Last updated on 2026-08-03 09:50:40 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.6.2 | 11.49 | 137.05 | 148.54 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.6.2 | 8.18 | 95.55 | 103.73 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.6.2 | 20.00 | 201.37 | 221.37 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.6.2 | 8.00 | 93.38 | 101.38 | ERROR | |
| r-devel-windows-x86_64 | 0.6.2 | 16.00 | 169.00 | 185.00 | OK | |
| r-patched-linux-x86_64 | 0.6.2 | 11.14 | 125.96 | 137.10 | OK | |
| r-release-linux-x86_64 | 0.6.2 | 11.76 | 125.40 | 137.16 | OK | |
| r-release-macos-arm64 | 0.6.2 | 3.00 | 124.00 | 127.00 | OK | |
| r-release-macos-x86_64 | 0.6.2 | 8.00 | 231.00 | 239.00 | OK | |
| r-release-windows-x86_64 | 0.6.2 | 14.00 | 165.00 | 179.00 | OK | |
| r-oldrel-macos-arm64 | 0.6.2 | 3.00 | 134.00 | 137.00 | OK | |
| r-oldrel-macos-x86_64 | 0.6.2 | 8.00 | 235.00 | 243.00 | OK | |
| r-oldrel-windows-x86_64 | 0.6.2 | 20.00 | 186.00 | 206.00 | OK |
Version: 0.6.2
Check: for new files in some other directories
Result: NOTE
Found the following files/directories:
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‘~/tmp/scratch/xvfb-run.By0AyL’ ‘~/tmp/scratch/xvfb-run.EhFcQK’
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‘~/tmp/scratch/xvfb-run.FRP3GL’ ‘~/tmp/scratch/xvfb-run.GlDsG6’
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‘~/tmp/scratch/xvfb-run.LI1Dfg’ ‘~/tmp/scratch/xvfb-run.LODMCV’
‘~/tmp/scratch/xvfb-run.LmyudK’ ‘~/tmp/scratch/xvfb-run.MSpUFN’
‘~/tmp/scratch/xvfb-run.O3vSD9’ ‘~/tmp/scratch/xvfb-run.OB896f’
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‘~/tmp/scratch/xvfb-run.Pk8kkk’ ‘~/tmp/scratch/xvfb-run.PrOKX9’
‘~/tmp/scratch/xvfb-run.RnGNu2’ ‘~/tmp/scratch/xvfb-run.Ry2KcC’
‘~/tmp/scratch/xvfb-run.S3YBJs’ ‘~/tmp/scratch/xvfb-run.SETVta’
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‘~/tmp/scratch/xvfb-run.VPI5mi’ ‘~/tmp/scratch/xvfb-run.VvUX1E’
‘~/tmp/scratch/xvfb-run.WSr5Uy’ ‘~/tmp/scratch/xvfb-run.WZyXLL’
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‘~/tmp/scratch/xvfb-run.ZMTCoK’ ‘~/tmp/scratch/xvfb-run.ZYXPC5’
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‘~/tmp/scratch/xvfb-run.toSMSl’ ‘~/tmp/scratch/xvfb-run.vUsV4F’
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‘~/tmp/scratch/xvfb-run.zmOHhn’
‘/dev/shm/sm_segment.gimli1.1001.14d50000.0’
‘/dev/shm/sm_segment.gimli1.1001.16230000.0’
‘/dev/shm/sm_segment.gimli1.1001.34570000.0’
‘/dev/shm/sm_segment.gimli1.1001.55190000.0’
‘/dev/shm/sm_segment.gimli1.1001.5c9d0000.0’
‘/dev/shm/sm_segment.gimli1.1001.78e50000.0’
‘/dev/shm/sm_segment.gimli1.1001.a14e0000.0’
‘/dev/shm/sm_segment.gimli1.1001.ae7b0000.0’
‘~/.cache/pocl/uncached/tempfile_0qMrCp’
‘~/.cache/pocl/uncached/tempfile_84SJMF’
‘~/.cache/pocl/uncached/tempfile_MdUKd3’
‘~/.cache/pocl/uncached/tempfile_Qt6STC’
‘~/.cache/pocl/uncached/tempfile_TbdAb1’
‘~/.cache/pocl/uncached/tempfile_aZzIKR’
‘~/.cache/pocl/uncached/tempfile_lOThU1’
‘~/.cache/pocl/uncached/tempfile_vEWBOB’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.6.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [9s/286s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(occCite)
>
> test_check("occCite")
Saving _problems/test-occCitation-80.R
Saving _problems/test-occCitation-82.R
Saving _problems/test-occCitation-86.R
Saving _problems/test-occCitation-89.R
Saving _problems/test-occCitation-93.R
Saving _problems/test-occCitation-95.R
Saving _problems/test-occCitation-99.R
Saving _problems/test-occCitation-101.R
Saving _problems/test-occCitation-105.R
Saving _problems/test-occCitation-107.R
Saving _problems/test-occCitation-110.R
Saving _problems/test-occCitation-111.R
OccCite query occurred on: 20 June, 2024
User query type: User-supplied list of taxa.
