTransformer
  Specifies the copy action used to attach data to edges.
setCopyAction(UserDataContainer.CopyAction) - Method in class edu.uci.ics.jung.graph.decorators.UserDatumNumberEdgeValue
setCopyAction(UserDataContainer.CopyAction) - Method in class edu.uci.ics.jung.graph.decorators.UserDatumNumberVertexValue
setCorner(JComponent) - Method in class edu.uci.ics.jung.visualization.GraphZoomScrollPane
setCreateDirectedOnly(boolean) - Method in class edu.uci.ics.jung.io.PajekNetFile
  Deprecated. Forces a graph that is normally undirected to be loaded in as its directed equivalent
setCrossover(double) - Method in class edu.uci.ics.jung.visualization.control.CrossoverScalingControl
  Sets the crossover point to the specified value.
setCurrentRankScore(Element, double) - Method in class edu.uci.ics.jung.algorithms.importance.KStepMarkov
setCursor(Cursor) - Method in class edu.uci.ics.jung.visualization.control.AbstractGraphMousePlugin
setDecorationKey(String) - Method in class edu.uci.ics.jung.graph.filters.impl.NumericDecorationFilter
setDelegate(VertexShapeFunction) - Method in class edu.uci.ics.jung.graph.decorators.VertexIconAndShapeFunction
setDelegate(Layout) - Method in class edu.uci.ics.jung.visualization.LayoutDecorator
  setter for the delegate
setDelegate(MutableTransformer) - Method in class edu.uci.ics.jung.visualization.transform.MutableTransformerDecorator
setDelegate(Graphics2D) - Method in class edu.uci.ics.jung.visualization.transform.shape.GraphicsDecorator
setDelegate(PluggableRenderer) - Method in class edu.uci.ics.jung.visualization.transform.shape.PluggableRendererDecorator
setDesiredPrecision(double) - Method in class edu.uci.ics.jung.algorithms.IterativeProcess
  Defines the desired precision.
setDimensions(Dimension) - Method in class samples.preview_new_graphdraw.AbstractLayout
setDirected(boolean) - Method in class edu.uci.ics.jung.io.BipartiteGraphReader
setDisconnectedDistanceMultiplier(double) - Method in class edu.uci.ics.jung.visualization.contrib.KKLayout
  Sets a multiplicative factor that specifies the fraction of the graph's diameter to be used as the inter-vertex distance between disconnected vertices.
setDisp(double, double) - Method in class edu.uci.ics.jung.visualization.FRLayout.FRVertexData
setDisp(double, double) - Method in class edu.uci.ics.jung.visualization.ISOMLayout.ISOMVertexData
setDoubleBuffered(boolean) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer
  set whether this class uses its offscreen image or not.
setDoubleValue(double) - Method in class edu.uci.ics.jung.utils.MutableDouble
  Sets the double value to a new value.
setDynamic(boolean) - Method in class edu.uci.ics.jung.utils.CollectionFactory.CollectionData
setDynamic(Collection, boolean) - Static method in class edu.uci.ics.jung.utils.CollectionFactory
  If `dynamic` is true, the collection `c` backing the `Iterator` is automatically rebuilt-sorted and/or re-filtered each time `getIterator(c)` is called.
setEdgeArrowFunction(EdgeArrowFunction) - Method in class edu.uci.ics.jung.visualization.PluggableRenderer
  Sets the `EdgeArrowFunction` that specifies the `Shape` of the arrowheads for each edge.
setEdgeArrowFunction(EdgeArrowFunction) - Method in class edu.uci.ics.jung.visualization.transform.shape.PluggableRendererDecorator
setEdgeArrowPredicate(Predicate) - Method in class edu.uci.ics.jung.visualization.PluggableRenderer
  Sets the `EdgeArrowPredicate` that specifies whether arrowheads should be drawn for each edge.
setEdgeArrowPredicate(Predicate) - Method in class edu.uci.ics.jung.visualization.transform.shape.PluggableRendererDecorator
setEdgeColor(Color) - Method in class edu.uci.ics.jung.visualization.GraphDraw
  Deprecated. Modify this property via the renderer instead.
setEdgeColor(Color) - Method in class edu.uci.ics.jung.visualization.graphdraw.SettableRenderer
  Deprecated.
setEdgeColorFunction(EdgeColorFunction) - Method in class edu.uci.ics.jung.visualization.GraphDraw
  Deprecated. Modify this property via the renderer instead.
setEdgeColorFunction(EdgeColorFunction) - Method in class edu.uci.ics.jung.visualization.PluggableRenderer
  Deprecated. Use setEdgePaintFunction instead
setEdgeColorFunction(EdgeColorFunction) - Method in class edu.uci.ics.jung.visualization.graphdraw.SettableRenderer
  Deprecated. Edges are drawn by calling `EdgeColorFunction` with the edge, to decide how it is to be drawn.
setEdgeColorFunction(EdgeColorFunction) - Method in class edu.uci.ics.jung.visualization.transform.shape.PluggableRendererDecorator
setEdgeFontFunction(EdgeFontFunction) - Method in class edu.uci.ics.jung.visualization.PluggableRenderer
  Sets the `EdgeFontFunction` that specifies the font to use for drawing each edge label.
setEdgeFontFunction(EdgeFontFunction) - Method in class edu.uci.ics.jung.visualization.transform.shape.PluggableRendererDecorator
setEdgeIncludePredicate(Predicate) - Method in class edu.uci.ics.jung.visualization.PluggableRenderer
  Sets the `Predicate` that specifies whether each edge should be drawn; only those edges for which this predicate returns `true` will be drawn.
setEdgeIncludePredicate(Predicate) - Method in class edu.uci.ics.jung.visualization.transform.shape.PluggableRendererDecorator
setEdgeKeys(String[]) - Method in class edu.uci.ics.jung.io.PajekNetFile
  Deprecated. set the edge the algorithm will use to store the edge weights
setEdgeLabelClosenessFunction(NumberEdgeValue) - Method in class edu.uci.ics.jung.visualization.PluggableRenderer
  Sets the `NumberEdgeValue` that specifies where to draw the label for each edge.
setEdgeLabelClosenessFunction(NumberEdgeValue) - Method in class edu.uci.ics.jung.visualization.transform.shape.PluggableRendererDecorator
setEdgePaintFunction(EdgePaintFunction) - Method in class edu.uci.ics.jung.visualization.PluggableRenderer
setEdgePaintFunction(EdgePaintFunction) - Method in class edu.uci.ics.jung.visualization.transform.shape.PluggableRendererDecorator
setEdgeShapeFunction(EdgeShapeFunction) - Method in class edu.uci.ics.jung.visualization.PluggableRenderer
  setter for the EdgeShapeFunction
setEdgeShapeFunction(EdgeShapeFunction) - Method in class edu.uci.ics.jung.visualization.transform.shape.PluggableRendererDecorator
setEdgeStringer(EdgeStringer) - Method in class edu.uci.ics.jung.visualization.PluggableRenderer
  Sets the `EdgeStringer` that specifies the label to draw for each edge.
setEdgeStringer(EdgeStringer) - Method in class edu.uci.ics.jung.visualization.transform.shape.PluggableRendererDecorator
setEdgeStrokeFunction(EdgeStrokeFunction) - Method in class edu.uci.ics.jung.visualization.PluggableRenderer
  Sets the `EdgeStrokeFunction` that specifies the `Stroke` to use when drawing each edge.
setEdgeStrokeFunction(EdgeStrokeFunction) - Method in class edu.uci.ics.jung.visualization.transform.shape.PluggableRendererDecorator
setEdgeThickness(int) - Method in class edu.uci.ics.jung.visualization.GraphDraw
  Deprecated. Modify this property via the renderer instead.
setEdgeThickness(int) - Method in class edu.uci.ics.jung.visualization.graphdraw.SettableRenderer
  Deprecated. Forces all edges to draw with this thickness.
setEdgeThicknessFunction(EdgeThicknessFunction) - Method in class edu.uci.ics.jung.visualization.GraphDraw
  Deprecated. Modify this property via the renderer instead.
setEdgeThicknessFunction(EdgeThicknessFunction) - Method in class edu.uci.ics.jung.visualization.graphdraw.SettableRenderer
  Deprecated. This version takes a function that dynamically chooses an edge thickness.
setEdgeWeight(Edge, double) - Method in class edu.uci.ics.jung.algorithms.importance.AbstractRanker
setEditingMode() - Method in class edu.uci.ics.jung.visualization.control.EditingModalGraphMouse
setEllipse(Ellipse2D) - Method in class edu.uci.ics.jung.visualization.transform.LensTransformer
setEnabled(boolean) - Method in class samples.graph.VertexImageShaperDemo.VertexStringerImpl
setExchangeVertices(boolean) - Method in class edu.uci.ics.jung.visualization.contrib.KKLayout
  Enable or disable the local minimum escape technique by exchanging vertices.
setExchangeVertices(boolean) - Method in class edu.uci.ics.jung.visualization.contrib.KKLayoutInt
  Enable or disable the local minimum escape technique by exchanging vertices.
setExchangeVertices(boolean) - Method in class samples.preview_new_graphdraw.iterablelayouts.KKLayout
  Enable or disable the local minimum escape technique by exchanging vertices.
setFillImages(boolean) - Method in class samples.graph.VertexImageShaperDemo.DemoVertexImageShapeFunction
setFont(Font) - Method in class edu.uci.ics.jung.visualization.transform.shape.GraphicsDecorator
setForceMultiplier(double) - Method in class edu.uci.ics.jung.visualization.SpringLayout
  Sets the force multiplier for this instance.
setForeground(Color) - Method in class edu.uci.ics.jung.visualization.DefaultGraphLabelRenderer
  Overrides `JComponent.setForeground` to assign the unselected-foreground color to the specified color.
setFrame(VisualizationViewer) - Method in class edu.uci.ics.jung.visualization.Lens
  Deprecated.
setGetLocations(boolean) - Method in class edu.uci.ics.jung.io.PajekNetReader
  Sets or clears the `get_locations` boolean.
setGraph(HypergraphBPG) - Method in class edu.uci.ics.jung.graph.impl.AbstractHyperUnitBPG
  Deprecated.
setGraphLabelRenderer(GraphLabelRenderer) - Method in class edu.uci.ics.jung.visualization.PluggableRenderer
setGraphLabelRenderer(GraphLabelRenderer) - Method in class edu.uci.ics.jung.visualization.transform.shape.PluggableRendererDecorator
setGraphLayout(Layout) - Method in class edu.uci.ics.jung.visualization.BirdsEyeVisualizationViewer
  Deprecated. setter for layout
setGraphLayout(Layout, Dimension) - Method in class edu.uci.ics.jung.visualization.DefaultVisualizationModel
  Removes the current graph layout, and adds a new one.
setGraphLayout(Layout) - Method in class edu.uci.ics.jung.visualization.DefaultVisualizationModel
  set the graph Layout and if it is not already initialized, initialize it to the default VisualizationViewer preferred size of 600x600
setGraphLayout(Layout) - Method in class edu.uci.ics.jung.visualization.GraphDraw
  Deprecated. Use getVisualizationViewer.setGraphLayout(l) instead.
setGraphLayout(Layout) - Method in interface edu.uci.ics.jung.visualization.VisualizationModel
  set the graph Layout
setGraphLayout(Layout, Dimension) - Method in interface edu.uci.ics.jung.visualization.VisualizationModel
  Sets the graph Layout and initialize the Layout size to the passed dimensions.
setGraphLayout(Layout) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer
  Removes the current graph layout, and adds a new one.
setGraphLayout(Layout, boolean) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer
  Removes the current graph layout, and adds a new one, optionally re-scaling the view to show the entire layout
setGraphLayout(Layout) - Method in class edu.uci.ics.jung.visualization.contrib.BirdsEyeGraphDraw
  Deprecated. Dynamically chooses a new GraphLayout.
setGraphMLFileHandler(GraphMLFileHandler) - Method in class edu.uci.ics.jung.io.GraphMLFile
  Allows the user to provide his/her own subclassed GraphML file handerl
setGraphMouse(VisualizationViewer.GraphMouse) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer
  a setter for the GraphMouse.
setGrowthAllowed() - Method in class edu.uci.ics.jung.statistics.Histogram
  Allows histogram contents to grow in order to contain all accumulated values.
setHasGraphLayout(HasGraphLayout) - Method in interface edu.uci.ics.jung.visualization.PickSupport
setHasGraphLayout(HasGraphLayout) - Method in class edu.uci.ics.jung.visualization.RadiusPickSupport
  called by VisualizationViewer when this PickSupport impl is added to VisualizationViewer.
setHasGraphLayout(HasGraphLayout) - Method in class edu.uci.ics.jung.visualization.ShapePickSupport
  called by a HasLayout impl (like VisualizationViewer) when this PickSupport impl is added to it.
setHasShapes(HasShapeFunctions) - Method in class edu.uci.ics.jung.visualization.ShapePickSupport
setHiddenList(List) - Method in class samples.graph.southern.BipartiteVertexRenderer
setIconMap(Map) - Method in class edu.uci.ics.jung.graph.decorators.DefaultVertexIconFunction
  Sets the icon storage to the specified `Map`.
setIn(float) - Method in class edu.uci.ics.jung.visualization.control.ScalingGraphMousePlugin
setInEdgeWeight(Edge, double) - Method in class edu.uci.ics.jung.algorithms.importance.HITSWithPriors
setInteger(int) - Method in class edu.uci.ics.jung.utils.MutableInteger
  Sets the value of this object to `newInteger`.
setIntegerBinWidth() - Method in class edu.uci.ics.jung.statistics.Histogram
  Forces the bin width of the histogram to be integer.
setIterationDelay(long) - Method in class samples.preview_new_graphdraw.iter.LayoutIterator
setLabel(Vertex, String) - Method in class edu.uci.ics.jung.graph.decorators.GlobalStringLabeller
  Associates a Vertex with a Label, overrwriting any previous labels on this vertex or vertices equal to it.
setLabel(Vertex, String) - Method in class edu.uci.ics.jung.graph.decorators.StringLabeller
  Associates a Vertex with a Label, overrwriting any previous labels on this vertex.
setLabel(Vertex, String) - Method in class edu.uci.ics.jung.graph.decorators.ToStringLabeller
  This method always throws an IllegalArgument exception: you cannot externally set the setstring method.
setLabel(String) - Method in class samples.graph.BasicRenderer
setLabellerTo(Graph, Object) - Static method in class edu.uci.ics.jung.graph.decorators.GlobalStringLabeller
  Sets the StringLabeller of this graph, at this key, to be a ToStringLabeller.
setLabellerTo(Graph) - Static method in class edu.uci.ics.jung.graph.decorators.GlobalStringLabeller
  Sets the default StringLabeller of this graph to be a ToStringLabeller.
setLabellerTo(Graph, Object) - Static method in class edu.uci.ics.jung.graph.decorators.ToStringLabeller
  Sets the StringLabeller of this graph, at this key, to be a ToStringLabeller.
setLabellerTo(Graph) - Static method in class edu.uci.ics.jung.graph.decorators.ToStringLabeller
  Sets the default StringLabeller of this graph to be a ToStringLabeller.
setLayout(Layout) - Method in interface edu.uci.ics.jung.visualization.GraphElementAccessor
  Sets the `Layout` that is used to specify the locations of vertices and edges in this instance to `layout`.
setLayout(Layout) - Method in class edu.uci.ics.jung.visualization.RadiusGraphElementAccessor
setLayout(Layout) - Method in class edu.uci.ics.jung.visualization.ShapePickSupport
  `ShapePickSupport` gets its layout from its VisualizationViewer, so this method currently does nothing.
setLayoutDisplay(EmittedLayout) - Method in class samples.preview_new_graphdraw.impl.GraphLayoutPanel
  We maintain, in memory, two layouts.
setLayoutTransformer(MutableTransformer) - Method in class edu.uci.ics.jung.visualization.BirdsEyeVisualizationViewer
  Deprecated.
setLayoutTransformer(LayoutTransformer) - Method in class edu.uci.ics.jung.visualization.ShapePickSupport
  When this PickSupport is set on a VisualizationViewer, the VisualizationViewer calls this method to pass its layout transformer in
setLayoutTransformer(MutableTransformer) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer
setLengthFactor(double) - Method in class edu.uci.ics.jung.visualization.contrib.KKLayout
  Sets a multiplicative factor which partly specifies the "preferred" length of an edge (L).
setLensColor(Color) - Method in class edu.uci.ics.jung.visualization.control.PickingGraphMousePlugin
setLightDrawing(boolean) - Method in class edu.uci.ics.jung.visualization.graphdraw.SettableRenderer
  Deprecated. Creates a SettableRenderer that will be drawn in the "light" style: a colored box next to text, instead of text overlaying the box.
setLocation(ArchetypeVertex, Point2D) - Method in class edu.uci.ics.jung.visualization.DefaultSettableVertexLocationFunction
setLocation(ArchetypeVertex, Point2D) - Method in interface edu.uci.ics.jung.visualization.SettableVertexLocationFunction
setLocked(boolean) - Method in class edu.uci.ics.jung.visualization.control.PickingGraphMousePlugin
setMagnification(float) - Method in class edu.uci.ics.jung.visualization.transform.LensTransformer
setMaxDistance(double) - Method in class edu.uci.ics.jung.algorithms.shortestpath.DijkstraDistance
  Allows the user to specify the maximum distance that this instance will calculate.
setMaxIterations(int) - Method in class edu.uci.ics.jung.visualization.FRLayout
setMaxIterations(int) - Method in class edu.uci.ics.jung.visualization.contrib.KKLayout
setMaxIterations(int) - Method in class edu.uci.ics.jung.visualization.contrib.KKLayoutInt
setMaxSize(int) - Method in class edu.uci.ics.jung.graph.decorators.InterpolatingVertexSizeFunction
setMaxTargets(int) - Method in class edu.uci.ics.jung.algorithms.shortestpath.DijkstraDistance
  Allows the user to specify the maximum number of target vertices per source vertex for which this instance will calculate distances.
setMaximumIterations(int) - Method in class edu.uci.ics.jung.algorithms.IterativeProcess
  Defines the maximum allowed number of iterations.
setMinSize(int) - Method in class edu.uci.ics.jung.graph.decorators.InterpolatingVertexSizeFunction
setMode(ModalGraphMouse.Mode) - Method in class edu.uci.ics.jung.visualization.control.AbstractModalGraphMouse
  setter for the Mode.
setMode(ModalGraphMouse.Mode) - Method in class edu.uci.ics.jung.visualization.control.EditingModalGraphMouse
  setter for the Mode.
setMode(ModalGraphMouse.Mode) - Method in interface edu.uci.ics.jung.visualization.control.ModalGraphMouse
setModel(VisualizationModel) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer
setModifiers(int) - Method in class edu.uci.ics.jung.visualization.control.AbstractGraphMousePlugin
  setter for mouse modifiers
setModifiers(int) - Method in class edu.uci.ics.jung.visualization.control.GraphMouseAdapter
setModifiers(int) - Method in interface edu.uci.ics.jung.visualization.control.GraphMousePlugin
  set the mouse event modifiers that will activate this plugin
setNeighborsToEdges(Map) - Method in class edu.uci.ics.jung.graph.impl.SimpleSparseVertex
  Sets this vertex's internal successor -> out-edge map to the specified map `succsToOutEdges`.
setNeighborsToEdges(Map) - Method in class edu.uci.ics.jung.graph.impl.SimpleUndirectedSparseVertex
  Sets this vertex's internal successor -> out-edge map to the specified map `succsToOutEdges`.
setNodeSizeScale(double) - Method in class samples.graph.BasicRenderer
setNormalizeRankings(boolean) - Method in class edu.uci.ics.jung.algorithms.importance.AbstractRanker
  Allows the user to specify whether or not s/he wants the rankings to be normalized.
setNumber(ArchetypeEdge, Number) - Method in class edu.uci.ics.jung.graph.decorators.ConstantDirectionalEdgeValue
setNumber(ArchetypeEdge, Number) - Method in class edu.uci.ics.jung.graph.decorators.ConstantEdgeValue
setNumber(ArchetypeEdge, Number) - Method in class edu.uci.ics.jung.graph.decorators.EdgeWeightLabeller
setNumber(ArchetypeVertex, Number) - Method in class edu.uci.ics.jung.graph.decorators.MapNumberVertexValue
setNumber(ArchetypeEdge, Number) - Method in interface edu.uci.ics.jung.graph.decorators.NumberEdgeValue
setNumber(ArchetypeVertex, Number) - Method in interface edu.uci.ics.jung.graph.decorators.NumberVertexValue
setNumber(ArchetypeEdge, Number) - Method in class edu.uci.ics.jung.graph.decorators.UserDatumNumberEdgeValue
setNumber(ArchetypeVertex, Number) - Method in class edu.uci.ics.jung.graph.decorators.UserDatumNumberVertexValue
setNumberVertexValue(NumberVertexValue) - Method in class edu.uci.ics.jung.graph.decorators.InterpolatingVertexSizeFunction
setOffset(double, double) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer
  Deprecated. use setTranslate(double, offset, double offset)
setOut(float) - Method in class edu.uci.ics.jung.visualization.control.ScalingGraphMousePlugin
setOutlineImages(boolean) - Method in class samples.graph.VertexImageShaperDemo.DemoVertexImageShapeFunction
setPaint(Paint) - Method in class edu.uci.ics.jung.visualization.transform.shape.GraphicsDecorator
setPaintMode() - Method in class edu.uci.ics.jung.visualization.transform.shape.GraphicsDecorator
setParallel(boolean) - Method in class edu.uci.ics.jung.algorithms.transformation.FoldingTransformer
  Specifies whether the folded graphs create parallel edges or a decorated single edge.
setParallel(boolean) - Method in class edu.uci.ics.jung.io.BipartiteGraphReader
setParallelEdgeIndexFunction(ParallelEdgeIndexFunction) - Method in class edu.uci.ics.jung.graph.decorators.EdgeShape.BentLine
setParallelEdgeIndexFunction(ParallelEdgeIndexFunction) - Method in class edu.uci.ics.jung.graph.decorators.EdgeShape.CubicCurve
setParallelEdgeIndexFunction(ParallelEdgeIndexFunction) - Method in class edu.uci.ics.jung.graph.decorators.EdgeShape.Loop
setParallelEdgeIndexFunction(ParallelEdgeIndexFunction) - Method in interface edu.uci.ics.jung.graph.decorators.EdgeShape.ParallelRendering
setParallelEdgeIndexFunction(ParallelEdgeIndexFunction) - Method in class edu.uci.ics.jung.graph.decorators.EdgeShape.QuadCurve
setParallelEdgeIndexFunction(ParallelEdgeIndexFunction) - Method in class edu.uci.ics.jung.visualization.PluggableRenderer
setParallelEdgeIndexFunction(ParallelEdgeIndexFunction) - Method in class edu.uci.ics.jung.visualization.transform.shape.PluggableRendererDecorator
setPickSupport(PickSupport) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer
setPickedKey(PickedInfo) - Method in class edu.uci.ics.jung.visualization.AbstractRenderer
setPickedKey(PickedInfo) - Method in interface edu.uci.ics.jung.visualization.Renderer
  Deprecated. Use an independent PickedInfo instance.
setPickedKey(PickedInfo) - Method in class edu.uci.ics.jung.visualization.transform.shape.PluggableRendererDecorator
setPickedState(PickedState) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer
setPickingMode() - Method in class edu.uci.ics.jung.visualization.control.AbstractModalGraphMouse
setPickingMode() - Method in class edu.uci.ics.jung.visualization.control.EditingModalGraphMouse
setPredicate(Predicate) - Method in class edu.uci.ics.jung.utils.CollectionFactory.CollectionData
setPredicate(Collection, Predicate) - Static method in class edu.uci.ics.jung.utils.CollectionFactory
setPredsToInEdges(Map) - Method in class edu.uci.ics.jung.graph.impl.SimpleDirectedSparseVertex
  Sets this vertex's internal predecessor -> in-edge map to the specified map `predsToInEdges`.
setPredsToInEdges(Map) - Method in class edu.uci.ics.jung.graph.impl.SimpleSparseVertex
  Sets this vertex's internal predecessor -> in-edge map to the specified map `predsToInEdges`.
setPriorRankScore(Vertex, double) - Method in class edu.uci.ics.jung.algorithms.importance.RelativeAuthorityRanker
  Allows the user to specify a value to set for the prior rank score
setPriors(Set) - Method in class edu.uci.ics.jung.algorithms.importance.RelativeAuthorityRanker
  Specifies which vertices are root nodes (priors).
setRadius(double) - Method in class edu.uci.ics.jung.visualization.contrib.CircleLayout
setRadius(double) - Method in class edu.uci.ics.jung.visualization.subLayout.CircularSubLayout
setRadius(double) - Method in class edu.uci.ics.jung.visualization.transform.LensTransformer.PolarPoint
setRandomSeed(int) - Method in class edu.uci.ics.jung.algorithms.cluster.VoltageClusterer
setRankScore(Element, double) - Method in class edu.uci.ics.jung.algorithms.importance.AbstractRanker
setRankScore(Element, double, String) - Method in class edu.uci.ics.jung.algorithms.importance.HITS
setRankScore(Element, double) - Method in class edu.uci.ics.jung.algorithms.importance.HITS
setRankScore(Element, double, String) - Method in class edu.uci.ics.jung.algorithms.importance.HITSWithPriors
setRankScore(Element, double) - Method in class edu.uci.ics.jung.algorithms.importance.HITSWithPriors
setRankScore(Element, double) - Method in class edu.uci.ics.jung.algorithms.importance.MarkovCentrality
setRelaxerThreadSleepTime(long) - Method in class edu.uci.ics.jung.visualization.DefaultVisualizationModel
  Sets the relaxerThreadSleepTime.
setRelaxerThreadSleepTime(long) - Method in interface edu.uci.ics.jung.visualization.VisualizationModel
  Sets the relaxerThreadSleepTime.
setRemoveRankScoresOnFinalize(boolean) - Method in class edu.uci.ics.jung.algorithms.importance.AbstractRanker
  Instructs the ranker whether or not it should remove the rank scores from the nodes (or edges) once the ranks have been computed.
setRenderer(Renderer) - Method in class edu.uci.ics.jung.visualization.BirdsEyeVisualizationViewer
  Deprecated. UNTESTED.
setRenderer(Renderer) - Method in class edu.uci.ics.jung.visualization.GraphDraw
  Deprecated. Use getVisualizationViewer().setRenderer(r) instead.
setRenderer(Renderer) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer
  Sets the showing Renderer to be the input Renderer.
setRenderer(Renderer) - Method in class edu.uci.ics.jung.visualization.contrib.BirdsEyeGraphDraw
  Deprecated. A method to set the renderer.
setRendererPane(CellRendererPane) - Method in class edu.uci.ics.jung.visualization.PluggableRenderer
setRendererPane(CellRendererPane) - Method in class edu.uci.ics.jung.visualization.transform.shape.PluggableRendererDecorator
setRenderingHint(RenderingHints.Key, Object) - Method in class edu.uci.ics.jung.visualization.transform.shape.GraphicsDecorator
setRenderingHints(Map) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer
setRenderingHints(Map) - Method in class edu.uci.ics.jung.visualization.transform.shape.GraphicsDecorator
setRepulsionMultiplier(double) - Method in class edu.uci.ics.jung.visualization.FRLayout
setRepulsionRange(int) - Method in class edu.uci.ics.jung.visualization.SpringLayout
  Sets the node repulsion range (in drawing area units) for this instance.
setRoot(Graph) - Static method in class edu.uci.ics.jung.visualization.contrib.DAGLayout
  setRoot calculates the level of each vertex in the graph.
setRoot(Vertex) - Static method in class edu.uci.ics.jung.visualization.contrib.DAGLayout
  Set vertex v to be level 0.
setRootVertex(Vertex) - Method in class edu.uci.ics.jung.visualization.contrib.TreeLayout
setRotateEdgeLabels(boolean) - Method in class edu.uci.ics.jung.visualization.DefaultGraphLabelRenderer
setRotateEdgeLabels(boolean) - Method in interface edu.uci.ics.jung.visualization.GraphLabelRenderer
setScale(double, double) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer
  Deprecated. access via getViewTransformer method
setScale(double, double, Point2D) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer
  Deprecated. access via getViewTransformer method
setScale(double, double, Point2D) - Method in class edu.uci.ics.jung.visualization.transform.MutableAffineTransformer
  setter for the scale fires a PropertyChangeEvent with the AffineTransforms representing the previous and new values for scale and offset
setScale(double, double, Point2D) - Method in interface edu.uci.ics.jung.visualization.transform.MutableTransformer
setScale(double, double, Point2D) - Method in class edu.uci.ics.jung.visualization.transform.MutableTransformerDecorator
setScaler(ScalingControl) - Method in class edu.uci.ics.jung.visualization.control.ScalingGraphMousePlugin
setScreenDevice(JComponent) - Method in class edu.uci.ics.jung.visualization.PluggableRenderer
  The screen device is the JComponent on which the renderer will display the graph.
setScreenDevice(JComponent) - Method in class edu.uci.ics.jung.visualization.transform.shape.PluggableRendererDecorator
setScrollBarValues(Rectangle, Point2D, Point2D, Point2D, Point2D) - Method in class edu.uci.ics.jung.visualization.GraphZoomScrollPane
setSeed(int) - Method in class edu.uci.ics.jung.algorithms.cluster.KMeansClusterer
setSeed(long) - Method in class edu.uci.ics.jung.random.generators.EppsteinPowerLawGenerator
setSeed(long) - Method in class edu.uci.ics.jung.random.generators.ErdosRenyiGenerator
setSeed(long) - Method in class edu.uci.ics.jung.random.generators.SimpleRandomGenerator
setShapeImages(boolean) - Method in class samples.graph.VertexImageShaperDemo.DemoVertexImageShapeFunction
setShouldDrawDirectedArrows(boolean) - Method in class edu.uci.ics.jung.visualization.graphdraw.SettableRenderer
  Deprecated. Sets whether the system should draw arrows on directed edges.
setShouldDrawSelfLoops(boolean) - Method in class edu.uci.ics.jung.visualization.graphdraw.SettableRenderer
  Deprecated. Sets whether the system should draw self-loops.
setShouldDrawUndirectedArrows(boolean) - Method in class edu.uci.ics.jung.visualization.graphdraw.SettableRenderer
  Deprecated. Sets whether the system should draw arrows on directed edges.
setSizeFunction(VertexSizeFunction) - Method in class edu.uci.ics.jung.graph.decorators.AbstractVertexShapeFunction
setSizeFunction(VertexSizeFunction) - Method in interface edu.uci.ics.jung.graph.decorators.SettableVertexShapeFunction
setSizeKey(String) - Method in class samples.graph.BasicRenderer
setStretch(double) - Method in class edu.uci.ics.jung.visualization.SpringLayout
  Sets the stretch parameter for this instance.
setStringLabeller(StringLabeller) - Method in class edu.uci.ics.jung.graph.filters.impl.AlphabeticVertexFilter
  Sets the stringLabeller.
setStringLabeller(StringLabeller) - Method in class edu.uci.ics.jung.visualization.graphdraw.SettableRenderer
  Deprecated.
setStroke(Stroke) - Method in class edu.uci.ics.jung.visualization.transform.shape.GraphicsDecorator
setSuccsToOutEdges(Map) - Method in class edu.uci.ics.jung.graph.impl.SimpleDirectedSparseVertex
  Sets this vertex's internal successor -> out-edge map to the specified map `succsToOutEdges`.
setSuccsToOutEdges(Map) - Method in class edu.uci.ics.jung.graph.impl.SimpleSparseVertex
  Sets this vertex's internal successor -> out-edge map to the specified map `succsToOutEdges`.
setTextCallback(StatusCallback) - Method in class edu.uci.ics.jung.visualization.DefaultVisualizationModel
setTextCallback(StatusCallback) - Method in interface edu.uci.ics.jung.visualization.VisualizationModel
  set a callback to be called during the relaxer iteration
setTextCallback(StatusCallback) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer
  convenience pass-thru to model
setTheta(double) - Method in class edu.uci.ics.jung.visualization.transform.LensTransformer.PolarPoint
setThreshhold(String) - Method in class edu.uci.ics.jung.graph.filters.impl.AlphabeticVertexFilter
  Sets the threshhold.
setThreshold(double) - Method in class edu.uci.ics.jung.graph.filters.impl.NumericDecorationFilter
setToIdentity() - Method in class edu.uci.ics.jung.visualization.transform.LensTransformer
setToIdentity() - Method in class edu.uci.ics.jung.visualization.transform.MutableAffineTransformer
setToIdentity() - Method in interface edu.uci.ics.jung.visualization.transform.MutableTransformer
setToIdentity() - Method in class edu.uci.ics.jung.visualization.transform.MutableTransformerDecorator
setToolTipFunction(ToolTipFunction) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer
setToolTipListener(VisualizationViewer.ToolTipListener) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer
  sets the tooltip listener to the user's defined implementation of ToolTipListener
setTransform(AffineTransform) - Method in class edu.uci.ics.jung.visualization.transform.AffineTransformer
setTransform(AffineTransform) - Method in class edu.uci.ics.jung.visualization.transform.shape.GraphicsDecorator
setTransformer(Transformer) - Method in class edu.uci.ics.jung.visualization.transform.shape.TransformingGraphics
setTransformer(Transformer) - Method in class edu.uci.ics.jung.visualization.transform.shape.TransformingPluggableRenderer
setTransformingMode() - Method in class edu.uci.ics.jung.visualization.control.AbstractModalGraphMouse
setTransformingMode() - Method in class edu.uci.ics.jung.visualization.control.EditingModalGraphMouse
setTranslate(double, double) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer
  Deprecated. access via getViewTransformer method
setTranslate(double, double) - Method in class edu.uci.ics.jung.visualization.transform.MutableAffineTransformer
  replace the Transform's translate x and y values with the passed values, leaving the scale values unchanged
setTranslate(double, double) - Method in interface edu.uci.ics.jung.visualization.transform.MutableTransformer
setTranslate(double, double) - Method in class edu.uci.ics.jung.visualization.transform.MutableTransformerDecorator
setUniqueLabels(boolean) - Method in class edu.uci.ics.jung.io.PajekNetReader
  Sets or clears the `unique_labels` boolean.
