bsocialv2: Analysis of Microbial Social Behavior in Bacterial Consortia
Provides an S4 class and methods for analyzing microbial social
behavior in bacterial consortia. Includes growth parameter extraction,
social behavior classification (cooperators/cheaters/neutrals),
diversity effect analysis, consortium assembly path finding, and
stability analysis via coefficient of variation. Methods are described
in Purswani et al. (2017) <doi:10.3389/fmicb.2017.00919>.
| Version: |
0.1.1 |
| Depends: |
R (≥ 4.0), methods |
| Imports: |
dplyr, ggplot2, grDevices, growthcurver, igraph, magrittr, reshape2, rlang, stats, tidyr, viridis |
| Suggests: |
readr, testthat (≥ 3.0.0), knitr, rmarkdown |
| Published: |
2026-04-13 |
| DOI: |
10.32614/CRAN.package.bsocialv2 (may not be active yet) |
| Author: |
Maria Garcia Toledo [aut],
Juan Emilio Martinez Manjon [aut, cre],
Jessica Purswani [aut],
Rocio Romero Zaliz [aut] |
| Maintainer: |
Juan Emilio Martinez Manjon <juanemartinez999 at hotmail.com> |
| BugReports: |
https://github.com/Juane99/bsocialv2/issues |
| License: |
MIT + file LICENSE |
| URL: |
https://github.com/Juane99/bsocialv2 |
| NeedsCompilation: |
no |
| Materials: |
README, NEWS |
| CRAN checks: |
bsocialv2 results |
Documentation:
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