Sources for taxonomic rectification: GBIF Backbone Taxonomy
Taxonomic cleaning results:
Input Name Best Match Taxonomic Databases w/ Matches
1 Protea cynaroides Protea cynaroides (L.) L. GBIF Backbone Taxonomy
Sources for occurrence data: gbif, bien
Species Occurrences Sources
1 Protea cynaroides (L.) L. 2334 17
GBIF dataset DOIs:
Species GBIF Access Date GBIF DOI
1 Protea cynaroides (L.) L. 2022-03-02 10.15468/dl.ztbx8c
OccCite query occurred on: 20 June, 2024
User query type: User-supplied list of taxa.
Sources for taxonomic rectification: GBIF Backbone Taxonomy
Taxonomic cleaning results:
Input Name Best Match Taxonomic Databases w/ Matches
1 Protea cynaroides Protea cynaroides (L.) L. GBIF Backbone Taxonomy
Sources for occurrence data: gbif
Species Occurrences Sources
1 Protea cynaroides (L.) L. 2189 13
GBIF dataset DOIs:
Species GBIF Access Date GBIF DOI
1 Protea cynaroides (L.) L. 2022-03-02 10.15468/dl.ztbx8c
OccCite query occurred on: 20 June, 2024
User query type: User-supplied list of taxa.
Sources for taxonomic rectification: GBIF Backbone Taxonomy
Taxonomic cleaning results:
Input Name Best Match Taxonomic Databases w/ Matches
1 Protea cynaroides Protea cynaroides (L.) L. GBIF Backbone Taxonomy
Sources for occurrence data: bien
Species Occurrences Sources
1 Protea cynaroides (L.) L. 145 4
[1] "Checking ggplot version...4.0.3"
Failed with error: 'there is no package called 'waffle''
Failed with error: 'there is no package called 'waffle''
[ FAIL 12 | WARN 0 | SKIP 20 | PASS 154 ]
══ Skipped tests (20) ══════════════════════════════════════════════════════════
• !requireNamespace(paste0("waf", "fle"), quietly = TRUE) is TRUE (2):
'test-sumFig.R:47:3', 'test-sumFig.R:56:3'
• GBIF login available (1): 'test-GBIFLoginManager.R:16:3'
• On CRAN (14): 'test-GBIFLoginManager.R:24:3', 'test-GBIFtableCleanup.R:6:3',
'test-gbifRetriever.R:6:3', 'test-gbifRetriever.R:29:3',
'test-getBIENpoints.R:6:3', 'test-getBIENpoints.R:28:3',
'test-getGBIFpoints.R:6:3', 'test-getGBIFpoints.R:24:3',
'test-occCitation.R:26:3', 'test-prevGBIFdownload.R:6:3',
'test-prevGBIFdownload.R:34:3', 'test-tabGBIF.R:9:3', 'test-tabGBIF.R:24:3',
'test-tabGBIF.R:48:3'
• empty test (2): 'test-sumFig.R:13:1', 'test-sumFig.R:25:1'
• internet connection established (1): 'test-occCitation.R:115:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-occCitation.R:80:3'): outputs for BIEN results are as expected ──
Expected `class(testResults) == "occCiteCitation"` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test-occCitation.R:82:3'): outputs for BIEN results are as expected ──
Expected `"occCitationResults" %in% names(testResults)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test-occCitation.R:83:3'): outputs for BIEN results are as expected ──
Expected `class(testResults$occCitationResults[[1]])` to equal "data.frame".
Differences:
1/1 mismatches
x[1]: "NULL"
y[1]: "data.frame"
── Failure ('test-occCitation.R:88:3'): outputs for BIEN results are as expected ──
Expected `"occSearch" %in% names(testResults$occCitationResults[[1]])` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test-occCitation.R:90:3'): outputs for BIEN results are as expected ──
Expected `class(testResults$occCitationResults[[1]]$occSearch)` to equal "character".
Differences:
1/1 mismatches
x[1]: "NULL"
y[1]: "character"
── Failure ('test-occCitation.R:94:3'): outputs for BIEN results are as expected ──
Expected `"Dataset Key" %in% names(testResults$occCitationResults[[1]])` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test-occCitation.R:96:3'): outputs for BIEN results are as expected ──
Expected `class(testResults$occCitationResults[[1]]$`Dataset Key`)` to equal "character".
Differences:
1/1 mismatches
x[1]: "NULL"
y[1]: "character"
── Failure ('test-occCitation.R:100:3'): outputs for BIEN results are as expected ──
Expected `"Citation" %in% names(testResults$occCitationResults[[1]])` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test-occCitation.R:102:3'): outputs for BIEN results are as expected ──
Expected `class(testResults$occCitationResults[[1]]$Citation)` to equal "character".
Differences:
1/1 mismatches
x[1]: "NULL"
y[1]: "character"
── Failure ('test-occCitation.R:106:3'): outputs for BIEN results are as expected ──
Expected `"Accession Date" %in% names(testResults$occCitationResults[[1]])` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test-occCitation.R:109:3'): outputs for BIEN results are as expected ──
Expected `"Number of Occurrences" %in% names(testResults$occCitationResults[[1]])` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test-occCitation.R:111:3'): outputs for BIEN results are as expected ──
Expected `is.numeric(testResults$occCitationResults[[1]]$`Number of Occurrences`)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
[ FAIL 12 | WARN 0 | SKIP 20 | PASS 154 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc