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## C

CENTRALITY - Static variable in class edu.uci.ics.jung.algorithms.importance.BetweennessCentrality
CENTRALITY - Static variable in class edu.uci.ics.jung.algorithms.importance.RandomWalkBetweenness
CENTRALITY - Static variable in class edu.uci.ics.jung.algorithms.importance.RandomWalkSTBetweenness
CLASSA - Static variable in class edu.uci.ics.jung.graph.impl.BipartiteGraph
CLASSB - Static variable in class edu.uci.ics.jung.graph.impl.BipartiteGraph
CLASSIC - Static variable in class edu.uci.ics.jung.visualization.contrib.Arrow
CLONE - Static variable in class edu.uci.ics.jung.utils.UserData
  A CopyAction that clones UserData--that is, it uses the Java `clone()`call to clone the object.
ChangeEventSupport - interface edu.uci.ics.jung.utils.ChangeEventSupport.
CircleEdge - class samples.preview_new_graphdraw.test.CircleEdge.
CircleEdge(Edge, VisVertex, VisVertex) - Constructor for class samples.preview_new_graphdraw.test.CircleEdge
CircleLayout - class edu.uci.ics.jung.visualization.contrib.CircleLayout.
  Positions vertices equally spaced on a regular circle.
CircleLayout(Graph) - Constructor for class edu.uci.ics.jung.visualization.contrib.CircleLayout
CircleLayout - class samples.preview_new_graphdraw.staticlayouts.CircleLayout.
CircleLayout() - Constructor for class samples.preview_new_graphdraw.staticlayouts.CircleLayout
CircleLayout.CircleVertexData - class edu.uci.ics.jung.visualization.contrib.CircleLayout.CircleVertexData.
CircleLayout.CircleVertexData() - Constructor for class edu.uci.ics.jung.visualization.contrib.CircleLayout.CircleVertexData
CircleRenderer - class samples.preview_new_graphdraw.test.CircleRenderer.
CircleRenderer() - Constructor for class samples.preview_new_graphdraw.test.CircleRenderer
CircularSubLayout - class edu.uci.ics.jung.visualization.subLayout.CircularSubLayout.
  An implementation of SubLayout that places its collection of Vertices in a circle.
CircularSubLayout(Collection, double, Point2D) - Constructor for class edu.uci.ics.jung.visualization.subLayout.CircularSubLayout
  create an instance with passed values
ClickEvent - class samples.preview_new_graphdraw.event.ClickEvent.
ClickEvent(Object, Element, double, MouseEvent) - Constructor for class samples.preview_new_graphdraw.event.ClickEvent
ClickListener - interface samples.preview_new_graphdraw.event.ClickListener.
CliqueGraphPredicate - class edu.uci.ics.jung.graph.predicates.CliqueGraphPredicate.
  Returns true if this graph is a clique (that is, if each vertex in the graph is a neighbor of each other vertex; also known as a complete graph).
CliqueGraphPredicate() - Constructor for class edu.uci.ics.jung.graph.predicates.CliqueGraphPredicate
ClusterSet - class edu.uci.ics.jung.algorithms.cluster.ClusterSet.
  A data structure representing the clusters, connected set of vertices (or edges), in a graph.
ClusterSet(ArchetypeGraph) - Constructor for class edu.uci.ics.jung.algorithms.cluster.ClusterSet
  Creates a new instance.
ClusteringDemo - class samples.graph.ClusteringDemo.
  This simple app demonstrates how one can use our algorithms and visualization libraries in unison.
ClusteringDemo() - Constructor for class samples.graph.ClusteringDemo
CollectionFactory - class edu.uci.ics.jung.utils.CollectionFactory.
  Generates `Collection`s based on input `Collection` instances, optionally filtered and sorted according to specified parameters.
CollectionFactory() - Constructor for class edu.uci.ics.jung.utils.CollectionFactory
CollectionFactory.CollectionData - class edu.uci.ics.jung.utils.CollectionFactory.CollectionData.
CollectionFactory.CollectionData(Collection, Comparator, Predicate, boolean) - Constructor for class edu.uci.ics.jung.utils.CollectionFactory.CollectionData
CollectionHyperedge - class edu.uci.ics.jung.graph.impl.CollectionHyperedge.
  An implementation of `Hyperedge` that stores its collection of incident vertices internally as a `Collection`.
CollectionHyperedge() - Constructor for class edu.uci.ics.jung.graph.impl.CollectionHyperedge
CollectionHypervertex - class edu.uci.ics.jung.graph.impl.CollectionHypervertex.
CollectionHypervertex() - Constructor for class edu.uci.ics.jung.graph.impl.CollectionHypervertex
ConnectedGraphPredicate - class edu.uci.ics.jung.graph.predicates.ConnectedGraphPredicate.
ConnectedGraphPredicate() - Constructor for class edu.uci.ics.jung.graph.predicates.ConnectedGraphPredicate
ConstantDirectionalEdgeValue - class edu.uci.ics.jung.graph.decorators.ConstantDirectionalEdgeValue.
  Returns the constructor-specified value for each edge type.
ConstantDirectionalEdgeValue(double, double) - Constructor for class edu.uci.ics.jung.graph.decorators.ConstantDirectionalEdgeValue
ConstantEdgeColorFunction - class edu.uci.ics.jung.graph.decorators.ConstantEdgeColorFunction.
  Deprecated. Replaced by ConstantEdgePaintFunction.