setUp() - Method in class edu.uci.ics.jung.algorithms.importance.RandomWalkSTBetweenness
setUseAuthorityForRanking(boolean) - Method in class edu.uci.ics.jung.algorithms.importance.HITS
  If `evaluate()` has not already been called, the user can override the type of importance.
setUseAuthorityForRanking(boolean) - Method in class edu.uci.ics.jung.algorithms.importance.HITSWithPriors
  If `evaluate()` has not already been called, the user can override the type of importance.
setUserDataFactory(UserDataFactory) - Static method in class edu.uci.ics.jung.utils.UserDataDelegate
setUserDatum(Object, Object, UserDataContainer.CopyAction) - Method in class edu.uci.ics.jung.graph.impl.AbstractHyperUnitBPG
  Deprecated.
setUserDatum(Object, Object, UserDataContainer.CopyAction) - Method in class edu.uci.ics.jung.graph.impl.HypergraphBPG
  Deprecated.
setUserDatum(Object, Object, UserDataContainer.CopyAction) - Method in class edu.uci.ics.jung.utils.DefaultUserData
  Changes the user-level information to the object.
setUserDatum(Object, Object, UserDataContainer.CopyAction) - Method in class edu.uci.ics.jung.utils.UnifiedUserData
  Changes the user-level information to the object.
setUserDatum(Object, Object, UserDataContainer.CopyAction) - Method in interface edu.uci.ics.jung.utils.UserDataContainer
  If key refers to an existing user datum in this object's repository, that datum is replaced by the specified datum.
setUserDatum(Object, Object, UserDataContainer.CopyAction) - Method in class edu.uci.ics.jung.utils.UserDataDelegate
setUserDefinedEdgeWeightKey(String) - Method in class edu.uci.ics.jung.algorithms.importance.AbstractRanker
  Allows the user to provide his own set of data instances as edge weights by giving the ranker the `UserDatum` key where those instances can be found.
setValue(Number, UserDataContainer) - Method in class edu.uci.ics.jung.graph.decorators.NumericDecorator
  Sets the value for a given graph/vertex/edge
setValue(int) - Method in interface edu.uci.ics.jung.graph.filters.LevelFilter
setValue(int) - Method in class edu.uci.ics.jung.graph.filters.impl.WeightedEdgeGraphFilter
setValue(Object) - Method in class edu.uci.ics.jung.visualization.DefaultGraphLabelRenderer
  Sets the `String` object for the cell being rendered to `value`.
setVerboseMode(boolean) - Method in class edu.uci.ics.jung.io.HypergraphReader
setVertexBGColor(Color) - Method in class edu.uci.ics.jung.visualization.GraphDraw
  Deprecated. Modify this property via the renderer instead.
setVertexBGColor(Color) - Method in class edu.uci.ics.jung.visualization.graphdraw.SettableRenderer
  Deprecated. Manually sets the color of an unpicked Vertex's background (i.e. its field).
setVertexColorFunction(VertexColorFunction) - Method in class edu.uci.ics.jung.visualization.GraphDraw
  Deprecated. Modify this property via the renderer instead.
setVertexColorFunction(VertexColorFunction) - Method in class edu.uci.ics.jung.visualization.PluggableRenderer
  Deprecated. Use setVertexPaintFunction with a VertexPaintFunction if you can
setVertexColorFunction(VertexColorFunction) - Method in class edu.uci.ics.jung.visualization.graphdraw.SettableRenderer
  Deprecated. Finds the color of a vertex with a VertexColorFunction.
setVertexColorFunction(VertexColorFunction) - Method in class edu.uci.ics.jung.visualization.transform.shape.PluggableRendererDecorator
setVertexFontFunction(VertexFontFunction) - Method in class edu.uci.ics.jung.visualization.PluggableRenderer
  Sets the `VertexFontFunction` that specifies the font to use for drawing each vertex label.
setVertexFontFunction(VertexFontFunction) - Method in class edu.uci.ics.jung.visualization.transform.shape.PluggableRendererDecorator
setVertexForegroundColor(Color) - Method in class edu.uci.ics.jung.visualization.GraphDraw
  Deprecated. Modify this property via the renderer instead.
setVertexForegroundColor(Color) - Method in class edu.uci.ics.jung.visualization.graphdraw.SettableRenderer
  Deprecated. Manually sets the color of a Vertex's foreground (i.e. its text).
setVertexIconFunction(VertexIconFunction) - Method in class edu.uci.ics.jung.visualization.PluggableRenderer
setVertexIconFunction(VertexIconFunction) - Method in class edu.uci.ics.jung.visualization.transform.shape.PluggableRendererDecorator
setVertexIncludePredicate(Predicate) - Method in class edu.uci.ics.jung.visualization.PluggableRenderer
  Sets the `Predicate` that specifies whether each vertex should be drawn; only those vertices for which this predicate returns `true` will be drawn.
setVertexIncludePredicate(Predicate) - Method in class edu.uci.ics.jung.visualization.transform.shape.PluggableRendererDecorator
setVertexLabelCentering(boolean) - Method in class edu.uci.ics.jung.visualization.PluggableRenderer
  Specifies whether vertex labels are drawn centered on the vertex position (`true`) or offset to one side (`false`).
setVertexLabelCentering(boolean) - Method in class edu.uci.ics.jung.visualization.transform.shape.PluggableRendererDecorator
setVertexLocations(SettableVertexLocationFunction) - Method in class edu.uci.ics.jung.visualization.control.EditingGraphMousePlugin
  sets the vertex locations.
setVertexLocations(SettableVertexLocationFunction) - Method in class edu.uci.ics.jung.visualization.control.EditingModalGraphMouse
setVertexPaintFunction(VertexPaintFunction) - Method in class edu.uci.ics.jung.visualization.PluggableRenderer
  Sets the `VertexPaintFunction` which specifies the draw (border and text) and fill (interior) Paint for each vertex.
setVertexPaintFunction(VertexPaintFunction) - Method in class edu.uci.ics.jung.visualization.transform.shape.PluggableRendererDecorator
setVertexPickedColor(Color) - Method in class edu.uci.ics.jung.visualization.GraphDraw
  Deprecated. Modify this property via the renderer instead.
setVertexPickedColor(Color) - Method in class edu.uci.ics.jung.visualization.graphdraw.SettableRenderer
  Deprecated. Manually sets the color of a picked Vertex's background (i.e. its field).
setVertexShapeFunction(VertexShapeFunction) - Method in class edu.uci.ics.jung.visualization.PluggableRenderer
  Sets the `VertexShapeFunction`, which specifies the `Shape` for each vertex.
setVertexShapeFunction(VertexShapeFunction) - Method in class edu.uci.ics.jung.visualization.transform.shape.PluggableRendererDecorator
setVertexStringer(VertexStringer) - Method in class edu.uci.ics.jung.visualization.PluggableRenderer
  Sets the `VertexStringer` that specifies the label to draw for each vertex.
setVertexStringer(VertexStringer) - Method in class edu.uci.ics.jung.visualization.transform.shape.PluggableRendererDecorator
setVertexStrokeFunction(VertexStrokeFunction) - Method in class edu.uci.ics.jung.visualization.PluggableRenderer
  Sets the `VertexStrokeFunction` which specifies the `Stroke` to use when drawing each vertex border.
setVertexStrokeFunction(VertexStrokeFunction) - Method in class edu.uci.ics.jung.visualization.transform.shape.PluggableRendererDecorator
setViewCenter(Point2D) - Method in class edu.uci.ics.jung.visualization.transform.LensTransformer
setViewRadius(double) - Method in class edu.uci.ics.jung.visualization.transform.LensTransformer
setViewTransformer(MutableTransformer) - Method in class edu.uci.ics.jung.visualization.PluggableRenderer
setViewTransformer(MutableTransformer) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer
setViewTransformer(MutableTransformer) - Method in class edu.uci.ics.jung.visualization.transform.shape.PluggableRendererDecorator
setVisible(boolean) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer
setWeight(ArchetypeEdge, int) - Method in class edu.uci.ics.jung.graph.decorators.EdgeWeightLabeller
  Sets an edge to this weight.
setX(double) - Method in class edu.uci.ics.jung.visualization.Coordinates
  Sets the x value to be d;
setX(double) - Method in class samples.preview_new_graphdraw.Coordinates
  Sets the x value to be d;
setXORMode(Color) - Method in class edu.uci.ics.jung.visualization.transform.shape.GraphicsDecorator
setY(double) - Method in class edu.uci.ics.jung.visualization.Coordinates
  Sets the y value to be d;
setY(double) - Method in class samples.preview_new_graphdraw.Coordinates
  Sets the y value to be d;
setZoomAtMouse(boolean) - Method in class edu.uci.ics.jung.visualization.ZoomPanGraphMouse
setZoomAtMouse(boolean) - Method in class edu.uci.ics.jung.visualization.control.AbstractModalGraphMouse
setZoomAtMouse(boolean) - Method in class edu.uci.ics.jung.visualization.control.EditingModalGraphMouse
setZoomAtMouse(boolean) - Method in class edu.uci.ics.jung.visualization.control.ScalingGraphMousePlugin
shapeMap - Variable in class edu.uci.ics.jung.graph.decorators.VertexIconAndShapeFunction
shear(double, double, Point2D) - Method in class edu.uci.ics.jung.visualization.transform.MutableAffineTransformer
  shears the transform by passed parameters
shear(double, double, Point2D) - Method in interface edu.uci.ics.jung.visualization.transform.MutableTransformer
shear(double, double, Point2D) - Method in class edu.uci.ics.jung.visualization.transform.MutableTransformerDecorator
shear(double, double) - Method in class edu.uci.ics.jung.visualization.transform.shape.GraphicsDecorator
shearingPlugin - Variable in class edu.uci.ics.jung.visualization.control.AbstractModalGraphMouse
shearingPlugin - Variable in class edu.uci.ics.jung.visualization.control.EditingModalGraphMouse
shouldAddEdge(Vertex, Set, Collection) - Method in class edu.uci.ics.jung.algorithms.blockmodel.GraphCollapser
  Overridable method checks whether an edge representing the given set of edges should be created.
shouldCheckEdgeDistance() - Method in class samples.preview_new_graphdraw.impl.GraphLayoutPanelMouseListener.BothEdgeAndVertexPolicy
shouldCheckEdgeDistance() - Method in class samples.preview_new_graphdraw.impl.GraphLayoutPanelMouseListener.EdgeAndVertexPolicy
shouldCheckEdgeDistance() - Method in class samples.preview_new_graphdraw.impl.GraphLayoutPanelMouseListener.EdgeEventPolicy
shouldCheckEdgeDistance() - Method in class samples.preview_new_graphdraw.impl.GraphLayoutPanelMouseListener.NoEventPolicy
shouldCheckEdgeDistance() - Method in class samples.preview_new_graphdraw.impl.GraphLayoutPanelMouseListener.VertexEventPolicy
shouldCheckVertexDistance() - Method in class samples.preview_new_graphdraw.impl.GraphLayoutPanelMouseListener.BothEdgeAndVertexPolicy
shouldCheckVertexDistance() - Method in class samples.preview_new_graphdraw.impl.GraphLayoutPanelMouseListener.EdgeAndVertexPolicy
shouldCheckVertexDistance() - Method in class samples.preview_new_graphdraw.impl.GraphLayoutPanelMouseListener.EdgeEventPolicy
shouldCheckVertexDistance() - Method in class samples.preview_new_graphdraw.impl.GraphLayoutPanelMouseListener.NoEventPolicy
shouldCheckVertexDistance() - Method in class samples.preview_new_graphdraw.impl.GraphLayoutPanelMouseListener.VertexEventPolicy
shouldCount(Indexer, Vertex, Vertex, Vertex) - Static method in class edu.uci.ics.jung.algorithms.metrics.TriadicCensus
  Make sure we have a canonical ordering: Returns true if u < w, or v < w < u and v doesn't link to w
showGrid(VisualizationViewer, boolean) - Method in class samples.graph.SatelliteViewDemo
showStatus() - Method in class edu.uci.ics.jung.visualization.GraphDraw
  Deprecated. Shows the status bar at bottom left
show_arrow - Variable in class samples.graph.PluggableRendererDemo
show_edge - Variable in class samples.graph.PluggableRendererDemo
show_vertex - Variable in class samples.graph.PluggableRendererDemo
similarColors - Variable in class samples.graph.ClusteringDemo
simple - Variable in class edu.uci.ics.jung.utils.TypedVertexGenerator
  if true, generated vertices won't support parallel edges
simpleLoop - Static variable in class edu.uci.ics.jung.graph.decorators.EdgeShape
  a convenience instance for other edge shapes to use for self-loop edges where parallel instances overlay each other
singleSourceShortestPath(ArchetypeVertex, Set, int) - Method in class edu.uci.ics.jung.algorithms.shortestpath.DijkstraDistance
  Implements Dijkstra's single-source shortest-path algorithm for weighted graphs.
size() - Method in class edu.uci.ics.jung.algorithms.cluster.ClusterSet
  the size of the cluster collection.
size() - Method in class edu.uci.ics.jung.statistics.Histogram
  Returns the number of points in the series.
size() - Method in class edu.uci.ics.jung.utils.MapBinaryHeap
  Returns the size of this heap.
size_diff - Variable in class edu.uci.ics.jung.graph.decorators.InterpolatingVertexSizeFunction
skewness() - Method in class edu.uci.ics.jung.statistics.Histogram
  Returns the skewness of the values accumulated in the histogram bins.
