CRAN Package Check Results for Package pagoda2

Last updated on 2026-08-03 01:49:37 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.15 142.74 134.37 277.11 NOTE
r-devel-linux-x86_64-debian-gcc 1.0.15 88.80 97.28 186.08 NOTE
r-devel-linux-x86_64-fedora-clang 1.0.15 195.00 203.90 398.90 OK
r-devel-linux-x86_64-fedora-gcc 1.0.15 97.00 85.32 182.32 OK
r-devel-windows-x86_64 1.0.15 157.00 150.00 307.00 OK
r-patched-linux-x86_64 1.0.15 130.41 125.40 255.81 OK
r-release-linux-x86_64 1.0.15 123.89 124.76 248.65 OK
r-release-macos-arm64 1.0.15 25.00 21.00 46.00 OK
r-release-macos-x86_64 1.0.15 71.00 145.00 216.00 OK
r-release-windows-x86_64 1.0.15 159.00 160.00 319.00 OK
r-oldrel-macos-arm64 1.0.15 22.00 25.00 47.00 OK
r-oldrel-macos-x86_64 1.0.15 74.00 91.00 165.00 OK
r-oldrel-windows-x86_64 1.0.15 177.00 200.00 377.00 OK

Check Details

Version: 1.0.15
Check: Rd contents
Result: NOTE Rd files without \usage: ‘pagoda2WebApp_arrayToJSON.Rd’ ‘pagoda2WebApp_call.Rd’ ‘pagoda2WebApp_generateDendrogramOfGroups.Rd’ ‘pagoda2WebApp_generateGeneKnnJSON.Rd’ ‘pagoda2WebApp_getCompressedEmbedding.Rd’ ‘pagoda2WebApp_packCompressFloat64Array.Rd’ ‘pagoda2WebApp_packCompressInt32Array.Rd’ ‘pagoda2WebApp_readStaticFile.Rd’ ‘pagoda2WebApp_serializeToStaticFast.Rd’ ‘pagoda2WebApp_serverLog.Rd’ ‘pagoda2WebApp_sparseMatList.Rd’ \arguments should not be documented without \usage. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.0.15
Check: for new files in some other directories
Result: NOTE Found the following files/directories: ‘~/tmp/scratch/Rtmp0gNpA7’ ‘~/tmp/scratch/Rtmp1GKl8p’ ‘~/tmp/scratch/Rtmp2FTvph’ ‘~/tmp/scratch/Rtmp2jzAJs’ ‘~/tmp/scratch/Rtmp2kmLK3’ ‘~/tmp/scratch/Rtmp2uDTXl’ ‘~/tmp/scratch/Rtmp3YVywF’ ‘~/tmp/scratch/Rtmp3vZiJJ’ ‘~/tmp/scratch/Rtmp4Kcu5Z’ ‘~/tmp/scratch/Rtmp4Sry4Z’ ‘~/tmp/scratch/Rtmp5OE6AO’ ‘~/tmp/scratch/Rtmp7DXJVl’ ‘~/tmp/scratch/Rtmp7UPSB8’ ‘~/tmp/scratch/Rtmp7xKEuR’ ‘~/tmp/scratch/Rtmp8Lj520’ ‘~/tmp/scratch/Rtmp8uha4P’ ‘~/tmp/scratch/Rtmp96ODQ2’ ‘~/tmp/scratch/Rtmp9L3AHf’ ‘~/tmp/scratch/Rtmp9W7qt8’ ‘~/tmp/scratch/Rtmp9kY2Iv’ ‘~/tmp/scratch/RtmpAClbtg’ ‘~/tmp/scratch/RtmpALLXyX’ ‘~/tmp/scratch/RtmpAOGz3a’ ‘~/tmp/scratch/RtmpBCbhuq’ ‘~/tmp/scratch/RtmpBZ8RUw’ ‘~/tmp/scratch/RtmpBaKS1F’ ‘~/tmp/scratch/RtmpBb0RIE’ ‘~/tmp/scratch/RtmpD3L8oF’ ‘~/tmp/scratch/RtmpDJgK92’ ‘~/tmp/scratch/RtmpDOThnx’ ‘~/tmp/scratch/RtmpEExgdu’ ‘~/tmp/scratch/RtmpEQWMpY’ ‘~/tmp/scratch/RtmpF3PRQj’ ‘~/tmp/scratch/RtmpFIR3jx’ ‘~/tmp/scratch/RtmpFKsvYe’ ‘~/tmp/scratch/RtmpGsIBTm’ ‘~/tmp/scratch/RtmpHQCgcp’ ‘~/tmp/scratch/RtmpIecWW1’ ‘~/tmp/scratch/RtmpIsTmNy’ ‘~/tmp/scratch/RtmpJ23wCj’ ‘~/tmp/scratch/RtmpJCYzBG’ ‘~/tmp/scratch/RtmpJZMEMg’ ‘~/tmp/scratch/RtmpK5BJDl’ ‘~/tmp/scratch/RtmpK84AY2’ ‘~/tmp/scratch/RtmpKDhftd’ ‘~/tmp/scratch/RtmpKJySDm’ ‘~/tmp/scratch/RtmpKn85eL’ ‘~/tmp/scratch/RtmpLGeocr’ ‘~/tmp/scratch/RtmpM1Eqrk’ ‘~/tmp/scratch/RtmpMw7i7U’ ‘~/tmp/scratch/RtmpN0BQwq’ ‘~/tmp/scratch/RtmpNFbIYl’ ‘~/tmp/scratch/RtmpNGvG6m’ ‘~/tmp/scratch/RtmpNzBRyJ’ ‘~/tmp/scratch/RtmpORWPeq’ ‘~/tmp/scratch/RtmpOqVLJt’ ‘~/tmp/scratch/RtmpP4dJAI’ ‘~/tmp/scratch/RtmpP6B1iT’ ‘~/tmp/scratch/RtmpPmxnph’ ‘~/tmp/scratch/RtmpQ1GtoX’ ‘~/tmp/scratch/RtmpQ1tqvk’ ‘~/tmp/scratch/RtmpQOg34d’ ‘~/tmp/scratch/RtmpQh1AAk’ ‘~/tmp/scratch/RtmpQrP0HH’ ‘~/tmp/scratch/RtmpRjfiCu’ ‘~/tmp/scratch/RtmpS0qjBE’ ‘~/tmp/scratch/RtmpS7hlEg’ ‘~/tmp/scratch/RtmpSaQkF7’ ‘~/tmp/scratch/RtmpSgTgrd’ ‘~/tmp/scratch/RtmpSq2h4x’ ‘~/tmp/scratch/RtmpTOUnmB’ ‘~/tmp/scratch/RtmpTkSJ5C’ ‘~/tmp/scratch/RtmpTzKquL’ ‘~/tmp/scratch/RtmpU2r9hz’ ‘~/tmp/scratch/RtmpWIoRSZ’ ‘~/tmp/scratch/RtmpWYLrNJ’ ‘~/tmp/scratch/RtmpWpel2a’ ‘~/tmp/scratch/RtmpWqUiKH’ ‘~/tmp/scratch/RtmpX9jCLc’ ‘~/tmp/scratch/RtmpXLDler’ ‘~/tmp/scratch/RtmpXivxfO’ ‘~/tmp/scratch/RtmpYLvYgQ’ ‘~/tmp/scratch/RtmpYfmdjV’ ‘~/tmp/scratch/RtmpYqx7bJ’ ‘~/tmp/scratch/RtmpZ46E3g’ ‘~/tmp/scratch/RtmpZr15oh’ ‘~/tmp/scratch/RtmpZwSUcx’ ‘~/tmp/scratch/RtmpamOhaz’ ‘~/tmp/scratch/RtmpawQRAx’ ‘~/tmp/scratch/Rtmpb9iyLq’ ‘~/tmp/scratch/RtmpbKhQ4Y’ ‘~/tmp/scratch/Rtmpd81mnx’ ‘~/tmp/scratch/RtmpdAzwkI’ ‘~/tmp/scratch/RtmpdVTCoA’ ‘~/tmp/scratch/Rtmpe7fQtV’ ‘~/tmp/scratch/RtmpeELSMc’ ‘~/tmp/scratch/RtmpeHd8C3’ ‘~/tmp/scratch/RtmpeL6fOF’ ‘~/tmp/scratch/RtmpeRzHSf’ ‘~/tmp/scratch/Rtmpelxq7o’ ‘~/tmp/scratch/RtmpfFaGqj’ ‘~/tmp/scratch/RtmpfU9PIC’ ‘~/tmp/scratch/RtmpfePLRA’ ‘~/tmp/scratch/RtmpfmPiOJ’ ‘~/tmp/scratch/RtmpgRbOtr’ ‘~/tmp/scratch/Rtmph3a7ei’ ‘~/tmp/scratch/Rtmph3hSYk’ ‘~/tmp/scratch/RtmpiiHHjD’ ‘~/tmp/scratch/RtmpitS2Vo’ ‘~/tmp/scratch/RtmpiuTFgU’ ‘~/tmp/scratch/RtmpjAMuPi’ ‘~/tmp/scratch/RtmpjpjmI3’ ‘~/tmp/scratch/RtmpkGkr3H’ ‘~/tmp/scratch/RtmplGXmYA’ ‘~/tmp/scratch/RtmplSn7ha’ ‘~/tmp/scratch/RtmplZsCQA’ ‘~/tmp/scratch/Rtmplg6AFr’ ‘~/tmp/scratch/RtmplpnQ14’ ‘~/tmp/scratch/Rtmpm3FAGB’ ‘~/tmp/scratch/RtmpmQzkZG’ ‘~/tmp/scratch/RtmpmTlrwr’ ‘~/tmp/scratch/RtmpmW5aTP’ ‘~/tmp/scratch/RtmpmzII7L’ ‘~/tmp/scratch/RtmpnES6kX’ ‘~/tmp/scratch/RtmpnriI2F’ ‘~/tmp/scratch/RtmpnrsCrn’ ‘~/tmp/scratch/Rtmpo3aEBN’ ‘~/tmp/scratch/RtmppgwvVO’ ‘~/tmp/scratch/RtmppqTzTa’ ‘~/tmp/scratch/RtmpquPh1b’ ‘~/tmp/scratch/Rtmpqz0kTU’ ‘~/tmp/scratch/Rtmpr9CC21’ ‘~/tmp/scratch/RtmprCCzSp’ ‘~/tmp/scratch/RtmprXYfQR’ ‘~/tmp/scratch/RtmprgMuoy’ ‘~/tmp/scratch/Rtmps5ES1t’ ‘~/tmp/scratch/RtmpscJhQT’ ‘~/tmp/scratch/RtmpsjaZO2’ ‘~/tmp/scratch/RtmpskrJbK’ ‘~/tmp/scratch/Rtmpsqt9ws’ ‘~/tmp/scratch/RtmpszGaI2’ ‘~/tmp/scratch/Rtmpt8iiQG’ ‘~/tmp/scratch/Rtmpt9QR8A’ ‘~/tmp/scratch/RtmptPSfSb’ ‘~/tmp/scratch/RtmptQIvxo’ ‘~/tmp/scratch/RtmpterpmD’ ‘~/tmp/scratch/RtmpuALIcW’ ‘~/tmp/scratch/RtmpuUalCB’ ‘~/tmp/scratch/Rtmpun87P7’ ‘~/tmp/scratch/RtmpuoKTZ3’ ‘~/tmp/scratch/RtmpuoU9IR’ ‘~/tmp/scratch/Rtmpv1Y3oC’ ‘~/tmp/scratch/RtmpvsK1ou’ ‘~/tmp/scratch/RtmpwUXwmj’ ‘~/tmp/scratch/RtmpwXa6US’ ‘~/tmp/scratch/Rtmpwep7iF’ ‘~/tmp/scratch/RtmpwxhekM’ ‘~/tmp/scratch/Rtmpx9wpEz’ ‘~/tmp/scratch/RtmpxDJiCV’ ‘~/tmp/scratch/RtmpxMMgfX’ ‘~/tmp/scratch/RtmpxS21uX’ ‘~/tmp/scratch/Rtmpy9hCnD’ ‘~/tmp/scratch/RtmpyRPraZ’ ‘~/tmp/scratch/RtmpzNRUXe’ ‘~/tmp/scratch/Rtmpzff3RM’ ‘~/tmp/scratch/RtmpzlDlpS’ ‘~/tmp/scratch/cchI5fW7.s’ ‘~/tmp/scratch/xvfb-run.1M0FaV’ ‘~/tmp/scratch/xvfb-run.25e0rm’ ‘~/tmp/scratch/xvfb-run.2DQfCH’ ‘~/tmp/scratch/xvfb-run.3wDURV’ ‘~/tmp/scratch/xvfb-run.494sSm’ ‘~/tmp/scratch/xvfb-run.4r8HVd’ ‘~/tmp/scratch/xvfb-run.8t99Dc’ ‘~/tmp/scratch/xvfb-run.9HkNlV’ ‘~/tmp/scratch/xvfb-run.AS3iqR’ ‘~/tmp/scratch/xvfb-run.AWULVZ’ ‘~/tmp/scratch/xvfb-run.BegzXo’ ‘~/tmp/scratch/xvfb-run.BtZMOM’ ‘~/tmp/scratch/xvfb-run.CL9Aow’ ‘~/tmp/scratch/xvfb-run.CYJpE5’ ‘~/tmp/scratch/xvfb-run.DMnYTV’ ‘~/tmp/scratch/xvfb-run.E7ROAo’ ‘~/tmp/scratch/xvfb-run.ECOF5K’ ‘~/tmp/scratch/xvfb-run.ESVJRf’ ‘~/tmp/scratch/xvfb-run.FySCRt’ ‘~/tmp/scratch/xvfb-run.GLe7Km’ ‘~/tmp/scratch/xvfb-run.H66Mut’ ‘~/tmp/scratch/xvfb-run.HtIlpK’ ‘~/tmp/scratch/xvfb-run.IQguVx’ ‘~/tmp/scratch/xvfb-run.Ie7sQZ’ ‘~/tmp/scratch/xvfb-run.KlNshn’ ‘~/tmp/scratch/xvfb-run.LpNDOT’ ‘~/tmp/scratch/xvfb-run.LrKpe7’ ‘~/tmp/scratch/xvfb-run.Nh0T36’ ‘~/tmp/scratch/xvfb-run.OhiEQ7’ ‘~/tmp/scratch/xvfb-run.PCos5H’ ‘~/tmp/scratch/xvfb-run.PCwRoc’ ‘~/tmp/scratch/xvfb-run.PXuYRT’ ‘~/tmp/scratch/xvfb-run.QbLgRn’ ‘~/tmp/scratch/xvfb-run.QeAOWa’ ‘~/tmp/scratch/xvfb-run.R0QL4s’ ‘~/tmp/scratch/xvfb-run.SZGtIL’ ‘~/tmp/scratch/xvfb-run.Tf6S4n’ ‘~/tmp/scratch/xvfb-run.XC45dq’ ‘~/tmp/scratch/xvfb-run.XwHoKS’ ‘~/tmp/scratch/xvfb-run.aiLLvC’ ‘~/tmp/scratch/xvfb-run.at50Ns’ ‘~/tmp/scratch/xvfb-run.at65N7’ ‘~/tmp/scratch/xvfb-run.bdpGfC’ ‘~/tmp/scratch/xvfb-run.cJPzgZ’ ‘~/tmp/scratch/xvfb-run.dwJmzF’ ‘~/tmp/scratch/xvfb-run.fW7THo’ ‘~/tmp/scratch/xvfb-run.hVsgQi’ ‘~/tmp/scratch/xvfb-run.iRKFp5’ ‘~/tmp/scratch/xvfb-run.j1HNrg’ ‘~/tmp/scratch/xvfb-run.k8kcph’ ‘~/tmp/scratch/xvfb-run.kFYH2j’ ‘~/tmp/scratch/xvfb-run.kdnQgU’ ‘~/tmp/scratch/xvfb-run.lKk7Ep’ ‘~/tmp/scratch/xvfb-run.mnCqDv’ ‘~/tmp/scratch/xvfb-run.oTdEQX’ ‘~/tmp/scratch/xvfb-run.okd3A3’ ‘~/tmp/scratch/xvfb-run.opEhgo’ ‘~/tmp/scratch/xvfb-run.pD77wl’ ‘~/tmp/scratch/xvfb-run.qThzdO’ ‘~/tmp/scratch/xvfb-run.qjenCj’ ‘~/tmp/scratch/xvfb-run.rEWl9R’ ‘~/tmp/scratch/xvfb-run.rVTLmz’ ‘~/tmp/scratch/xvfb-run.sURh5S’ ‘~/tmp/scratch/xvfb-run.tkI0UU’ ‘~/tmp/scratch/xvfb-run.tsvvs6’ ‘~/tmp/scratch/xvfb-run.u2rpqR’ ‘~/tmp/scratch/xvfb-run.vUZaIv’ ‘~/tmp/scratch/xvfb-run.waZEXN’ ‘~/tmp/scratch/xvfb-run.x6DzEa’ ‘~/tmp/scratch/xvfb-run.zvYj3X’ ‘/dev/shm/sm_segment.gimli1.1001.2aa10000.0’ ‘~/.cache/pocl/uncached/tempfile_CqTQ0Q’ Flavor: r-devel-linux-x86_64-debian-gcc