ConstantEdgeColorFunction(Color) - Constructor for class edu.uci.ics.jung.graph.decorators.ConstantEdgeColorFunction
  Deprecated.
ConstantEdgeFontFunction - class edu.uci.ics.jung.graph.decorators.ConstantEdgeFontFunction.
ConstantEdgeFontFunction(Font) - Constructor for class edu.uci.ics.jung.graph.decorators.ConstantEdgeFontFunction
ConstantEdgePaintFunction - class edu.uci.ics.jung.graph.decorators.ConstantEdgePaintFunction.
  Provides the same `Paint` for any specified edge.
ConstantEdgePaintFunction(Paint) - Constructor for class edu.uci.ics.jung.graph.decorators.ConstantEdgePaintFunction
  Sets both draw and fill `Paint` instances to `paint`.
ConstantEdgePaintFunction(Paint, Paint) - Constructor for class edu.uci.ics.jung.graph.decorators.ConstantEdgePaintFunction
  Sets the drawing `Paint` to `draw_paint` and the filling `Paint` to `fill_paint`.
ConstantEdgeStringer - class edu.uci.ics.jung.graph.decorators.ConstantEdgeStringer.
  Returns the specified label for all edges.
ConstantEdgeStringer(String) - Constructor for class edu.uci.ics.jung.graph.decorators.ConstantEdgeStringer
ConstantEdgeStrokeFunction - class edu.uci.ics.jung.graph.decorators.ConstantEdgeStrokeFunction.
ConstantEdgeStrokeFunction(Stroke) - Constructor for class edu.uci.ics.jung.graph.decorators.ConstantEdgeStrokeFunction
ConstantEdgeStrokeFunction(float) - Constructor for class edu.uci.ics.jung.graph.decorators.ConstantEdgeStrokeFunction
ConstantEdgeValue - class edu.uci.ics.jung.graph.decorators.ConstantEdgeValue.
  Returns a constructor-specified constant value for each edge.
ConstantEdgeValue(double) - Constructor for class edu.uci.ics.jung.graph.decorators.ConstantEdgeValue
ConstantEdgeValue(Number) - Constructor for class edu.uci.ics.jung.graph.decorators.ConstantEdgeValue
ConstantVertexAspectRatioFunction - class edu.uci.ics.jung.graph.decorators.ConstantVertexAspectRatioFunction.
ConstantVertexAspectRatioFunction(float) - Constructor for class edu.uci.ics.jung.graph.decorators.ConstantVertexAspectRatioFunction
ConstantVertexColorFunction - class edu.uci.ics.jung.graph.decorators.ConstantVertexColorFunction.
ConstantVertexColorFunction(PickedInfo, Color, Color, Color) - Constructor for class edu.uci.ics.jung.graph.decorators.ConstantVertexColorFunction
ConstantVertexFontFunction - class edu.uci.ics.jung.graph.decorators.ConstantVertexFontFunction.
ConstantVertexFontFunction(Font) - Constructor for class edu.uci.ics.jung.graph.decorators.ConstantVertexFontFunction
ConstantVertexIconFunction - class edu.uci.ics.jung.graph.decorators.ConstantVertexIconFunction.
  Returns the specified label for all vertices.
ConstantVertexIconFunction() - Constructor for class edu.uci.ics.jung.graph.decorators.ConstantVertexIconFunction
ConstantVertexIconFunction(Icon) - Constructor for class edu.uci.ics.jung.graph.decorators.ConstantVertexIconFunction
ConstantVertexPaintFunction - class edu.uci.ics.jung.graph.decorators.ConstantVertexPaintFunction.
  Provides the same `Paint`(s) for any specified vertex.
ConstantVertexPaintFunction(Paint) - Constructor for class edu.uci.ics.jung.graph.decorators.ConstantVertexPaintFunction
  Sets both draw and fill `Paint` instances to `paint`.
ConstantVertexPaintFunction(Paint, Paint) - Constructor for class edu.uci.ics.jung.graph.decorators.ConstantVertexPaintFunction
  Sets the drawing `Paint` to `draw_paint` and the filling `Paint` to `fill_paint`.
ConstantVertexSizeFunction - class edu.uci.ics.jung.graph.decorators.ConstantVertexSizeFunction.
ConstantVertexSizeFunction(int) - Constructor for class edu.uci.ics.jung.graph.decorators.ConstantVertexSizeFunction
ConstantVertexStringer - class edu.uci.ics.jung.graph.decorators.ConstantVertexStringer.
  Returns the specified label for all vertices.
ConstantVertexStringer(String) - Constructor for class edu.uci.ics.jung.graph.decorators.ConstantVertexStringer
ConstantVertexStrokeFunction - class edu.uci.ics.jung.graph.decorators.ConstantVertexStrokeFunction.
ConstantVertexStrokeFunction(float) - Constructor for class edu.uci.ics.jung.graph.decorators.ConstantVertexStrokeFunction
ConstantVertexStrokeFunction(Stroke) - Constructor for class edu.uci.ics.jung.graph.decorators.ConstantVertexStrokeFunction
ConstraintViolationException - exception edu.uci.ics.jung.exceptions.ConstraintViolationException.
ConstraintViolationException(String, Predicate) - Constructor for class edu.uci.ics.jung.exceptions.ConstraintViolationException
ContainsUserDataKeyVertexPredicate - class edu.uci.ics.jung.graph.predicates.ContainsUserDataKeyVertexPredicate.
