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## A

ALL_SINGLE_EVENTS - Static variable in interface edu.uci.ics.jung.graph.event.GraphEventType
AUTHORITY_KEY - Static variable in class edu.uci.ics.jung.algorithms.importance.HITS
AUTHORITY_KEY - Static variable in class edu.uci.ics.jung.algorithms.importance.HITSWithPriors
AbsoluteCrossoverScalingControl - class edu.uci.ics.jung.visualization.control.AbsoluteCrossoverScalingControl.
  scales to the absolute value passed as an argument.
AbsoluteCrossoverScalingControl() - Constructor for class edu.uci.ics.jung.visualization.control.AbsoluteCrossoverScalingControl
AbstractArchetypeEdge - class edu.uci.ics.jung.graph.impl.AbstractArchetypeEdge.
AbstractArchetypeEdge() - Constructor for class edu.uci.ics.jung.graph.impl.AbstractArchetypeEdge
AbstractArchetypeGraph - class edu.uci.ics.jung.graph.impl.AbstractArchetypeGraph.
AbstractArchetypeGraph() - Constructor for class edu.uci.ics.jung.graph.impl.AbstractArchetypeGraph
AbstractArchetypeGraph.Requirements - class edu.uci.ics.jung.graph.impl.AbstractArchetypeGraph.Requirements.
AbstractArchetypeGraph.Requirements() - Constructor for class edu.uci.ics.jung.graph.impl.AbstractArchetypeGraph.Requirements
AbstractArchetypeVertex - class edu.uci.ics.jung.graph.impl.AbstractArchetypeVertex.
AbstractArchetypeVertex() - Constructor for class edu.uci.ics.jung.graph.impl.AbstractArchetypeVertex
AbstractEdgePaintFunction - class edu.uci.ics.jung.graph.decorators.AbstractEdgePaintFunction.
  An implementation of `EdgePaintFunction` that is appropriate for edge shapes that are not filled, such as lines or curves.
AbstractEdgePaintFunction() - Constructor for class edu.uci.ics.jung.graph.decorators.AbstractEdgePaintFunction
AbstractEdgeShapeFunction - class edu.uci.ics.jung.graph.decorators.AbstractEdgeShapeFunction.
  An interface for decorators that return a `Shape` for a specified edge.
AbstractEdgeShapeFunction() - Constructor for class edu.uci.ics.jung.graph.decorators.AbstractEdgeShapeFunction
AbstractElement - class edu.uci.ics.jung.graph.impl.AbstractElement.
AbstractElement() - Constructor for class edu.uci.ics.jung.graph.impl.AbstractElement
AbstractGraphMousePlugin - class edu.uci.ics.jung.visualization.control.AbstractGraphMousePlugin.
  a base class for GraphMousePlugin instances.
AbstractGraphMousePlugin(int) - Constructor for class edu.uci.ics.jung.visualization.control.AbstractGraphMousePlugin
  create an instance with passed values
AbstractHyperUnitBPG - class edu.uci.ics.jung.graph.impl.AbstractHyperUnitBPG.
  Deprecated. As of version 1.7, JUNG now includes native versions of hypergraph classes.
AbstractHyperUnitBPG() - Constructor for class edu.uci.ics.jung.graph.impl.AbstractHyperUnitBPG
  Deprecated.
AbstractHyperedge - class edu.uci.ics.jung.graph.impl.AbstractHyperedge.
  This class provides a skeletal implementation of the `Hyperedge` interface to minimize the effort required to implement this interface.
AbstractHyperedge() - Constructor for class edu.uci.ics.jung.graph.impl.AbstractHyperedge
AbstractHypervertex - class edu.uci.ics.jung.graph.impl.AbstractHypervertex.
  This class provides a skeletal implementation of the `Hypervertex` interface to minimize the effort required to implement this interface.
AbstractHypervertex() - Constructor for class edu.uci.ics.jung.graph.impl.AbstractHypervertex
AbstractLayout - class edu.uci.ics.jung.visualization.AbstractLayout.
  Implements some of the dirty work of writing a layout algorithm, allowing the user to express their major intent more simply.
AbstractLayout(Graph) - Constructor for class edu.uci.ics.jung.visualization.AbstractLayout
  Constructor.
AbstractLayout - class samples.preview_new_graphdraw.AbstractLayout.
  This class is essentially a decorator: for each vertex or edge, it must return a VisVertex or VisEdge object.
AbstractLayout() - Constructor for class samples.preview_new_graphdraw.AbstractLayout
AbstractLensSupport - class edu.uci.ics.jung.visualization.transform.AbstractLensSupport.
