CRAN Package Check Results for Package phangorn

Last updated on 2026-08-03 18:50:41 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.12.1 59.42 454.44 513.86 NOTE
r-devel-linux-x86_64-debian-gcc 2.12.1 42.11 323.76 365.87 NOTE
r-devel-linux-x86_64-fedora-clang 2.12.1 83.00 718.69 801.69 OK
r-devel-linux-x86_64-fedora-gcc 2.12.1 43.00 297.80 340.80 NOTE
r-devel-windows-x86_64 2.12.1 62.00 488.00 550.00 NOTE
r-patched-linux-x86_64 2.12.1 58.38 354.58 412.96 OK
r-release-linux-x86_64 2.12.1 56.13 354.79 410.92 OK
r-release-macos-arm64 2.12.1 12.00 86.00 98.00 OK
r-release-macos-x86_64 2.12.1 37.00 482.00 519.00 OK
r-release-windows-x86_64 2.12.1 65.00 397.00 462.00 OK
r-oldrel-macos-arm64 2.12.1 OK
r-oldrel-macos-x86_64 2.12.1 34.00 441.00 475.00 OK
r-oldrel-windows-x86_64 2.12.1 82.00 522.00 604.00 OK

Check Details

Version: 2.12.1
Check: R code for possible problems
Result: NOTE Found calls to structure() using deprecated special names: phangorn/R/bab.R (.Names: 3, .Dim: 2) phangorn/R/fitch64.R (.Dim: 1, .Names: 1) phangorn/R/phylo.R (.Dim: 2, .Names: 2) phangorn/R/splits.R (.Names: 1) '.Names' should be changed to 'names'. '.Dim' should be changed to 'dim'. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64

Version: 2.12.1
Check: for new files in some other directories
Result: NOTE Found the following files/directories: ‘~/tmp/scratch/Rtmp0dXomd’ ‘~/tmp/scratch/Rtmp0xw4ju’ ‘~/tmp/scratch/Rtmp1KpYFE’ ‘~/tmp/scratch/Rtmp27yIUB’ ‘~/tmp/scratch/Rtmp32SdSE’ ‘~/tmp/scratch/Rtmp3GVUhj’ ‘~/tmp/scratch/Rtmp3GsmEp’ ‘~/tmp/scratch/Rtmp3MiSOL’ ‘~/tmp/scratch/Rtmp3jHi3U’ ‘~/tmp/scratch/Rtmp4VIo2t’ ‘~/tmp/scratch/Rtmp4emiCP’ ‘~/tmp/scratch/Rtmp4igMdv’ ‘~/tmp/scratch/Rtmp4s5QAL’ ‘~/tmp/scratch/Rtmp5K5rOB’ ‘~/tmp/scratch/Rtmp5YhSbT’ ‘~/tmp/scratch/Rtmp5qTEYJ’ ‘~/tmp/scratch/Rtmp6WIPhG’ ‘~/tmp/scratch/Rtmp6hMDLD’ ‘~/tmp/scratch/Rtmp7LsWVB’ ‘~/tmp/scratch/Rtmp7jjWZa’ ‘~/tmp/scratch/Rtmp7lk4lq’ ‘~/tmp/scratch/Rtmp8Y8wi9’ ‘~/tmp/scratch/Rtmp912uJz’ ‘~/tmp/scratch/Rtmp9VQEo9’ ‘~/tmp/scratch/Rtmp9W1JWs’ ‘~/tmp/scratch/Rtmp9gtWGu’ ‘~/tmp/scratch/Rtmp9nGyjf’ ‘~/tmp/scratch/RtmpAI9UMO’ ‘~/tmp/scratch/RtmpAlZ6xo’ ‘~/tmp/scratch/RtmpAsDuX3’ ‘~/tmp/scratch/RtmpBWFwm3’ ‘~/tmp/scratch/RtmpC7r01F’ ‘~/tmp/scratch/RtmpDQVGzP’ ‘~/tmp/scratch/RtmpDlNMrO’ ‘~/tmp/scratch/RtmpDmbx6I’ ‘~/tmp/scratch/RtmpE3tPRw’ ‘~/tmp/scratch/RtmpEEkKbc’ ‘~/tmp/scratch/RtmpETCOso’ ‘~/tmp/scratch/RtmpEYC7rp’ ‘~/tmp/scratch/RtmpEaUJKB’ ‘~/tmp/scratch/RtmpEewaIj’ ‘~/tmp/scratch/RtmpEmfUJx’ ‘~/tmp/scratch/RtmpFHD3qm’ ‘~/tmp/scratch/RtmpFLl1SP’ ‘~/tmp/scratch/RtmpFcMjPI’ ‘~/tmp/scratch/RtmpG1eW5Z’ ‘~/tmp/scratch/RtmpGTX4ri’ ‘~/tmp/scratch/RtmpGcVVQS’ ‘~/tmp/scratch/RtmpGd4gs0’ ‘~/tmp/scratch/RtmpGdO1S2’ ‘~/tmp/scratch/RtmpHBwWB8’ ‘~/tmp/scratch/RtmpHU0GPZ’ ‘~/tmp/scratch/RtmpHYSTr0’ ‘~/tmp/scratch/RtmpHacXEC’ ‘~/tmp/scratch/RtmpHbB2vP’ ‘~/tmp/scratch/RtmpHihSMw’ ‘~/tmp/scratch/RtmpJ8P6NE’ ‘~/tmp/scratch/RtmpK7WBy7’ ‘~/tmp/scratch/RtmpKD3faO’ ‘~/tmp/scratch/RtmpKM2Khn’ ‘~/tmp/scratch/RtmpKXqZKI’ ‘~/tmp/scratch/RtmpKpw4mL’ ‘~/tmp/scratch/RtmpKzkUcg’ ‘~/tmp/scratch/RtmpLgTpYo’ ‘~/tmp/scratch/RtmpMJozwD’ ‘~/tmp/scratch/RtmpNUinfq’ ‘~/tmp/scratch/RtmpO2x8x6’ ‘~/tmp/scratch/RtmpOVqPnO’ ‘~/tmp/scratch/RtmpOdqc9Y’ ‘~/tmp/scratch/RtmpPMw23B’ ‘~/tmp/scratch/RtmpPbbQkw’ ‘~/tmp/scratch/RtmpPvpwMK’ ‘~/tmp/scratch/RtmpPyrOMG’ ‘~/tmp/scratch/RtmpQJaSZV’ ‘~/tmp/scratch/RtmpQPIRBh’ ‘~/tmp/scratch/RtmpQjnNOF’ ‘~/tmp/scratch/RtmpQnMKuG’ ‘~/tmp/scratch/RtmpR2rMfz’ ‘~/tmp/scratch/RtmpRl2RPX’ ‘~/tmp/scratch/RtmpS1OXWu’ ‘~/tmp/scratch/RtmpSCMNF1’ ‘~/tmp/scratch/RtmpSqtYj0’ ‘~/tmp/scratch/RtmpT105ot’ ‘~/tmp/scratch/RtmpTbupz2’ ‘~/tmp/scratch/RtmpTn0UJA’ ‘~/tmp/scratch/RtmpToK8zQ’ ‘~/tmp/scratch/RtmpTuxOih’ ‘~/tmp/scratch/RtmpUXnlgi’ ‘~/tmp/scratch/RtmpUZlslH’ ‘~/tmp/scratch/RtmpV7XQEE’ ‘~/tmp/scratch/RtmpVHLuvm’ ‘~/tmp/scratch/RtmpVHS2nE’ ‘~/tmp/scratch/RtmpVgeMs4’ ‘~/tmp/scratch/RtmpWJ5lXu’ ‘~/tmp/scratch/RtmpWzvvSk’ ‘~/tmp/scratch/RtmpX1Nwvf’ ‘~/tmp/scratch/RtmpXf9PjG’ ‘~/tmp/scratch/RtmpaG6eyN’ ‘~/tmp/scratch/RtmpaKMrwH’ ‘~/tmp/scratch/RtmpaOt2mR’ ‘~/tmp/scratch/RtmpaSUEA0’ ‘~/tmp/scratch/RtmpaaChYp’ ‘~/tmp/scratch/RtmpabEZC8’ ‘~/tmp/scratch/RtmpbLvAfx’ ‘~/tmp/scratch/RtmpbMrVzm’ ‘~/tmp/scratch/RtmpbnYgl1’ ‘~/tmp/scratch/RtmpcZiHwl’ ‘~/tmp/scratch/RtmpcjswuU’ ‘~/tmp/scratch/RtmpcyAkI0’ ‘~/tmp/scratch/RtmpdbrXU5’ ‘~/tmp/scratch/RtmpdftK3z’ ‘~/tmp/scratch/RtmpeQ6NpL’ ‘~/tmp/scratch/RtmpeQF365’ ‘~/tmp/scratch/RtmpeiQyfH’ ‘~/tmp/scratch/RtmpenaifC’ ‘~/tmp/scratch/Rtmpf42k9Z’ ‘~/tmp/scratch/RtmpfJlzmi’ ‘~/tmp/scratch/RtmpfPY8Od’ ‘~/tmp/scratch/RtmpfPpRbe’ ‘~/tmp/scratch/Rtmpfe4s4c’ ‘~/tmp/scratch/RtmphYoh6P’ ‘~/tmp/scratch/Rtmphgj45p’ ‘~/tmp/scratch/RtmpiAsXT8’ ‘~/tmp/scratch/RtmpiHNhAS’ ‘~/tmp/scratch/Rtmpigfirw’ ‘~/tmp/scratch/RtmpjSZWX7’ ‘~/tmp/scratch/RtmpjUuQzm’ ‘~/tmp/scratch/RtmpjkaNe3’ ‘~/tmp/scratch/RtmpkLsuQ4’ ‘~/tmp/scratch/RtmpkW4dby’ ‘~/tmp/scratch/RtmplbcehW’ ‘~/tmp/scratch/RtmpmYTNZ1’ ‘~/tmp/scratch/RtmpmxYHrw’ ‘~/tmp/scratch/Rtmpn6a4TK’ ‘~/tmp/scratch/RtmpoYjxXg’ ‘~/tmp/scratch/Rtmpoji2iK’ ‘~/tmp/scratch/RtmpompzwY’ ‘~/tmp/scratch/RtmppEguw5’ ‘~/tmp/scratch/RtmppfIQBH’ ‘~/tmp/scratch/RtmppkwaOT’ ‘~/tmp/scratch/RtmppvaLo8’ ‘~/tmp/scratch/RtmpqAmemt’ ‘~/tmp/scratch/RtmpqNSfhY’ ‘~/tmp/scratch/RtmpqqbzRD’ ‘~/tmp/scratch/RtmpqtwEjK’ ‘~/tmp/scratch/Rtmpr8qicl’ ‘~/tmp/scratch/RtmprGrkhZ’ ‘~/tmp/scratch/RtmprLfRsu’ ‘~/tmp/scratch/RtmprlZ3Gm’ ‘~/tmp/scratch/Rtmps7ozsQ’ ‘~/tmp/scratch/Rtmpt06DXW’ ‘~/tmp/scratch/Rtmpt5MgSs’ ‘~/tmp/scratch/RtmptuJ8Vf’ ‘~/tmp/scratch/RtmptyA0lX’ ‘~/tmp/scratch/Rtmpu87SI5’ ‘~/tmp/scratch/RtmpuZY6UJ’ ‘~/tmp/scratch/RtmpudxOfC’ ‘~/tmp/scratch/RtmpuiIlCh’ ‘~/tmp/scratch/RtmpuqtsPh’ ‘~/tmp/scratch/RtmpvC3MhM’ ‘~/tmp/scratch/RtmpvFIHtN’ ‘~/tmp/scratch/RtmpvYC6S2’ ‘~/tmp/scratch/RtmpvinjaT’ ‘~/tmp/scratch/RtmpvxYrZR’ ‘~/tmp/scratch/Rtmpw9KSMd’ ‘~/tmp/scratch/RtmpxQP1Xm’ ‘~/tmp/scratch/RtmpxShz4E’ ‘~/tmp/scratch/RtmpxjKhTO’ ‘~/tmp/scratch/Rtmpxw066f’ ‘~/tmp/scratch/RtmpyLphCl’ ‘~/tmp/scratch/Rtmpyg7DIg’ ‘~/tmp/scratch/Rtmpz3aBs3’ ‘~/tmp/scratch/RtmpzFdFVZ’ ‘~/tmp/scratch/RtmpzUuqfE’ ‘~/tmp/scratch/quarto-session6ef1ee4f0f210614’ ‘~/tmp/scratch/xvfb-run.0eq0Xt’ ‘~/tmp/scratch/xvfb-run.2kmyTC’ ‘~/tmp/scratch/xvfb-run.3ai85G’ ‘~/tmp/scratch/xvfb-run.4TjmFA’ ‘~/tmp/scratch/xvfb-run.5Zxii5’ ‘~/tmp/scratch/xvfb-run.7Lu0pZ’ ‘~/tmp/scratch/xvfb-run.7mJc8u’ ‘~/tmp/scratch/xvfb-run.7uN6oh’ ‘~/tmp/scratch/xvfb-run.8Z625U’ ‘~/tmp/scratch/xvfb-run.9p3lP8’ ‘~/tmp/scratch/xvfb-run.9qoxsw’ ‘~/tmp/scratch/xvfb-run.B7p3cb’ ‘~/tmp/scratch/xvfb-run.Byk0TM’ ‘~/tmp/scratch/xvfb-run.CCL077’ ‘~/tmp/scratch/xvfb-run.D5cav4’ ‘~/tmp/scratch/xvfb-run.DBpa7K’ ‘~/tmp/scratch/xvfb-run.DmDfEe’ ‘~/tmp/scratch/xvfb-run.ETrHkR’ ‘~/tmp/scratch/xvfb-run.FASROm’ ‘~/tmp/scratch/xvfb-run.GnWMyj’ ‘~/tmp/scratch/xvfb-run.GwORRD’ ‘~/tmp/scratch/xvfb-run.HHKhiN’ ‘~/tmp/scratch/xvfb-run.I8bIcZ’ ‘~/tmp/scratch/xvfb-run.IVxMRG’ ‘~/tmp/scratch/xvfb-run.J5Xc3x’ ‘~/tmp/scratch/xvfb-run.JD0e09’ ‘~/tmp/scratch/xvfb-run.JnToeN’ ‘~/tmp/scratch/xvfb-run.JyWAdK’ ‘~/tmp/scratch/xvfb-run.L4KVDv’ ‘~/tmp/scratch/xvfb-run.LxPOMp’ ‘~/tmp/scratch/xvfb-run.MsnYCW’ ‘~/tmp/scratch/xvfb-run.NEVTCf’ ‘~/tmp/scratch/xvfb-run.NHxgXe’ ‘~/tmp/scratch/xvfb-run.NgtFQf’ ‘~/tmp/scratch/xvfb-run.NhwA2E’ ‘~/tmp/scratch/xvfb-run.ObQi3i’ ‘~/tmp/scratch/xvfb-run.PlqCEN’ ‘~/tmp/scratch/xvfb-run.Pvnd4N’ ‘~/tmp/scratch/xvfb-run.QC87LN’ ‘~/tmp/scratch/xvfb-run.Qe3u0o’ ‘~/tmp/scratch/xvfb-run.QlGW9p’ ‘~/tmp/scratch/xvfb-run.St2hIF’ ‘~/tmp/scratch/xvfb-run.T4HEyJ’ ‘~/tmp/scratch/xvfb-run.UoQior’ ‘~/tmp/scratch/xvfb-run.VHV46y’ ‘~/tmp/scratch/xvfb-run.W275mK’ ‘~/tmp/scratch/xvfb-run.WfxWPe’ ‘~/tmp/scratch/xvfb-run.X3Rxxa’ ‘~/tmp/scratch/xvfb-run.YFaiDg’ ‘~/tmp/scratch/xvfb-run.ZA6li8’ ‘~/tmp/scratch/xvfb-run.bwutDC’ ‘~/tmp/scratch/xvfb-run.dOBvGS’ ‘~/tmp/scratch/xvfb-run.dtyryM’ ‘~/tmp/scratch/xvfb-run.e2YDwD’ ‘~/tmp/scratch/xvfb-run.emCdtq’ ‘~/tmp/scratch/xvfb-run.en5pFF’ ‘~/tmp/scratch/xvfb-run.f4WtZy’ ‘~/tmp/scratch/xvfb-run.hSrZ3G’ ‘~/tmp/scratch/xvfb-run.hfEjRS’ ‘~/tmp/scratch/xvfb-run.htyUyU’ ‘~/tmp/scratch/xvfb-run.iE0y7t’ ‘~/tmp/scratch/xvfb-run.jBADlC’ ‘~/tmp/scratch/xvfb-run.jQBpX1’ ‘~/tmp/scratch/xvfb-run.k6T3Le’ ‘~/tmp/scratch/xvfb-run.kEx4VX’ ‘~/tmp/scratch/xvfb-run.keDWlh’ ‘~/tmp/scratch/xvfb-run.lD3oTc’ ‘~/tmp/scratch/xvfb-run.mf4hhe’ ‘~/tmp/scratch/xvfb-run.nE29c9’ ‘~/tmp/scratch/xvfb-run.p3uKpX’ ‘~/tmp/scratch/xvfb-run.pAqAW2’ ‘~/tmp/scratch/xvfb-run.pgJpD4’ ‘~/tmp/scratch/xvfb-run.qlEt3z’ ‘~/tmp/scratch/xvfb-run.r2YXYY’ ‘~/tmp/scratch/xvfb-run.reyYjr’ ‘~/tmp/scratch/xvfb-run.sC2Lh9’ ‘~/tmp/scratch/xvfb-run.sEwF3J’ ‘~/tmp/scratch/xvfb-run.v721L0’ ‘~/tmp/scratch/xvfb-run.vm9rdb’ ‘~/tmp/scratch/xvfb-run.w4zVeH’ ‘~/tmp/scratch/xvfb-run.xLOq9T’ ‘~/tmp/scratch/xvfb-run.zq9f8i’ ‘/dev/shm/sm_segment.gimli1.1001.11f40000.0’ ‘/dev/shm/sm_segment.gimli1.1001.157d0000.0’ ‘/dev/shm/sm_segment.gimli1.1001.16d90000.0’ ‘/dev/shm/sm_segment.gimli1.1001.29d10000.0’ ‘/dev/shm/sm_segment.gimli1.1001.33610000.0’ ‘/dev/shm/sm_segment.gimli1.1001.33d60000.0’ ‘/dev/shm/sm_segment.gimli1.1001.40480000.0’ ‘/dev/shm/sm_segment.gimli1.1001.4f7f0000.0’ ‘/dev/shm/sm_segment.gimli1.1001.50ac0000.0’ ‘/dev/shm/sm_segment.gimli1.1001.62400000.0’ ‘/dev/shm/sm_segment.gimli1.1001.69390000.0’ ‘/dev/shm/sm_segment.gimli1.1001.6c060000.0’ ‘/dev/shm/sm_segment.gimli1.1001.6e9f0000.0’ ‘/dev/shm/sm_segment.gimli1.1001.77920000.0’ ‘/dev/shm/sm_segment.gimli1.1001.788a0000.0’ ‘/dev/shm/sm_segment.gimli1.1001.7e580000.0’ ‘/dev/shm/sm_segment.gimli1.1001.a7aa0000.0’ ‘/dev/shm/sm_segment.gimli1.1001.aa500000.0’ ‘/dev/shm/sm_segment.gimli1.1001.b9ac0000.0’ ‘/dev/shm/sm_segment.gimli1.1001.c55c0000.0’ ‘/dev/shm/sm_segment.gimli1.1001.d3710000.0’ ‘/dev/shm/sm_segment.gimli1.1001.f1560000.0’ ‘/dev/shm/sm_segment.gimli1.1001.fe340000.0’ ‘~/.cache/pocl/uncached/tempfile_0BoMbp’ ‘~/.cache/pocl/uncached/tempfile_0J3APB’ ‘~/.cache/pocl/uncached/tempfile_2cxJ7J’ ‘~/.cache/pocl/uncached/tempfile_6ND6Ap’ ‘~/.cache/pocl/uncached/tempfile_6dzwMN’ ‘~/.cache/pocl/uncached/tempfile_G9NCBj’ ‘~/.cache/pocl/uncached/tempfile_LRD9Cu’ ‘~/.cache/pocl/uncached/tempfile_M4q3EH’ ‘~/.cache/pocl/uncached/tempfile_PywnCk’ ‘~/.cache/pocl/uncached/tempfile_QnpMp9’ ‘~/.cache/pocl/uncached/tempfile_RJl6Sk’ ‘~/.cache/pocl/uncached/tempfile_RU7mSb’ ‘~/.cache/pocl/uncached/tempfile_VNgTOE’ ‘~/.cache/pocl/uncached/tempfile_WTsdIM’ ‘~/.cache/pocl/uncached/tempfile_a3muyg’ ‘~/.cache/pocl/uncached/tempfile_dmxs5R’ ‘~/.cache/pocl/uncached/tempfile_ecuLyu’ ‘~/.cache/pocl/uncached/tempfile_f4omyx’ ‘~/.cache/pocl/uncached/tempfile_jhnq4w’ ‘~/.cache/pocl/uncached/tempfile_oUXmnl’ ‘~/.cache/pocl/uncached/tempfile_r57APx’ ‘~/.cache/pocl/uncached/tempfile_tev4KK’ ‘~/.cache/pocl/uncached/tempfile_ykzo0H’ ‘~/.cache/quarto/sass/sass.kv-shm’ ‘~/.cache/quarto/sass/sass.kv-wal’ Flavor: r-devel-linux-x86_64-debian-gcc