  Returns true iff the vertex contains the specified user data key.
ContainsUserDataKeyVertexPredicate(Object) - Constructor for class edu.uci.ics.jung.graph.predicates.ContainsUserDataKeyVertexPredicate
CoordinateUtil - class samples.preview_new_graphdraw.CoordinateUtil.
CoordinateUtil() - Constructor for class samples.preview_new_graphdraw.CoordinateUtil
CoordinateUtil.Line - class samples.preview_new_graphdraw.CoordinateUtil.Line.
  A class which represents a geometric line.
CoordinateUtil.Line(Coordinates, Coordinates) - Constructor for class samples.preview_new_graphdraw.CoordinateUtil.Line
CoordinateUtil.Line(double, double) - Constructor for class samples.preview_new_graphdraw.CoordinateUtil.Line
Coordinates - class edu.uci.ics.jung.visualization.Coordinates.
  Stores coordinates (X,Y) for vertices being visualized.
Coordinates() - Constructor for class edu.uci.ics.jung.visualization.Coordinates
Coordinates(double, double) - Constructor for class edu.uci.ics.jung.visualization.Coordinates
Coordinates(Coordinates) - Constructor for class edu.uci.ics.jung.visualization.Coordinates
  Initializes this coordinate to the value of the passed-in coordinate.
Coordinates - class samples.preview_new_graphdraw.Coordinates.
  Stores coordinates (X,Y) for vertices being visualized.
Coordinates(double, double) - Constructor for class samples.preview_new_graphdraw.Coordinates
Coordinates(Coordinates) - Constructor for class samples.preview_new_graphdraw.Coordinates
  Initializes this coordinate to the value of the passed-in coordinate.
CopyVertexMapper - class edu.uci.ics.jung.utils.CopyVertexMapper.
  A `VertexMapper` implementation that respects the vertex equality reflected by `ArchetypeVertex.getEqualVertex`.
CopyVertexMapper(ArchetypeGraph) - Constructor for class edu.uci.ics.jung.utils.CopyVertexMapper
CrookedLineTransformer - class samples.preview_new_graphdraw.transform.CrookedLineTransformer.
CrookedLineTransformer() - Constructor for class samples.preview_new_graphdraw.transform.CrookedLineTransformer
CrookedRenderer - class samples.preview_new_graphdraw.impl.crooked.CrookedRenderer.
CrookedRenderer() - Constructor for class samples.preview_new_graphdraw.impl.crooked.CrookedRenderer
CrookedRun - class samples.preview_new_graphdraw.impl.crooked.CrookedRun.
CrookedRun() - Constructor for class samples.preview_new_graphdraw.impl.crooked.CrookedRun
CrookedRun.Selecter - class samples.preview_new_graphdraw.impl.crooked.CrookedRun.Selecter.
CrookedRun.Selecter() - Constructor for class samples.preview_new_graphdraw.impl.crooked.CrookedRun.Selecter
CrookedSpringLayout - class samples.preview_new_graphdraw.impl.crooked.CrookedSpringLayout.
CrookedSpringLayout() - Constructor for class samples.preview_new_graphdraw.impl.crooked.CrookedSpringLayout
CrookedSpringLayout.CrookedSpringEdge - class samples.preview_new_graphdraw.impl.crooked.CrookedSpringLayout.CrookedSpringEdge.
CrookedSpringLayout.CrookedSpringEdge(Edge, VisVertex, VisVertex) - Constructor for class samples.preview_new_graphdraw.impl.crooked.CrookedSpringLayout.CrookedSpringEdge
CrossoverScalingControl - class edu.uci.ics.jung.visualization.control.CrossoverScalingControl.
  A scaling control that has a crossover point.
CrossoverScalingControl() - Constructor for class edu.uci.ics.jung.visualization.control.CrossoverScalingControl
c1 - Variable in class edu.uci.ics.jung.graph.decorators.GradientEdgePaintFunction
c2 - Variable in class edu.uci.ics.jung.graph.decorators.GradientEdgePaintFunction
cached - Variable in class edu.uci.ics.jung.algorithms.shortestpath.DijkstraDistance
calcAttraction(Edge) - Method in class edu.uci.ics.jung.visualization.FRLayout
calcEdgeLength(SpringLayout.SpringEdgeData, SpringLayout.LengthFunction) - Method in class edu.uci.ics.jung.visualization.SpringLayout
calcMidpoint() - Method in class samples.preview_new_graphdraw.impl.crooked.CrookedSpringLayout.CrookedSpringEdge
calcPositions(Vertex) - Method in class edu.uci.ics.jung.visualization.FRLayout
calcRepulsion(Vertex) - Method in class edu.uci.ics.jung.visualization.FRLayout
calculate() - Method in class samples.preview_new_graphdraw.iter.IterableLayout
  Transforms currentLayout according to current layout algorithm.
calculate() - Method in class samples.preview_new_graphdraw.iterablelayouts.InterpolatingIterableLayout
calculate() - Method in class samples.preview_new_graphdraw.iterablelayouts.KKLayout
calculate() - Method in class samples.preview_new_graphdraw.iterablelayouts.SpringLayout
  Relaxation step.