  A class to make it easy to add an examining lens to a jung graph application.
AbstractLensSupport(VisualizationViewer, ModalGraphMouse) - Constructor for class edu.uci.ics.jung.visualization.transform.AbstractLensSupport
  create the base class, setting common members and creating a custom GraphMouse
AbstractLensSupport.Lens - class edu.uci.ics.jung.visualization.transform.AbstractLensSupport.Lens.
  the background for the hyperbolic projection
AbstractLensSupport.Lens(LensTransformer) - Constructor for class edu.uci.ics.jung.visualization.transform.AbstractLensSupport.Lens
AbstractLensSupport.LensControls - class edu.uci.ics.jung.visualization.transform.AbstractLensSupport.LensControls.
  the background for the hyperbolic projection
AbstractLensSupport.LensControls(LensTransformer) - Constructor for class edu.uci.ics.jung.visualization.transform.AbstractLensSupport.LensControls
AbstractModalGraphMouse - class edu.uci.ics.jung.visualization.control.AbstractModalGraphMouse.
  AbstractModalGraphMouse is a PluggableGraphMouse class that manages a collection of plugins for picking and transforming the graph.
AbstractModalGraphMouse() - Constructor for class edu.uci.ics.jung.visualization.control.AbstractModalGraphMouse
AbstractPickedState - class edu.uci.ics.jung.visualization.AbstractPickedState.
  An abstract class to support ItemEvents for PickedState
AbstractPickedState() - Constructor for class edu.uci.ics.jung.visualization.AbstractPickedState
AbstractPopupGraphMousePlugin - class edu.uci.ics.jung.visualization.control.AbstractPopupGraphMousePlugin.
AbstractPopupGraphMousePlugin() - Constructor for class edu.uci.ics.jung.visualization.control.AbstractPopupGraphMousePlugin
AbstractPopupGraphMousePlugin(int) - Constructor for class edu.uci.ics.jung.visualization.control.AbstractPopupGraphMousePlugin
AbstractRanker - class edu.uci.ics.jung.algorithms.importance.AbstractRanker.
  Abstract class for algorithms that rank nodes or edges by some "importance" metric.
AbstractRanker() - Constructor for class edu.uci.ics.jung.algorithms.importance.AbstractRanker
AbstractRenderer - class edu.uci.ics.jung.visualization.AbstractRenderer.
  This abstract class structures much of the annoying bits of Renderers, allowing the user to simply override the important methods and move on.
AbstractRenderer() - Constructor for class edu.uci.ics.jung.visualization.AbstractRenderer
AbstractSparseEdge - class edu.uci.ics.jung.graph.impl.AbstractSparseEdge.
  This class provides a skeletal implementation of the `Edge` interface to minimize the effort required to implement this interface.
AbstractSparseEdge(Vertex, Vertex) - Constructor for class edu.uci.ics.jung.graph.impl.AbstractSparseEdge
  Creates an edge connecting vertices `from` and `to`.
AbstractSparseGraph - class edu.uci.ics.jung.graph.impl.AbstractSparseGraph.
  This class provides a skeletal implementation of the `Graph` interface to minimize the effort required to implement this interface.
AbstractSparseGraph() - Constructor for class edu.uci.ics.jung.graph.impl.AbstractSparseGraph
  Creates an instance of a sparse graph.
AbstractSparseVertex - class edu.uci.ics.jung.graph.impl.AbstractSparseVertex.
  This class provides a skeletal implementation of the `Vertex` interface to minimize the effort required to implement this interface.
AbstractSparseVertex() - Constructor for class edu.uci.ics.jung.graph.impl.AbstractSparseVertex
  Creates a new instance of a vertex for inclusion in a sparse graph.
AbstractVertexMapper - class edu.uci.ics.jung.utils.AbstractVertexMapper.
  An abstract class based on `VertexMapper` that specifies a destination graph.
AbstractVertexMapper(ArchetypeGraph) - Constructor for class edu.uci.ics.jung.utils.AbstractVertexMapper
AbstractVertexShapeFunction - class edu.uci.ics.jung.graph.decorators.AbstractVertexShapeFunction.
AbstractVertexShapeFunction(VertexSizeFunction, VertexAspectRatioFunction) - Constructor for class edu.uci.ics.jung.graph.decorators.AbstractVertexShapeFunction
AbstractVertexShapeFunction() - Constructor for class edu.uci.ics.jung.graph.decorators.AbstractVertexShapeFunction
AddNodeDemo - class samples.graph.AddNodeDemo.