skewness() - Method in class edu.uci.ics.jung.statistics.StatisticalMoments
skip(BufferedReader, Predicate) - Method in class edu.uci.ics.jung.io.PajekNetReader
  Returns the first line read from `br` for which `p` returns `true`, or `null` if there is no such line.
sl_d - Variable in class edu.uci.ics.jung.utils.StringLabellerVertexMapper
sl_s - Variable in class edu.uci.ics.jung.utils.StringLabellerVertexMapper
sliders - Variable in class edu.uci.ics.jung.visualization.GraphDraw
  Deprecated.
smallNumber() - Static method in class edu.uci.ics.jung.utils.NumericalPrecision
  Returns the smallest number that the system can handle.
sort() - Method in class edu.uci.ics.jung.algorithms.cluster.ClusterSet
  Sorts the clusters by size.
sourceMap - Variable in class edu.uci.ics.jung.algorithms.shortestpath.DijkstraDistance
south - Variable in class edu.uci.ics.jung.visualization.GraphZoomScrollPane
square(Graph, MatrixElementOperations) - Static method in class edu.uci.ics.jung.algorithms.GraphMatrixOperations
  Returns the graph that corresponds to the square of the (weighted) adjacency matrix that the specified graph `g` encodes.
squareDistanceLineToPoint(Coordinates, Coordinates, double, double) - Static method in class samples.preview_new_graphdraw.CoordinateUtil
  Calculates the square of the distance from a segment running (x1, y1) to (x2, y2) to a point (x,y)
squaredError(double[], double[]) - Static method in class edu.uci.ics.jung.statistics.DiscreteDistribution
  Returns the squared difference between the two specified distributions, which must have the same number of elements.
stack - Variable in class edu.uci.ics.jung.algorithms.cluster.BicomponentClusterer
standardDeviation() - Method in class edu.uci.ics.jung.statistics.Histogram
  Returns the standard deviation of the values accumulated in the histogram bins.
standardDeviation() - Method in class edu.uci.ics.jung.statistics.StatisticalMoments
  Returns the standard deviation.
start() - Method in class edu.uci.ics.jung.visualization.DefaultVisualizationModel
  If the visualization runner is not yet running, kick it off.
start() - Method in interface edu.uci.ics.jung.visualization.VisualizationModel
  start the relaxer
start() - Method in class edu.uci.ics.jung.visualization.VisualizationViewer
  convenience pass-thru to the model
start() - Method in class samples.graph.AddNodeDemo
start() - Method in class samples.graph.ClusteringDemo
start() - Method in class samples.graph.PluggableRendererDemo
start() - Method in class samples.graph.RankingDemoDriver
start() - Method in class samples.graph.ShortestPathDemoDriver
start() - Method in class samples.graph.ShowLayouts
start() - Method in class samples.graph.southern.SouthernWomenApplet
start() - Method in class samples.preview_new_graphdraw.impl.crooked.CrookedRun
start() - Method in class samples.preview_new_graphdraw.iter.LocalGraphDraw
start - Variable in class samples.preview_new_graphdraw.iterablelayouts.InterpolatingIterableLayout
start - Variable in class samples.preview_new_graphdraw.iterablelayouts.WrappedIterableLayout
startElement(String, String, String, Attributes) - Method in class edu.uci.ics.jung.io.GraphMLFileHandler
startFunction() - Method in class samples.graph.PluggableRendererDemo
startIterations() - Method in class samples.preview_new_graphdraw.iter.LayoutIterator
startingLayout - Variable in class samples.preview_new_graphdraw.staticlayouts.IterableToStaticLayout
stateChanged(ChangeEvent) - Method in class edu.uci.ics.jung.visualization.GraphDraw.SliderChangeListener
  Deprecated.
stateChanged(ChangeEvent) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer
  In response to changes from the model, repaint the view, then fire an event to any listeners.
staticAnimation - Variable in class samples.preview_new_graphdraw.iter.LocalGraphDraw
statusCallback - Variable in class edu.uci.ics.jung.visualization.DefaultVisualizationModel
  a callback called during relaxer iteration
statusbar - Variable in class edu.uci.ics.jung.visualization.GraphDraw
  Deprecated.
stop() - Method in class edu.uci.ics.jung.visualization.DefaultVisualizationModel
  set a flag to stop the VisRunner relaxer thread
stop() - Method in class edu.uci.ics.jung.visualization.GraphDraw
  Deprecated. Use `getVisualizationViewer().stop()` instead.
stop() - Method in interface edu.uci.ics.jung.visualization.VisualizationModel
  Request that the relaxer be stopped.
stop() - Method in class edu.uci.ics.jung.visualization.VisualizationViewer
  convenience pass-thru to model
stop - Variable in class samples.preview_new_graphdraw.iter.LayoutIterator
stop() - Method in class samples.preview_new_graphdraw.iter.LocalGraphDraw
stopIterations() - Method in class samples.preview_new_graphdraw.iter.LayoutIterator
stretch - Variable in class edu.uci.ics.jung.visualization.SpringLayout
stroke - Variable in class edu.uci.ics.jung.graph.decorators.ConstantEdgeStrokeFunction
stroke - Variable in class edu.uci.ics.jung.graph.decorators.ConstantVertexStrokeFunction
subLayouts - Variable in class edu.uci.ics.jung.visualization.subLayout.SubLayoutDecorator
subdivide(Line2D, Line2D, Line2D) - Method in class edu.uci.ics.jung.visualization.PluggableRenderer
  divide a Line2D into 2 new Line2Ds that are returned in the passed left and right instances, if non-null
subtract(double) - Method in class edu.uci.ics.jung.utils.MutableDouble
  Decreases the `double`'s value by `value`.
subtract(double) - Method in class edu.uci.ics.jung.utils.MutableInteger
  Increases the `int`'s value by `value`.
support - Variable in class edu.uci.ics.jung.visualization.Lens
  Deprecated. support for property changes
supportsInvert() - Method in class samples.preview_new_graphdraw.transform.CrookedLineTransformer
  This method allows inversion, by doing nothing.
supportsInvert() - Method in class samples.preview_new_graphdraw.transform.FitOnScreenTransformer
supportsInvert() - Method in interface samples.preview_new_graphdraw.transform.LayoutTransformer
  Most functions should support invert.
supportsInvert() - Method in class samples.preview_new_graphdraw.transform.PipelineResizingTransformer
supportsInvert() - Method in class samples.preview_new_graphdraw.transform.SlightMarginTransformer
suspend() - Method in class edu.uci.ics.jung.visualization.DefaultVisualizationModel
  set a flag to suspend the relaxer thread
suspend() - Method in interface edu.uci.ics.jung.visualization.VisualizationModel
  suspend the relaxer
suspend() - Method in class edu.uci.ics.jung.visualization.VisualizationViewer
  convenience pass-thru to the model
switchLayout - Variable in class samples.graph.AddNodeDemo
symmetricKL(double[], double[]) - Static method in class edu.uci.ics.jung.statistics.DiscreteDistribution
  Returns `KullbackLeibler(dist, reference) + KullbackLeibler(reference, dist)`.

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