calculate() - Method in class samples.preview_new_graphdraw.iterablelayouts.UnmovingIterableLayout
calculate() - Method in class samples.preview_new_graphdraw.iterablelayouts.WrappedIterableLayout
calculateRepulsion() - Method in class edu.uci.ics.jung.visualization.SpringLayout
calculateRepulsion(Set) - Method in class samples.preview_new_graphdraw.iterablelayouts.SpringLayout
calculateVoltages(Graph, Set, Set) - Method in class edu.uci.ics.jung.algorithms.importance.VoltageRanker
  Calculates the voltages for `g` based on assigning each of the vertices in `source` a voltage of 1 V.
calculateVoltages(Graph, Map, Set) - Method in class edu.uci.ics.jung.algorithms.importance.VoltageRanker
  Calculates the voltages for `g` based on the specified source and sink vertex sets.
calculateVoltages(Vertex, Vertex) - Method in class edu.uci.ics.jung.algorithms.importance.VoltageRanker
  Calculates an approximation of the solution of the Kirchhoff equations for voltage, given that `source` supplies 1 V and `target` is tied to ground (O V).
callBack(String) - Method in class edu.uci.ics.jung.visualization.GraphDraw
  Deprecated.
callBack(String) - Method in interface edu.uci.ics.jung.visualization.StatusCallback
canpossiblycompare(Vertex, Vertex) - Method in class edu.uci.ics.jung.algorithms.blockmodel.StructurallyEquivalent
  This is a space for optimizations.
cartesianToPolar(Point2D) - Method in class edu.uci.ics.jung.visualization.transform.LensTransformer
  Returns the result of converting `point` to polar coordinates.
cartesianToPolar(double, double) - Method in class edu.uci.ics.jung.visualization.transform.LensTransformer
  Returns the result of converting `(x, y)` to polar coordinates.
ceiling - Variable in class edu.uci.ics.jung.visualization.control.LensMagnificationGraphMousePlugin
center - Variable in class edu.uci.ics.jung.visualization.subLayout.CircularSubLayout
centerVertexLabel - Variable in class edu.uci.ics.jung.visualization.PluggableRenderer
changeEvent - Variable in class edu.uci.ics.jung.utils.DefaultChangeEventSupport
  Only one `ChangeEvent` is needed instance since the event's only state is the source property.
changeListener - Variable in class edu.uci.ics.jung.visualization.DefaultVisualizationModel
changeSupport - Variable in class edu.uci.ics.jung.visualization.AbstractLayout
changeSupport - Variable in class edu.uci.ics.jung.visualization.LayoutDecorator
changeSupport - Variable in class edu.uci.ics.jung.visualization.PersistentLayoutImpl
changeSupport - Variable in class edu.uci.ics.jung.visualization.VisualizationViewer
changeSupport - Variable in class edu.uci.ics.jung.visualization.transform.MutableAffineTransformer
checkConstraints(Object, Collection) - Method in class edu.uci.ics.jung.graph.impl.AbstractArchetypeGraph
checkEquivalent(Graph) - Method in class edu.uci.ics.jung.algorithms.blockmodel.StructurallyEquivalent
  For each vertex pair v, v1 in G, checks whether v and v1 are fully equivalent: meaning that they connect to the exact same vertices.
checkEquivalent(Graph) - Method in class edu.uci.ics.jung.algorithms.blockmodel.StructurallyEquivalentII
  For each vertex pair v, v1 in G, checks whether v and v1 are fully equivalent: meaning that they connect to the exact same vertices.
checkGraphConstraints(KPartiteGraph) - Method in class edu.uci.ics.jung.algorithms.transformation.FoldingTransformer
  Checks for, and rejects, mixed-mode graphs, and sets the `undirected` class variable state.
checkLegality(Element) - Method in class edu.uci.ics.jung.algorithms.cluster.ClusterSet
checkLengths(double[], double[]) - Static method in class edu.uci.ics.jung.statistics.DiscreteDistribution
  Throws an `IllegalArgumentException` if the two arrays are not of the same length.
checkModifiers(MouseEvent) - Method in class edu.uci.ics.jung.visualization.control.AbstractGraphMousePlugin
  check the mouse event modifiers against the instance member modifiers.
checkModifiers(MouseEvent) - Method in class edu.uci.ics.jung.visualization.control.EditingGraphMousePlugin
  overrided to be more flexible, and pass events with key combinations.
checkModifiers(MouseEvent) - Method in class edu.uci.ics.jung.visualization.control.GraphMouseAdapter
checkModifiers(MouseEvent) - Method in interface edu.uci.ics.jung.visualization.control.GraphMousePlugin
  compare the set modifiers against those of the supplied event
checkModifiers(MouseEvent) - Method in class edu.uci.ics.jung.visualization.control.LensMagnificationGraphMousePlugin
  override to check equality with a mask
checkModifiers(MouseEvent) - Method in class edu.uci.ics.jung.visualization.control.ScalingGraphMousePlugin
checkOffscreenImage(Dimension) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer
  Ensure that, if doubleBuffering is enabled, the offscreen image buffer exists and is the correct size.
checkbounds(EmittedLayout, Dimension) - Method in class samples.preview_new_graphdraw.transform.FitOnScreenTransformer
cleanOriginal - Variable in class samples.preview_new_graphdraw.impl.GraphLayoutPanel
cleanup(Set, Object) - Static method in class edu.uci.ics.jung.utils.UserDataUtils
cleanup(Set, Object, Object) - Static method in class edu.uci.ics.jung.utils.UserDataUtils
cleanup(Set, Object, Object, Object) - Static method in class edu.uci.ics.jung.utils.UserDataUtils
cleanupReferences(Graph) - Method in class samples.preview_new_graphdraw.iter.UpdatableIterableLayout
  This OPTIONAL OPTIMIZATION allows the java garbage collector to work.
clear(ArchetypeGraph) - Method in class edu.uci.ics.jung.algorithms.cluster.VoltageClusterer
  Clears the voltage decoration values from the vertices of `g`.
clear() - Method in class edu.uci.ics.jung.graph.decorators.EdgeWeightLabeller
  Clears all weights stored by this decorator.
clear() - Method in class edu.uci.ics.jung.graph.decorators.StringLabeller
  Wipes the entire table.
clear(ArchetypeGraph) - Method in class edu.uci.ics.jung.graph.decorators.UserDatumNumberEdgeValue
  Removes this decoration from `g`.
clear(ArchetypeGraph) - Method in class edu.uci.ics.jung.graph.decorators.UserDatumNumberVertexValue
  Removes this decoration from `g`.
clear() - Static method in class edu.uci.ics.jung.utils.CollectionFactory
clear() - Method in class edu.uci.ics.jung.utils.MapBinaryHeap
clearPickedEdges() - Method in class edu.uci.ics.jung.visualization.MultiPickedState
clearPickedEdges() - Method in interface edu.uci.ics.jung.visualization.PickedState
  Clears the "picked" state from all edges.
clearPickedVertices() - Method in class edu.uci.ics.jung.visualization.MultiPickedState
clearPickedVertices() - Method in interface edu.uci.ics.jung.visualization.PickedState
  Clears the "picked" state from all vertices.
clearRect(int, int, int, int) - Method in class edu.uci.ics.jung.visualization.transform.shape.GraphicsDecorator
clickPolicy - Variable in class samples.preview_new_graphdraw.impl.GraphLayoutPanel
clip(Shape) - Method in class edu.uci.ics.jung.visualization.transform.shape.GraphicsDecorator
clipRect(int, int, int, int) - Method in class edu.uci.ics.jung.visualization.transform.shape.GraphicsDecorator
clone() - Method in class edu.uci.ics.jung.graph.impl.AbstractHyperUnitBPG
  Deprecated.
clone() - Method in class edu.uci.ics.jung.utils.DefaultUserData
  This class actually clones by removing the reference to the copyAction and userData
clone() - Method in class edu.uci.ics.jung.utils.UnifiedUserData
clone() - Method in class edu.uci.ics.jung.utils.UserData
clone() - Method in interface edu.uci.ics.jung.utils.UserDataContainer
clone() - Method in class edu.uci.ics.jung.utils.UserDataDelegate
close() - Method in class edu.uci.ics.jung.utils.StringInputStream
  Deprecated. Closes the Stringreader.
cluster(Map, int) - Method in class edu.uci.ics.jung.algorithms.cluster.KMeansClusterer
  Returns a `Collection` of clusters, where each cluster is represented as a `Map` of `Objects` to locations in d-dimensional space.
cluster(ArchetypeGraph, int) - Method in class edu.uci.ics.jung.algorithms.cluster.VoltageClusterer
  Clusters the vertices of `g` into `num_clusters` clusters, based on their connectivity.
clusterAndRecolor(SubLayoutDecorator, int, Color[], boolean) - Method in class samples.graph.ClusteringDemo
cluster_internal(ArchetypeGraph, ArchetypeVertex, int) - Method in class edu.uci.ics.jung.algorithms.cluster.VoltageClusterer
  Does the work of `getCommunity` and `cluster`.
clusteringCoefficients(ArchetypeGraph) - Static method in class edu.uci.ics.jung.statistics.GraphStatistics
  Returns a `Map` of vertices to their clustering coefficients.
codeToType - Static variable in class edu.uci.ics.jung.algorithms.metrics.TriadicCensus
  For debugging purposes, this is copied straight out of the paper which means that they refer to triad types 1-16.
collapseVerticesIntoSuperVertices(EquivalenceRelation, Map, MultiMap) - Method in class edu.uci.ics.jung.algorithms.blockmodel.GraphCollapser
  Internal method for collapsing a set of vertexes.
collection - Variable in class edu.uci.ics.jung.utils.CollectionFactory.CollectionData
collection_data - Static variable in class edu.uci.ics.jung.utils.CollectionFactory
comp - Variable in class edu.uci.ics.jung.utils.CollectionFactory.CollectionData
compare(Object, Object) - Method in class edu.uci.ics.jung.algorithms.shortestpath.DijkstraDistance.VertexComparator
compareTo(Object) - Method in class edu.uci.ics.jung.algorithms.importance.Ranking
  Compares two ranking based on the rank score.