  Thanks to Brad Allen for an original inspiration for this.
AddNodeDemo() - Constructor for class samples.graph.AddNodeDemo
AffineTransformer - class edu.uci.ics.jung.visualization.transform.AffineTransformer.
  Provides methods to map points from one coordinate system to another, by delegating to a wrapped AffineTransform (uniform) and its inverse.
AffineTransformer() - Constructor for class edu.uci.ics.jung.visualization.transform.AffineTransformer
  create an instance that does not transform points
AffineTransformer(AffineTransform) - Constructor for class edu.uci.ics.jung.visualization.transform.AffineTransformer
  Create an instance with the supplied transform
AlphabeticVertexFilter - class edu.uci.ics.jung.graph.filters.impl.AlphabeticVertexFilter.
  A small example filter that accepts vertices that are alphabetically past the input value.
AlphabeticVertexFilter(String, StringLabeller, boolean) - Constructor for class edu.uci.ics.jung.graph.filters.impl.AlphabeticVertexFilter
AnimatedGraphDraw - class samples.preview_new_graphdraw.test.AnimatedGraphDraw.
AnimatedGraphDraw() - Constructor for class samples.preview_new_graphdraw.test.AnimatedGraphDraw
AnimatedPickingGraphMousePlugin - class edu.uci.ics.jung.visualization.control.AnimatedPickingGraphMousePlugin.
  AnimatedPickingGraphMousePlugin supports the picking of one Graph Vertex.
AnimatedPickingGraphMousePlugin() - Constructor for class edu.uci.ics.jung.visualization.control.AnimatedPickingGraphMousePlugin
  create an instance with default modifiers
AnimatedPickingGraphMousePlugin(int) - Constructor for class edu.uci.ics.jung.visualization.control.AnimatedPickingGraphMousePlugin
  create an instance, overriding the default modifiers
ArchetypeEdge - interface edu.uci.ics.jung.graph.ArchetypeEdge.
  A interface for edge implementations in generalized graphs.
ArchetypeGraph - interface edu.uci.ics.jung.graph.ArchetypeGraph.
  A generalized graph which consists of an `ArchetypeVertex` set and an `ArchetypeEdge` set.
ArchetypeVertex - interface edu.uci.ics.jung.graph.ArchetypeVertex.
  A interface for vertex implementations in generalized graphs.
Arrow - class edu.uci.ics.jung.visualization.contrib.Arrow.
  This pluggable utility paints either a "classic" or a "sleek" filled arrow on a given edge.
Arrow(String, int, int) - Constructor for class edu.uci.ics.jung.visualization.contrib.Arrow
ArrowFactory - class edu.uci.ics.jung.visualization.ArrowFactory.
  A utility class for creating arrowhead shapes.
ArrowFactory() - Constructor for class edu.uci.ics.jung.visualization.ArrowFactory
acceptEdge(Edge) - Method in class edu.uci.ics.jung.graph.filters.EdgePredicateFilter
acceptEdge(Edge) - Method in class edu.uci.ics.jung.graph.filters.GeneralEdgeAcceptFilter
  Determines whether the current edge should be accepted into the Graph.
acceptEdge(Edge) - Method in class edu.uci.ics.jung.graph.filters.impl.WeightedEdgeGraphFilter
acceptVertex(Vertex) - Method in class edu.uci.ics.jung.graph.filters.GeneralVertexAcceptFilter
acceptVertex(Vertex) - Method in class edu.uci.ics.jung.graph.filters.TrivialFilter
  Returns true for all vertices.
acceptVertex(Vertex) - Method in class edu.uci.ics.jung.graph.filters.VertexPredicateFilter
acceptVertex(Vertex) - Method in class edu.uci.ics.jung.graph.filters.impl.AlphabeticVertexFilter
  Passes the vertex if its StringLabeller value compares over (or under) the threshold.
acceptVertex(Vertex) - Method in class edu.uci.ics.jung.graph.filters.impl.DropSoloNodesFilter
acceptVertex(Vertex) - Method in class edu.uci.ics.jung.graph.filters.impl.NumericDecorationFilter
accumulate(double) - Method in class edu.uci.ics.jung.statistics.StatisticalMoments
  statistical moment accumulation up to order 4.
actionPerformed(ActionEvent) - Method in class samples.graph.PluggableRendererDemo
actionPerformed(ActionEvent) - Method in class samples.graph.ShowLayouts.GraphChooser
activate(boolean) - Method in class edu.uci.ics.jung.visualization.transform.AbstractLensSupport
activate() - Method in class edu.uci.ics.jung.visualization.transform.LayoutLensSupport
activate() - Method in interface edu.uci.ics.jung.visualization.transform.LensSupport
activate(boolean) - Method in interface edu.uci.ics.jung.visualization.transform.LensSupport
activate() - Method in class edu.uci.ics.jung.visualization.transform.shape.ViewLensSupport
add(Object) - Method in class edu.uci.ics.jung.graph.impl.AbstractArchetypeGraph.Requirements
add(Object) - Method in class edu.uci.ics.jung.utils.MapBinaryHeap
  Inserts `o` into this collection.
add(double) - Method in class edu.uci.ics.jung.utils.MutableDouble
  Increases the `double`'s value by `value`.
add(double) - Method in class edu.uci.ics.jung.utils.MutableInteger
  Increases the `int`'s value by `value`.
add(double, double) - Method in class edu.uci.ics.jung.visualization.Coordinates
  Increases the x and y values of this scalar by (x, y).
add(GraphMousePlugin) - Method in class edu.uci.ics.jung.visualization.control.PluggableGraphMouse
add(Icon) - Method in class samples.graph.VertexImageShaperDemo.LayeredIcon
add(Coordinates, double, double) - Static method in class samples.preview_new_graphdraw.CoordinateUtil
add(LayoutTransformer) - Method in class samples.preview_new_graphdraw.iter.TransformerPipeline
addAllNotInitializers(Collection, Collection) - Method in class edu.uci.ics.jung.graph.impl.AbstractArchetypeGraph
  Adds all the predicates in source to the list in target, except those that answer to isInitializationPredicate.
addBipartiteEdge(BipartiteEdge) - Method in class edu.uci.ics.jung.graph.impl.BipartiteGraph
  Adds a BipartiteEdge to the Graph.
addBottomControls(JPanel) - Method in class samples.graph.PluggableRendererDemo
addChangeListener(ChangeListener) - Method in interface edu.uci.ics.jung.utils.ChangeEventSupport
addChangeListener(ChangeListener) - Method in class edu.uci.ics.jung.utils.DefaultChangeEventSupport
addChangeListener(ChangeListener) - Method in class edu.uci.ics.jung.visualization.AbstractLayout
  Adds a `ChangeListener`.
addChangeListener(ChangeListener) - Method in class edu.uci.ics.jung.visualization.DefaultVisualizationModel
  Adds a `ChangeListener`.
addChangeListener(ChangeListener) - Method in class edu.uci.ics.jung.visualization.LayoutDecorator
addChangeListener(ChangeListener) - Method in class edu.uci.ics.jung.visualization.PersistentLayoutImpl
addChangeListener(ChangeListener) - Method in interface edu.uci.ics.jung.visualization.VisualizationModel
  Register `l` as a listeners to changes in the model.
addChangeListener(ChangeListener) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer
  Adds a `ChangeListener`.
addChangeListener(ChangeListener) - Method in class edu.uci.ics.jung.visualization.transform.MutableAffineTransformer
  Adds a `ChangeListener`.
addChangeListener(ChangeListener) - Method in class edu.uci.ics.jung.visualization.transform.MutableTransformerDecorator
addClickListener(ClickListener) - Method in class samples.preview_new_graphdraw.impl.GraphLayoutPanel
addCluster(Set) - Method in class edu.uci.ics.jung.algorithms.cluster.ClusterSet
  Adds a new cluster to the collection.
addCollection(Collection, Comparator, Predicate, boolean) - Static method in class edu.uci.ics.jung.utils.CollectionFactory
addCollection(Collection, Comparator) - Static method in class edu.uci.ics.jung.utils.CollectionFactory
addCollection(Collection, Predicate) - Static method in class edu.uci.ics.jung.utils.CollectionFactory
addCollection(Collection, Comparator, Predicate) - Static method in class edu.uci.ics.jung.utils.CollectionFactory
addDirectedVertices(Graph, int) - Static method in class edu.uci.ics.jung.utils.GraphUtils
  Deprecated. As of version 1.2, replaced by `GraphUtils.addVertices(edu.uci.ics.jung.graph.Graph, int)`.
addEdge(Graph, Vertex, Element, Vertex, NumberEdgeValue) - Method in class edu.uci.ics.jung.algorithms.transformation.FoldingTransformer
  Creates a new edge from `firstEnd` to `secondEnd` in `newGraph`.
addEdge(Edge) - Method in interface edu.uci.ics.jung.graph.Graph
  Adds `e` to this graph, and returns a reference to the added vertex.
addEdge(Hyperedge) - Method in interface edu.uci.ics.jung.graph.Hypergraph
  Adds `e` to this graph, and returns a reference to the added edge.
addEdge(Edge) - Method in class edu.uci.ics.jung.graph.impl.AbstractSparseGraph
addEdge(Edge) - Method in class edu.uci.ics.jung.graph.impl.BipartiteGraph
  Deprecated. Use addBipartiteEdge
addEdge(Hyperedge) - Method in class edu.uci.ics.jung.graph.impl.HypergraphBPG
  Deprecated. Adds a single edge to the graph
addEdge(Hyperedge) - Method in class edu.uci.ics.jung.graph.impl.SetHypergraph
addEdge(Edge) - Method in class edu.uci.ics.jung.graph.impl.SparseTree
addEdge(Graph, Vertex, Vertex) - Static method in class edu.uci.ics.jung.utils.GraphUtils
  Adds an appropriate edge between two vertices.
addEdgeSubset(ArchetypeGraph, Predicate) - Static method in class edu.uci.ics.jung.utils.PredicateUtils
  Creates an edge subset for `g` based on `p`, which will be maintained by the `g`'s `SubsetManager`.
addEdgeSubset(Predicate) - Method in class edu.uci.ics.jung.utils.SubsetManager
  Creates an edge subset based on `p`.
addEdges(Set) - Method in class edu.uci.ics.jung.graph.impl.HypergraphBPG
  Deprecated.
addEdges(Graph, Set) - Static method in class edu.uci.ics.jung.utils.GraphUtils
  Adds all edges in the specified set to `g`.
addEdges(Hypergraph, Set) - Static method in class edu.uci.ics.jung.utils.GraphUtils
  Adds all edges in the specified set to `g`.
addGraphMouseListener(GraphMouseListener) - Method in class edu.uci.ics.jung.visualization.GraphDraw
  Deprecated. Use getVisualizationViewer.addMouseListener( new MouseListenerTranslator(gel, vv));
addGraphMouseListener(GraphMouseListener) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer
  This is the interface for adding a mouse listener.
addGraph_internal(AbstractArchetypeGraph) - Method in class edu.uci.ics.jung.graph.impl.AbstractElement
  Attaches this vertex to the specified graph `g`.
addItemListener(ItemListener) - Method in class edu.uci.ics.jung.visualization.AbstractPickedState
addItemListener(ItemListener) - Method in class edu.uci.ics.jung.visualization.control.AbstractModalGraphMouse
  add a listener for mode changes
addItemListener(ItemListener) - Method in class edu.uci.ics.jung.visualization.control.EditingModalGraphMouse
  add a listener for mode changes
addListener(GraphEventListener, GraphEventType) - Method in interface edu.uci.ics.jung.graph.ArchetypeGraph
  Tells the graph to add gel as a listener for changes in the graph structure
addListener(GraphEventListener, GraphEventType) - Method in class edu.uci.ics.jung.graph.event.GraphListenerHandler
addListener(GraphEventListener, GraphEventType) - Method in class edu.uci.ics.jung.graph.impl.AbstractArchetypeGraph
addListener(PickEventListener) - Method in class edu.uci.ics.jung.visualization.MultiPickedState
  Deprecated. Use addItemListener
addListener(PickEventListener) - Method in interface edu.uci.ics.jung.visualization.PickedState
  Deprecated. Use addItemListener
addNeighbor_internal(Edge, Vertex) - Method in class edu.uci.ics.jung.graph.impl.AbstractSparseVertex
  Adds the specified edge `e` and vertex `v` to the internal data structures of this vertex.
addNeighbor_internal(Edge, Vertex) - Method in class edu.uci.ics.jung.graph.impl.DirectedSparseVertex
addNeighbor_internal(Edge, Vertex) - Method in class edu.uci.ics.jung.graph.impl.LeanSparseVertex
addNeighbor_internal(Edge, Vertex) - Method in class edu.uci.ics.jung.graph.impl.SimpleDirectedSparseVertex
addNeighbor_internal(Edge, Vertex) - Method in class edu.uci.ics.jung.graph.impl.SimpleSparseVertex
addNeighbor_internal(Edge, Vertex) - Method in class edu.uci.ics.jung.graph.impl.SimpleUndirectedSparseVertex
addNeighbor_internal(Edge, Vertex) - Method in class edu.uci.ics.jung.graph.impl.SparseVertex
addNeighbor_internal(Edge, Vertex) - Method in class edu.uci.ics.jung.graph.impl.UndirectedSparseVertex
addNotify() - Method in class edu.uci.ics.jung.visualization.BirdsEyeVisualizationViewer
  Deprecated. defers setting the perferred size until the component is live and the layout size is known Adds the mouse clicker at that time.
addPostRenderPaintable(VisualizationViewer.Paintable) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer
addPreRenderPaintable(VisualizationViewer.Paintable) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer
addRenderingHints(Map) - Method in class edu.uci.ics.jung.visualization.transform.shape.GraphicsDecorator
addSlider(LevelFilter, int, int, int) - Method in class edu.uci.ics.jung.visualization.GraphDraw
  Deprecated. Use the PluggableRenderer's vertex and edge visibility predicates instead. See the release notes for version 1.6 for more information.
addStaticFilter(Filter) - Method in class edu.uci.ics.jung.visualization.GraphDraw
  Deprecated. Use the PluggableRenderer's vertex and edge visibility predicates instead. See the release notes for version 1.6 for more information.
addSubLayout(SubLayout) - Method in class edu.uci.ics.jung.visualization.subLayout.SubLayoutDecorator
addToPipeline(LayoutTransformer) - Method in class samples.preview_new_graphdraw.iter.LocalGraphDraw
addToSelectionModifiers - Variable in class edu.uci.ics.jung.visualization.control.PickingGraphMousePlugin
  additional modifiers for the action of adding to an existing selection
addTool(JComponent) - Method in class edu.uci.ics.jung.visualization.GraphDraw
  Deprecated. Use the PluggableRenderer's vertex and edge visibility predicates instead. See the release notes for version 1.6 for more information.
addUndirectedVertices(Graph, int) - Static method in class edu.uci.ics.jung.utils.GraphUtils
  Deprecated. As of version 1.2, replaced by `GraphUtils.addVertices(edu.uci.ics.jung.graph.Graph, int)`.
addUserDatum(Object, Object, UserDataContainer.CopyAction) - Method in class edu.uci.ics.jung.graph.impl.AbstractHyperUnitBPG
  Deprecated.
addUserDatum(Object, Object, UserDataContainer.CopyAction) - Method in class edu.uci.ics.jung.graph.impl.HypergraphBPG
  Deprecated.
addUserDatum(Object, Object, UserDataContainer.CopyAction) - Method in class edu.uci.ics.jung.utils.DefaultUserData
  Adds user-level information to the node.
addUserDatum(Object, Object, UserDataContainer.CopyAction) - Method in class edu.uci.ics.jung.utils.UnifiedUserData
  Adds user-level information to the node.
addUserDatum(Object, Object, UserDataContainer.CopyAction) - Method in interface edu.uci.ics.jung.utils.UserDataContainer
  Adds the specified data with the specified key to this object's user data repository, with the specified CopyAction.
addUserDatum(Object, Object, UserDataContainer.CopyAction) - Method in class edu.uci.ics.jung.utils.UserDataDelegate
addVertex(Vertex) - Method in interface edu.uci.ics.jung.graph.Graph
  Adds `v` to this graph, and returns a reference to the added vertex.
addVertex(Hypervertex) - Method in interface edu.uci.ics.jung.graph.Hypergraph
  Adds `v` to this graph, and returns a reference to the added vertex.
addVertex(Vertex) - Method in class edu.uci.ics.jung.graph.impl.AbstractSparseGraph
addVertex(BipartiteVertex, BipartiteGraph.Choice) - Method in class edu.uci.ics.jung.graph.impl.BipartiteGraph
  Adds a single vertex to the graph in the specified partition.
addVertex(Vertex) - Method in class edu.uci.ics.jung.graph.impl.BipartiteGraph
  Deprecated. Use addBipartiteVertex
addVertex(Hypervertex) - Method in class edu.uci.ics.jung.graph.impl.HypergraphBPG
  Deprecated. Adds `v` to this graph.
addVertex(Hypervertex) - Method in class edu.uci.ics.jung.graph.impl.SetHypergraph
addVertexSubset(ArchetypeGraph, Predicate) - Static method in class edu.uci.ics.jung.utils.PredicateUtils
  Creates a vertex subset for `g` based on `p`, which will be maintained by the `g`'s `SubsetManager`.
addVertexSubset(Predicate) - Method in class edu.uci.ics.jung.utils.SubsetManager
  Creates a vertex subset based on `p`.
addVertices(Set) - Method in class edu.uci.ics.jung.graph.impl.HypergraphBPG
  Deprecated.
addVertices(Graph, int) - Static method in class edu.uci.ics.jung.utils.GraphUtils
  Adds `count` vertices into a graph.
addVertices(Graph, Set) - Static method in class edu.uci.ics.jung.utils.GraphUtils
  Adds all vertices in the specified set to `g`.
addVertices(Hypergraph, Set) - Static method in class edu.uci.ics.jung.utils.GraphUtils
  Adds all vertices in the specified set to `g`.
addVisEdge(Edge) - Method in class samples.preview_new_graphdraw.iter.UpdatableIterableLayout
  Creates and returns a default VisEdge based on `e`.
addVisEdge(Edge) - Method in class samples.preview_new_graphdraw.iterablelayouts.SpringLayout
addVisVertex(Vertex) - Method in class samples.preview_new_graphdraw.iter.UpdatableIterableLayout
  Creates and returns a default VisVertex based on `v`.
addVisVertex(Vertex) - Method in class samples.preview_new_graphdraw.iterablelayouts.SpringLayout
addX(double) - Method in class edu.uci.ics.jung.visualization.Coordinates
  Increases the x value by d.
addY(double) - Method in class edu.uci.ics.jung.visualization.Coordinates
  Increases the y value by d.
adjustForGravity() - Method in class edu.uci.ics.jung.visualization.contrib.KKLayout
  Shift all vertices so that the center of gravity is located at the center of the screen.
adjustForGravity() - Method in class edu.uci.ics.jung.visualization.contrib.KKLayoutInt
  Shift all vertices so that the center of gravity is located at the center of the screen.
adjustForGravity(Set) - Method in class samples.preview_new_graphdraw.iterablelayouts.KKLayout
  Shift all vertices so that the center of gravity is located at the center of the screen.
adjustSize(Dimension) - Method in class samples.preview_new_graphdraw.transform.CrookedLineTransformer
adjustSize(Dimension) - Method in class samples.preview_new_graphdraw.transform.FitOnScreenTransformer
adjustSize(Dimension) - Method in interface samples.preview_new_graphdraw.transform.LayoutTransformer
  Adjusts this transformer to be working in this size a space
adjustSize(Dimension) - Method in class samples.preview_new_graphdraw.transform.PipelineResizingTransformer
adjustSize(Dimension) - Method in class samples.preview_new_graphdraw.transform.SlightMarginTransformer
adjustSizes(Dimension) - Method in class samples.preview_new_graphdraw.iter.TransformerPipeline
advance() - Method in class samples.preview_new_graphdraw.iter.IterableLayout
  Copies the current layout into the retunrable layout, then moves the visualization one step forward (by calling calculate).
advance() - Method in class samples.preview_new_graphdraw.iterablelayouts.WrappedIterableLayout
advancePositions() - Method in class edu.uci.ics.jung.visualization.AbstractLayout
  Implementors must override this method in order to create a Layout.
advancePositions() - Method in class edu.uci.ics.jung.visualization.FRLayout
  Moves the iteration forward one notch, calculation attraction and repulsion between vertices and edges and cooling the temperature.
advancePositions() - Method in class edu.uci.ics.jung.visualization.FadingVertexLayout
  Deprecated. In addition to being a passthrough, this also advances the fade function by calling ``tick``
advancePositions() - Method in class edu.uci.ics.jung.visualization.ISOMLayout
  Advances the current positions of the graph elements.
advancePositions() - Method in interface edu.uci.ics.jung.visualization.Layout
  Advances an incremental visualization.
advancePositions() - Method in class edu.uci.ics.jung.visualization.LayoutDecorator
advancePositions() - Method in class edu.uci.ics.jung.visualization.SpringLayout
  Relaxation step.
advancePositions() - Method in class edu.uci.ics.jung.visualization.StaticLayout
advancePositions() - Method in class edu.uci.ics.jung.visualization.contrib.CircleLayout
  Do nothing.
advancePositions() - Method in class edu.uci.ics.jung.visualization.contrib.KKLayout
advancePositions() - Method in class edu.uci.ics.jung.visualization.contrib.KKLayoutInt
advancePositions() - Method in class edu.uci.ics.jung.visualization.contrib.TreeLayout
  ?
affineTransformer - Variable in class samples.graph.PluggableRendererDemo
aggregateConstraint(Vertex) - Method in class edu.uci.ics.jung.algorithms.metrics.StructuralHoles
  The aggregate constraint on `v`.
allFilters - Variable in class edu.uci.ics.jung.visualization.GraphDraw
  Deprecated.
angleBetween(Point2D, Point2D) - Method in class edu.uci.ics.jung.visualization.control.RotatingGraphMousePlugin
  Returns the angle between two vectors from the origin to points v1 and v2.