compareTo(Object) - Method in class edu.uci.ics.jung.utils.MutableDouble
compareTo(Object) - Method in class edu.uci.ics.jung.utils.MutableInteger
componentHidden(ComponentEvent) - Method in class edu.uci.ics.jung.visualization.GraphZoomScrollPane.ResizeListener
componentResized(ComponentEvent) - Method in class edu.uci.ics.jung.visualization.GraphZoomScrollPane.ResizeListener
componentResized(ComponentEvent) - Method in class edu.uci.ics.jung.visualization.SpringLayout.SpringDimensionChecker
componentResized(ComponentEvent) - Method in class edu.uci.ics.jung.visualization.VisualizationViewer.VisualizationListener
  create a new offscreen image for the graph whenever the window is resied
componentResized(ComponentEvent) - Method in class edu.uci.ics.jung.visualization.transform.LensTransformer.ComponentListenerImpl
componentShown(ComponentEvent) - Method in class edu.uci.ics.jung.visualization.GraphZoomScrollPane.ResizeListener
computeBetweenness(Graph) - Method in class edu.uci.ics.jung.algorithms.importance.BetweennessCentrality
computeBetweenness() - Method in class edu.uci.ics.jung.algorithms.importance.RandomWalkBetweenness
computeBetweenness() - Method in class edu.uci.ics.jung.algorithms.importance.RandomWalkSTBetweenness
computeMeanFirstPassageMatrix(Graph, Object, DoubleMatrix1D) - Static method in class edu.uci.ics.jung.algorithms.GraphMatrixOperations
  Computes the all-pairs mean first passage time for the specified graph, given an existing stationary probability distribution.
computePathData(Edge, Edge) - Method in interface edu.uci.ics.jung.algorithms.MatrixElementOperations
  If either e1 or e2 is null, the Object reference returned should be null.
computePathData(Edge, Edge) - Method in class edu.uci.ics.jung.algorithms.RealMatrixElementOperations
computeSTBetweenness(Vertex, Vertex, Vertex) - Method in class edu.uci.ics.jung.algorithms.importance.RandomWalkSTBetweenness
computeVoltagePotentialMatrix(UndirectedGraph) - Static method in class edu.uci.ics.jung.algorithms.GraphMatrixOperations
  The idea here is based on the metaphor of an electric circuit.
computeWeightedPathsFromSource(Vertex, int) - Method in class edu.uci.ics.jung.algorithms.importance.WeightedNIPaths
concatenate(AffineTransform) - Method in class edu.uci.ics.jung.visualization.transform.MutableAffineTransformer
concatenate(AffineTransform) - Method in interface edu.uci.ics.jung.visualization.transform.MutableTransformer
concatenate(AffineTransform) - Method in class edu.uci.ics.jung.visualization.transform.MutableTransformerDecorator
connectEdge(Hyperedge) - Method in interface edu.uci.ics.jung.graph.Hypervertex
  Connects `he` to this hypervertex and vice versa.
connectEdge(Hyperedge) - Method in class edu.uci.ics.jung.graph.impl.AbstractHypervertex
connectEdge(Hyperedge) - Method in class edu.uci.ics.jung.graph.impl.HypervertexBPG
connectVertex(Hypervertex) - Method in interface edu.uci.ics.jung.graph.Hyperedge
  Connects `hv1` to this hyperedge and vice versa.
connectVertex(Hypervertex) - Method in class edu.uci.ics.jung.graph.impl.AbstractHyperedge
  Connects `hv1` to this edge and vice versa.
connectVertex(Hypervertex) - Method in class edu.uci.ics.jung.graph.impl.HyperedgeBPG
  Deprecated. Registers an additional vertex `hv3_x` onto this Edge.
constraint(Vertex) - Method in class edu.uci.ics.jung.algorithms.metrics.StructuralHoles
  Burt's constraint measure (equation 2.4, page 55 of Burt, 1992).
constraint - Variable in class edu.uci.ics.jung.exceptions.ConstraintViolationException
contains(Object) - Method in class edu.uci.ics.jung.utils.MapBinaryHeap
containsParallelEdges(Graph) - Static method in class edu.uci.ics.jung.utils.GraphProperties
  Checks to see whether the graphs contains parallel edges
containsSelfLoops(Graph) - Static method in class edu.uci.ics.jung.utils.GraphProperties
  Checks to see whether the graphs contains self-loops
containsUserDatumKey(Object) - Method in class edu.uci.ics.jung.graph.impl.AbstractHyperUnitBPG
  Deprecated.
containsUserDatumKey(Object) - Method in class edu.uci.ics.jung.utils.DefaultUserData
containsUserDatumKey(Object) - Method in class edu.uci.ics.jung.utils.UnifiedUserData
containsUserDatumKey(Object) - Method in interface edu.uci.ics.jung.utils.UserDataContainer
  Reports whether `key` is a key of this user data container.
containsUserDatumKey(Object) - Method in class edu.uci.ics.jung.utils.UserDataDelegate
control_offset_increment - Variable in class edu.uci.ics.jung.graph.decorators.AbstractEdgeShapeFunction
  Specifies how far apart to place the control points for edges being drawn in parallel.
convergence_threshold - Variable in class edu.uci.ics.jung.algorithms.cluster.KMeansClusterer
convergence_threshold - Variable in class edu.uci.ics.jung.algorithms.importance.VoltageRanker
converse_depth - Variable in class edu.uci.ics.jung.algorithms.cluster.BicomponentClusterer
convertVertices(Graph, Graph, boolean) - Static method in class edu.uci.ics.jung.algorithms.transformation.DirectionTransformer
  Puts a version of each vertex from `old` into `transformed`.
copy(ArchetypeGraph) - Method in interface edu.uci.ics.jung.graph.ArchetypeEdge
  Creates a copy of this edge in graph `g`.
copy() - Method in interface edu.uci.ics.jung.graph.ArchetypeGraph
  Performs a deep copy of the graph and its contents.
copy(ArchetypeGraph) - Method in interface edu.uci.ics.jung.graph.ArchetypeVertex
  Creates a copy of this vertex in graph `g`.