angleBetween(Coordinates, double, double) - Static method in class samples.preview_new_graphdraw.CoordinateUtil
animatedPickingPlugin - Variable in class edu.uci.ics.jung.visualization.control.AbstractModalGraphMouse
animatedPickingPlugin - Variable in class edu.uci.ics.jung.visualization.control.EditingModalGraphMouse
annotateEdge(GraphCollapser.CollapsedEdge, Collection) - Method in class edu.uci.ics.jung.algorithms.blockmodel.GraphCollapser
  Overridable method annotates the new collapsed edge with userdata from the original set.
annotateVertex(GraphCollapser.CollapsedVertex, Set) - Method in class edu.uci.ics.jung.algorithms.blockmodel.GraphCollapser
  Overridable method annotates the new collapsed vertex with userdata from the rootset.
append(Filter) - Method in class edu.uci.ics.jung.graph.filters.SerialFilter
  Adds a filter to the end of the sequence of filters.
applyFilter(Graph) - Method in class edu.uci.ics.jung.visualization.AbstractLayout
  Applies the filter to the current graph.
applyFilter(Graph) - Method in class edu.uci.ics.jung.visualization.FadingVertexLayout
  Deprecated. Tracks the changes in the set of visible vertices from the set of actual vertices.
applyFilter(Graph) - Method in interface edu.uci.ics.jung.visualization.Layout
  Sets this filtered graph to be the applicable graph.
applyFilter(Graph) - Method in class edu.uci.ics.jung.visualization.LayoutDecorator
applyFilter(Graph) - Method in class edu.uci.ics.jung.visualization.contrib.TreeLayout
areEquivalent(ArchetypeGraph, ArchetypeGraph) - Static method in class edu.uci.ics.jung.utils.GraphUtils
  Returns true if `g1` and `g2` have equivalent vertex and edge sets (that is, if each vertex and edge in `g1` has an equivalent in `g2`, and vice versa), and false otherwise.
arrow_placement_tolerance - Variable in class edu.uci.ics.jung.visualization.PluggableRenderer
asList - Variable in class edu.uci.ics.jung.io.BipartiteGraphReader
  If `true`, specifies that each line of input implicitly represents a list of edges, where the first token specifies one endpoint, and the subsequent tokens specify a sequence of opposite endpoints.
as_list - Variable in class edu.uci.ics.jung.io.HypergraphReader
  If `true`, specifies that each line of input implicitly represents a list of edges, where the first token specifies one endpoint, and the subsequent tokens specify a sequence of opposite endpoints.
aspectRatio - Variable in class edu.uci.ics.jung.visualization.Lens
  Deprecated. ratio of width to height
assemble(boolean) - Method in class edu.uci.ics.jung.graph.filters.UnassembledGraph
  Constructs a new graph based on the source graph.
assemble() - Method in class edu.uci.ics.jung.graph.filters.UnassembledGraph
assignDefaultEdgeTransitionWeights() - Method in class edu.uci.ics.jung.algorithms.importance.AbstractRanker
assignDefaultLabels(Set, int) - Method in class edu.uci.ics.jung.graph.decorators.StringLabeller
  Assigns textual labels to every vertex passed in.
assignDefaultLabels(Set, int) - Method in class edu.uci.ics.jung.graph.decorators.ToStringLabeller
  This method is not meaningful; it throws an IllegalArgumentException
assignToClusters(Map, Set) - Method in class edu.uci.ics.jung.algorithms.cluster.KMeansClusterer
  Assigns each object to the cluster whose centroid is closest to the object.
average() - Method in class edu.uci.ics.jung.statistics.Histogram
  Returns the average of the values accumulated in the histogram bins.
average() - Method in class edu.uci.ics.jung.statistics.StatisticalMoments
average(long[]) - Method in class edu.uci.ics.jung.visualization.DefaultVisualizationModel
  Returns the double average of a number of long values.
average(long[]) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer
  Returns the double average of a number of long values.
averageDistances(ArchetypeGraph, Distance) - Static method in class edu.uci.ics.jung.statistics.GraphStatistics
  For each vertex `v` in `graph`, calculates the average shortest path length from `v` to all other vertices in `graph` using the metric specified by `d`, and returns the results in a `Map` from vertices to `Double` values.
averageDistances(ArchetypeGraph) - Static method in class edu.uci.ics.jung.statistics.GraphStatistics
  For each vertex `v` in `g`, calculates the average shortest path length from `v` to all other vertices in `g`, ignoring edge weights.

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