copy(ArchetypeGraph) - Method in class edu.uci.ics.jung.graph.impl.AbstractArchetypeEdge
copy() - Method in class edu.uci.ics.jung.graph.impl.AbstractArchetypeGraph
  Creates a replica of this graph.
copy(ArchetypeGraph) - Method in class edu.uci.ics.jung.graph.impl.AbstractArchetypeVertex
copy(ArchetypeGraph) - Method in class edu.uci.ics.jung.graph.impl.AbstractHyperedge
  Creates a copy of this edge in the specified graph `newGraph`, and copies this edge's user data to the new edge.
copy(ArchetypeGraph) - Method in class edu.uci.ics.jung.graph.impl.AbstractHypervertex
copy(ArchetypeGraph) - Method in class edu.uci.ics.jung.graph.impl.AbstractSparseEdge
  Creates a copy of this edge in the specified graph `newGraph`, and copies this edge's user data to the new edge.
copy(ArchetypeGraph) - Method in class edu.uci.ics.jung.graph.impl.AbstractSparseVertex
copy(ArchetypeGraph) - Method in class edu.uci.ics.jung.graph.impl.BipartiteEdge
copy(ArchetypeGraph) - Method in class edu.uci.ics.jung.graph.impl.BipartiteVertex
  Specialized copy function for copy FROM BipartiteGraph TO BipartiteGraph
copy(ArchetypeGraph) - Method in class edu.uci.ics.jung.graph.impl.HyperedgeBPG
  Deprecated.
copy() - Method in class edu.uci.ics.jung.graph.impl.HypergraphBPG
  Deprecated.
copy(ArchetypeGraph) - Method in class edu.uci.ics.jung.graph.impl.HypervertexBPG
copy(VisVertex, VisVertex) - Method in class samples.preview_new_graphdraw.VisEdge
  Creates a new `VisEdge` from the specified `VisVertex` instances and this instance's `Edge`.
copy() - Method in class samples.preview_new_graphdraw.VisVertex
  Creates a new visvertex with this same location
copy(VisVertex, VisVertex) - Method in class samples.preview_new_graphdraw.impl.crooked.CrookedSpringLayout.CrookedSpringEdge
copy(EmittedLayout, EmittedLayout) - Static method in class samples.preview_new_graphdraw.iter.GraphLayoutPanelUtils
  Copies a layout into a destination layout (whose values are cleared)
copy(EmittedLayout) - Static method in class samples.preview_new_graphdraw.iter.GraphLayoutPanelUtils
  Copies a layout into a new layout, which is returned.
copy(VisVertex, VisVertex) - Method in class samples.preview_new_graphdraw.test.CircleEdge
copyArea(int, int, int, int, int, int) - Method in class edu.uci.ics.jung.visualization.transform.shape.GraphicsDecorator
copyLabels(StringLabeller, StringLabeller) - Static method in class edu.uci.ics.jung.utils.GraphUtils
  Copies the labels of vertices from one StringLabeller to another.
copyValues(ArchetypeGraph, NumberVertexValue, NumberVertexValue) - Static method in class edu.uci.ics.jung.utils.GraphUtils
  Copies, for each vertex `v` in `g`, `source`'s value to `dest`.
copy_action - Variable in class edu.uci.ics.jung.algorithms.transformation.FoldingTransformer
copy_action - Variable in class edu.uci.ics.jung.graph.decorators.UserDatumNumberEdgeValue
copy_action - Variable in class edu.uci.ics.jung.graph.decorators.UserDatumNumberVertexValue
copy_action - Variable in class edu.uci.ics.jung.io.HypergraphReader
corner - Variable in class edu.uci.ics.jung.visualization.GraphZoomScrollPane
cosine(double[], double[]) - Static method in class edu.uci.ics.jung.statistics.DiscreteDistribution
  Returns the cosine distance between the two specified distributions, which must have the same number of elements.
count - Static variable in class edu.uci.ics.jung.algorithms.blockmodel.StructurallyEquivalent
count() - Method in class edu.uci.ics.jung.statistics.Histogram
  Returns the number of accumulated counts.
count() - Method in class edu.uci.ics.jung.statistics.StatisticalMoments
  Returns the number of accumulated counts.
create() - Method in class edu.uci.ics.jung.utils.TypedVertexGenerator
  Creates a vertex whose type is determined by the requirements specified in the constructor.
create() - Method in interface edu.uci.ics.jung.utils.VertexGenerator
create() - Method in class edu.uci.ics.jung.visualization.transform.shape.GraphicsDecorator
create(int, int, int, int) - Method in class edu.uci.ics.jung.visualization.transform.shape.GraphicsDecorator
create() - Method in class edu.uci.ics.jung.visualization.transform.shape.TransformingGraphics
createAddEdge(StringTokenizer, Vertex, boolean, Graph, Indexer, boolean) - Method in class edu.uci.ics.jung.io.PajekNetReader
createChainPlusIsolates(int, int) - Static method in class edu.uci.ics.jung.utils.TestGraphs
  Returns a graph consisting of a chain of `vertex_count - 1` vertices plus one isolated vertex.
createCollapsedVertex(Graph, Set) - Method in class edu.uci.ics.jung.algorithms.blockmodel.BipartiteGraphCollapser
  It must be the case that all members of rootSet are in the same partition.
createCollapsedVertex(Graph, Set) - Method in class edu.uci.ics.jung.algorithms.blockmodel.GraphCollapser
  Overridable method to create a single vertex representing a set of vertices in the graph.
createDirectedAcyclicGraph(int, int, double) - Static method in class edu.uci.ics.jung.utils.TestGraphs
  Creates a sample directed acyclic graph by generating several "layers", and connecting nodes (randomly) to nodes in earlier (but never later) layers.
createDirectedEdges(Graph, GraphCollapser.CollapsedVertex, Vertex, Set) - Method in class edu.uci.ics.jung.algorithms.blockmodel.GraphCollapser
  Overridable method to create a up to two directed edges that represents the data in its parameters.
createEdge(Map) - Method in class edu.uci.ics.jung.io.GraphMLFileHandler
createEdgesCorrespondingToMap(Graph, GraphCollapser.CollapsedVertex, MultiMap, Set) - Method in class edu.uci.ics.jung.algorithms.blockmodel.GraphCollapser
  INTERNAL METHOD
createEquivalenceClasses(Graph, Set) - Method in class edu.uci.ics.jung.algorithms.blockmodel.StructurallyEquivalent
  Takes in a Set of Pairs (as in the resutls of checkEquivalent) and massages into a Set of Sets, where each Set is an equivalence class.
createEquivalentClusterSet(Graph) - Method in class edu.uci.ics.jung.algorithms.cluster.ClusterSet
  Returns the corresponding cluster set in the other graph.
createEquivalentClusterSet(Graph) - Method in class edu.uci.ics.jung.algorithms.cluster.EdgeClusterSet
  Creates a new cluster set where each edge and cluster in the new cluster set correspond 1-to-1 with those in the original graph
createEquivalentClusterSet(Graph) - Method in class edu.uci.ics.jung.algorithms.cluster.VertexClusterSet
  Creates a new cluster set where each vertex and cluster in the new cluster set correspond 1-to-1 with those in the original graph
createGraph() - Method in class edu.uci.ics.jung.algorithms.transformation.FoldingTransformer
  Returns a base graph to use.
createGraph(Map) - Method in class edu.uci.ics.jung.io.GraphMLFileHandler
createHistogram(DoubleArrayList, double, int, double) - Static method in class edu.uci.ics.jung.statistics.GraphStatistics
  Creates a histogram from a sequence of doubles
createRecord(ArchetypeVertex, ArchetypeEdge, double) - Method in class edu.uci.ics.jung.algorithms.shortestpath.DijkstraDistance.SourceData
createRecord(ArchetypeVertex, ArchetypeEdge, double) - Method in class edu.uci.ics.jung.algorithms.shortestpath.DijkstraShortestPath.SourcePathData
createTestGraph(boolean) - Static method in class edu.uci.ics.jung.utils.TestGraphs
  Creates a small sample graph that can be used for testing purposes.
createUndirectedEdge(Graph, GraphCollapser.CollapsedVertex, Vertex, Set) - Method in class edu.uci.ics.jung.algorithms.blockmodel.BipartiteGraphCollapser
createUndirectedEdge(Graph, GraphCollapser.CollapsedVertex, Vertex, Set) - Method in class edu.uci.ics.jung.algorithms.blockmodel.GraphCollapser
  Overridable method to create a single undirected edge that represents the data in its parameters.
createVertex(Map) - Method in class edu.uci.ics.jung.io.GraphMLFileHandler
createVertexDegreeDiagonalMatrix(Graph) - Static method in class edu.uci.ics.jung.algorithms.GraphMatrixOperations
  Returns a diagonal matrix whose diagonal entries contain the degree for the corresponding node.
createVisEdge(Edge, VisVertex, VisVertex) - Method in class samples.preview_new_graphdraw.StaticLayout
createVisEdge(Edge, VisVertex, VisVertex) - Method in class samples.preview_new_graphdraw.impl.crooked.CrookedSpringLayout
createVisEdge(Edge, VisVertex, VisVertex) - Method in class samples.preview_new_graphdraw.iterablelayouts.SpringLayout
createVisEdges(Set) - Method in class samples.preview_new_graphdraw.StaticLayout
createVisVertex(Vertex) - Method in class samples.preview_new_graphdraw.StaticLayout
createVisVertex(VisVertex) - Method in class samples.preview_new_graphdraw.iterablelayouts.SpringLayout
createVisVertex(Vertex) - Method in class samples.preview_new_graphdraw.staticlayouts.CircleLayout
createVisVertex(Vertex) - Method in class samples.preview_new_graphdraw.staticlayouts.IterableFromStaticEmittedLayout
createVisVertex(Vertex) - Method in class samples.preview_new_graphdraw.staticlayouts.IterableToStaticLayout
createVisVertex(Vertex) - Method in class samples.preview_new_graphdraw.staticlayouts.RandomLayout
createVisVertex(Vertex) - Method in class samples.preview_new_graphdraw.staticlayouts.SimpleLayoutAlgorithm
createVisVertices(Set) - Method in class samples.preview_new_graphdraw.StaticLayout
crossover - Variable in class edu.uci.ics.jung.visualization.control.CrossoverScalingControl
  Point where scale crosses over from view to layout.
currentLayout - Variable in class samples.preview_new_graphdraw.iter.IterableLayout
cursor - Variable in class edu.uci.ics.jung.visualization.control.AbstractGraphMousePlugin
  the special cursor that plugins may display

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