CRAN Package Check Results for Package nlmixr2est

Last updated on 2026-08-02 21:53:43 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	6.0.1	275.50	235.28	510.78	NOTE
r-devel-linux-x86_64-debian-gcc	6.0.1	208.44	162.14	370.58	NOTE
r-devel-linux-x86_64-fedora-clang	6.0.1	349.00	343.84	692.84	NOTE
r-devel-linux-x86_64-fedora-gcc	6.0.1	257.00	149.13	406.13	NOTE
r-devel-windows-x86_64	6.0.1	325.00	230.00	555.00	ERROR
r-patched-linux-x86_64	6.0.1	280.37	218.24	498.61	OK
r-release-linux-x86_64	6.0.1	297.79	219.14	516.93	OK
r-release-macos-arm64	6.0.1	64.00	13.00	77.00	OK
r-release-macos-x86_64	6.0.1	196.00	114.00	310.00	OK
r-release-windows-x86_64	6.0.1	333.00	245.00	578.00	ERROR
r-oldrel-macos-arm64	6.0.1	56.00	24.00	80.00	OK
r-oldrel-macos-x86_64	6.0.1	195.00	249.00	444.00	OK
r-oldrel-windows-x86_64	6.0.1	428.00	318.00	746.00	ERROR

Check Details

Version: 6.0.1
Check: R code for possible problems
Result: NOTE Found calls to structure() using deprecated special names: nlmixr2est/R/print.R (.Names: 1) nlmixr2est/tests/testthat/test-saem-translate.R (.Dim: 5, .Names: 2) '.Names' should be changed to 'names'. '.Dim' should be changed to 'dim'. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64

Version: 6.0.1
Check: for new files in some other directories
Result: NOTE Found the following files/directories: ‘~/tmp/scratch/Rtmp0XuCaL’ ‘~/tmp/scratch/Rtmp0ckFyS’ ‘~/tmp/scratch/Rtmp2AoXxM’ ‘~/tmp/scratch/Rtmp2LUuB5’ ‘~/tmp/scratch/Rtmp2VOrqY’ ‘~/tmp/scratch/Rtmp3Govdr’ ‘~/tmp/scratch/Rtmp3gxmgd’ ‘~/tmp/scratch/Rtmp3s4Ld3’ ‘~/tmp/scratch/Rtmp3tgkEn’ ‘~/tmp/scratch/Rtmp464kBr’ ‘~/tmp/scratch/Rtmp4E0bUG’ ‘~/tmp/scratch/Rtmp4cktgP’ ‘~/tmp/scratch/Rtmp4rrEDr’ ‘~/tmp/scratch/Rtmp531jFu’ ‘~/tmp/scratch/Rtmp5EjRfl’ ‘~/tmp/scratch/Rtmp5ZcLds’ ‘~/tmp/scratch/Rtmp64RF3i’ ‘~/tmp/scratch/Rtmp6aceB3’ ‘~/tmp/scratch/Rtmp7AeIdN’ ‘~/tmp/scratch/Rtmp7MlfJQ’ ‘~/tmp/scratch/Rtmp7eERgp’ ‘~/tmp/scratch/Rtmp7uecZZ’ ‘~/tmp/scratch/Rtmp8Wvi1Y’ ‘~/tmp/scratch/Rtmp8qt068’ ‘~/tmp/scratch/Rtmp9A5zTT’ ‘~/tmp/scratch/Rtmp9ed9eo’ ‘~/tmp/scratch/Rtmp9wICRs’ ‘~/tmp/scratch/RtmpBc8EVT’ ‘~/tmp/scratch/RtmpBcrnu2’ ‘~/tmp/scratch/RtmpChbUm4’ ‘~/tmp/scratch/RtmpCkAM3x’ ‘~/tmp/scratch/RtmpDX6jw8’ ‘~/tmp/scratch/RtmpDYLHj0’ ‘~/tmp/scratch/RtmpEjrIZr’ ‘~/tmp/scratch/RtmpEq4d2q’ ‘~/tmp/scratch/RtmpFfDcs5’ ‘~/tmp/scratch/RtmpGRSqxo’ ‘~/tmp/scratch/RtmpGfuHWy’ ‘~/tmp/scratch/RtmpH8aADM’ ‘~/tmp/scratch/RtmpHXVyfn’ ‘~/tmp/scratch/RtmpI41LBf’ ‘~/tmp/scratch/RtmpJhzfoE’ ‘~/tmp/scratch/RtmpJitolN’ ‘~/tmp/scratch/RtmpJqQw9E’ ‘~/tmp/scratch/RtmpK2G2Zf’ ‘~/tmp/scratch/RtmpL6MX01’ ‘~/tmp/scratch/RtmpMBx6Kf’ ‘~/tmp/scratch/RtmpMpBOVW’ ‘~/tmp/scratch/RtmpN9dbvn’ ‘~/tmp/scratch/RtmpNAmlN9’ ‘~/tmp/scratch/RtmpNR4Ias’ ‘~/tmp/scratch/RtmpNkFZ3U’ ‘~/tmp/scratch/RtmpOEWzzc’ ‘~/tmp/scratch/RtmpOZzowE’ ‘~/tmp/scratch/RtmpOqz6HM’ ‘~/tmp/scratch/RtmpOskfPo’ ‘~/tmp/scratch/RtmpQDIskd’ ‘~/tmp/scratch/RtmpQLbNHe’ ‘~/tmp/scratch/RtmpQjQd55’ ‘~/tmp/scratch/RtmpQurA9u’ ‘~/tmp/scratch/RtmpR028JQ’ ‘~/tmp/scratch/RtmpRSlRla’ ‘~/tmp/scratch/RtmpRmkx3p’ ‘~/tmp/scratch/RtmpSU1LqL’ ‘~/tmp/scratch/RtmpSamv4J’ ‘~/tmp/scratch/RtmpSqwTpI’ ‘~/tmp/scratch/RtmpSyplIh’ ‘~/tmp/scratch/RtmpTZCyiB’ ‘~/tmp/scratch/RtmpUFZ9qK’ ‘~/tmp/scratch/RtmpUWeApV’ ‘~/tmp/scratch/RtmpUoLZxN’ ‘~/tmp/scratch/RtmpUqSFFe’ ‘~/tmp/scratch/RtmpUvZNmw’ ‘~/tmp/scratch/RtmpVU1iNz’ ‘~/tmp/scratch/RtmpVo5es1’ ‘~/tmp/scratch/RtmpVpPXSX’ ‘~/tmp/scratch/RtmpVrvqNZ’ ‘~/tmp/scratch/RtmpVxcuQ2’ ‘~/tmp/scratch/RtmpWFf3qy’ ‘~/tmp/scratch/RtmpWoSntO’ ‘~/tmp/scratch/RtmpXDBmFm’ ‘~/tmp/scratch/RtmpXIw1By’ ‘~/tmp/scratch/RtmpXk67D4’ ‘~/tmp/scratch/RtmpYBH8he’ ‘~/tmp/scratch/RtmpYqoJXI’ ‘~/tmp/scratch/RtmpYuueJC’ ‘~/tmp/scratch/RtmpZ9945T’ ‘~/tmp/scratch/RtmpZoBpQb’ ‘~/tmp/scratch/RtmpaTxrmW’ ‘~/tmp/scratch/RtmpaWFT2Q’ ‘~/tmp/scratch/Rtmpab65Wu’ ‘~/tmp/scratch/RtmpadpQl1’ ‘~/tmp/scratch/Rtmpb12tSl’ ‘~/tmp/scratch/RtmpbH52Ie’ ‘~/tmp/scratch/RtmpbNm7LE’ ‘~/tmp/scratch/Rtmpcpb9iw’ ‘~/tmp/scratch/RtmpdvPaLO’ ‘~/tmp/scratch/Rtmperzj3H’ ‘~/tmp/scratch/RtmpfWff9K’ ‘~/tmp/scratch/RtmpfbgVB4’ ‘~/tmp/scratch/Rtmpfip3Cu’ ‘~/tmp/scratch/Rtmpgw0DxU’ ‘~/tmp/scratch/Rtmpgw81lq’ ‘~/tmp/scratch/RtmphE7Cd8’ ‘~/tmp/scratch/RtmphQpp3Z’ ‘~/tmp/scratch/RtmphTt23w’ ‘~/tmp/scratch/RtmphWmIFL’ ‘~/tmp/scratch/RtmphdA53d’ ‘~/tmp/scratch/RtmpitTVf4’ ‘~/tmp/scratch/Rtmpj8SyiN’ ‘~/tmp/scratch/RtmpjmUivJ’ ‘~/tmp/scratch/RtmplL7IDc’ ‘~/tmp/scratch/RtmplLEBJs’ ‘~/tmp/scratch/RtmplPDA5r’ ‘~/tmp/scratch/RtmplPEENj’ ‘~/tmp/scratch/RtmplX1as6’ ‘~/tmp/scratch/RtmpmHk21r’ ‘~/tmp/scratch/RtmpmhfaeF’ ‘~/tmp/scratch/RtmpmoE2Wa’ ‘~/tmp/scratch/RtmpnpxcqZ’ ‘~/tmp/scratch/Rtmpo6qBPS’ ‘~/tmp/scratch/RtmpoKIIeO’ ‘~/tmp/scratch/Rtmpp5T2KT’ ‘~/tmp/scratch/RtmppICZih’ ‘~/tmp/scratch/RtmppZhFmV’ ‘~/tmp/scratch/RtmpqJEwZc’ ‘~/tmp/scratch/RtmpqTg4va’ ‘~/tmp/scratch/RtmpqVJ0Oa’ ‘~/tmp/scratch/RtmprqysMl’ ‘~/tmp/scratch/Rtmps2u1Ol’ ‘~/tmp/scratch/RtmpsP4VOu’ ‘~/tmp/scratch/RtmpsdHYAV’ ‘~/tmp/scratch/RtmpsdbBfW’ ‘~/tmp/scratch/Rtmpt2ena9’ ‘~/tmp/scratch/RtmptClajA’ ‘~/tmp/scratch/RtmptPkz5v’ ‘~/tmp/scratch/RtmptluZol’ ‘~/tmp/scratch/RtmpuRs7v7’ ‘~/tmp/scratch/RtmpuTbqdN’ ‘~/tmp/scratch/Rtmpua2f6S’ ‘~/tmp/scratch/RtmpuplXdX’ ‘~/tmp/scratch/Rtmpv2JuM4’ ‘~/tmp/scratch/RtmpvEEGwI’ ‘~/tmp/scratch/RtmpvcNkbO’ ‘~/tmp/scratch/Rtmpw4fsDA’ ‘~/tmp/scratch/Rtmpx7bJVZ’ ‘~/tmp/scratch/RtmpxwXtne’ ‘~/tmp/scratch/Rtmpy86G2K’ ‘~/tmp/scratch/RtmpyBODbf’ ‘~/tmp/scratch/RtmpyUlLD8’ ‘~/tmp/scratch/RtmpzAS9aj’ ‘~/tmp/scratch/RtmpziNfxc’ ‘~/tmp/scratch/xvfb-run.01O09C’ ‘~/tmp/scratch/xvfb-run.0MaJDi’ ‘~/tmp/scratch/xvfb-run.0wicS5’ ‘~/tmp/scratch/xvfb-run.11xLl4’ ‘~/tmp/scratch/xvfb-run.1VoDhn’ ‘~/tmp/scratch/xvfb-run.1bKEwY’ ‘~/tmp/scratch/xvfb-run.1kB5Pb’ ‘~/tmp/scratch/xvfb-run.2fP2b5’ ‘~/tmp/scratch/xvfb-run.3RRtl3’ ‘~/tmp/scratch/xvfb-run.3VYL3w’ ‘~/tmp/scratch/xvfb-run.3sPYqy’ ‘~/tmp/scratch/xvfb-run.5ffen8’ ‘~/tmp/scratch/xvfb-run.8GLOdg’ ‘~/tmp/scratch/xvfb-run.9119RA’ ‘~/tmp/scratch/xvfb-run.9PQdAQ’ ‘~/tmp/scratch/xvfb-run.AEYW7f’ ‘~/tmp/scratch/xvfb-run.ASOKGf’ ‘~/tmp/scratch/xvfb-run.CTKD6U’ ‘~/tmp/scratch/xvfb-run.ChTIMH’ ‘~/tmp/scratch/xvfb-run.E0jkxP’ ‘~/tmp/scratch/xvfb-run.GVHxQ7’ ‘~/tmp/scratch/xvfb-run.IuDOxZ’ ‘~/tmp/scratch/xvfb-run.Ixtd0O’ ‘~/tmp/scratch/xvfb-run.J3mVxM’ ‘~/tmp/scratch/xvfb-run.KquSQ5’ ‘~/tmp/scratch/xvfb-run.Q3FJgK’ ‘~/tmp/scratch/xvfb-run.Qf77uE’ ‘~/tmp/scratch/xvfb-run.Qw8snz’ ‘~/tmp/scratch/xvfb-run.REDvRG’ ‘~/tmp/scratch/xvfb-run.RiLNKS’ ‘~/tmp/scratch/xvfb-run.SFQ6RN’ ‘~/tmp/scratch/xvfb-run.T7jPRL’ ‘~/tmp/scratch/xvfb-run.T8KlBV’ ‘~/tmp/scratch/xvfb-run.UQhQo8’ ‘~/tmp/scratch/xvfb-run.VjRYW6’ ‘~/tmp/scratch/xvfb-run.W83mcE’ ‘~/tmp/scratch/xvfb-run.XLfJ0E’ ‘~/tmp/scratch/xvfb-run.YIwIm6’ ‘~/tmp/scratch/xvfb-run.ZXRYeK’ ‘~/tmp/scratch/xvfb-run.aOXR8M’ ‘~/tmp/scratch/xvfb-run.bc6cKM’ ‘~/tmp/scratch/xvfb-run.cJoajc’ ‘~/tmp/scratch/xvfb-run.d57K1q’ ‘~/tmp/scratch/xvfb-run.iHys0x’ ‘~/tmp/scratch/xvfb-run.j6m2uQ’ ‘~/tmp/scratch/xvfb-run.jA7rpp’ ‘~/tmp/scratch/xvfb-run.jxSN6M’ ‘~/tmp/scratch/xvfb-run.jyPixl’ ‘~/tmp/scratch/xvfb-run.kwEAUe’ ‘~/tmp/scratch/xvfb-run.n6mp8r’ ‘~/tmp/scratch/xvfb-run.oCeolm’ ‘~/tmp/scratch/xvfb-run.ojkBSL’ ‘~/tmp/scratch/xvfb-run.pSlmfl’ ‘~/tmp/scratch/xvfb-run.q5UHxl’ ‘~/tmp/scratch/xvfb-run.q7hno6’ ‘~/tmp/scratch/xvfb-run.qHsd9K’ ‘~/tmp/scratch/xvfb-run.qVLzK9’ ‘~/tmp/scratch/xvfb-run.r5Bol0’ ‘~/tmp/scratch/xvfb-run.r75zK7’ ‘~/tmp/scratch/xvfb-run.rP8q8W’ ‘~/tmp/scratch/xvfb-run.rZKALK’ ‘~/tmp/scratch/xvfb-run.sWOaxQ’ ‘~/tmp/scratch/xvfb-run.vMJopY’ ‘~/tmp/scratch/xvfb-run.xMRgBa’ ‘~/tmp/scratch/xvfb-run.zqzSI8’ ‘~/tmp/scratch/xvfb-run.zxGYt2’ ‘/dev/shm/sm_segment.gimli1.1001.2e1c0000.0’ ‘/dev/shm/sm_segment.gimli1.1001.3b770000.0’ ‘/dev/shm/sm_segment.gimli1.1001.d4030000.0’ ‘~/.cache/pocl/uncached/tempfile_0KaPTu’ ‘~/.cache/pocl/uncached/tempfile_0Q5jND’ ‘~/.cache/pocl/uncached/tempfile_0qgP27’ ‘~/.cache/pocl/uncached/tempfile_kBAkV9’ Flavor: r-devel-linux-x86_64-debian-gcc

Version: 6.0.1
Check: tests
Result: ERROR Running 'testthat.R' [32s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(data.table) Attaching package: 'data.table' The following object is masked from 'package:base': %notin% > library(rxode2) rxode2 5.1.5 using 2 threads (see ?getRxThreads) no cache: create with `rxCreateCache()` > library(nlmixr2est) Loading required package: nlmixr2data Attaching package: 'nlmixr2est' The following objects are masked from 'package:rxode2': boxCox, yeoJohnson > library(testthat) > if (!identical(Sys.getenv("NOT_CRAN"), "true")) { + # when testing CRAN, only use two thread + setRxThreads(2L) + setDTthreads(2L) + Sys.setenv(OMP_NUM_THREADS = "2") + Sys.setenv(MKL_NUM_THREADS = "2") + if (identical(Sys.info()["sysname"], "Darwin")) { + rxode2::rxUnloadAll(set=FALSE) + } + } > > test_check("nlmixr2est") ✓ Loading cached fit: one.compartment.fit.saem ✓ Loading cached fit: one.compartment.fit.saem.cwres ✓ Loading cached fit: one.compartment.fit.focei ✓ Loading cached fit: one.compartment.fit.focei.fast ✓ Loading cached fit: one.compartment.fit.foce ✓ Loading cached fit: one.compartment.fit.foi ✓ Loading cached fit: one.compartment.fit.fo ✓ Loading cached fit: one.compartment.fit.posthoc ✓ Loading cached fit: one.compartment.with.lag.fit.focei ✓ Loading cached fit: one.compartment.with.lag.fit.saem ✓ Helper-fits.R loaded successfully Cache version: v1.0.2-nlmixr2est-6.0.1 Cache directory: ./fixtures Flavors: r-devel-windows-x86_64, r-release-windows-x86_64

Version: 6.0.1
Check: tests
Result: ERROR Running 'testthat.R' [41s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(data.table) > library(rxode2) rxode2 5.1.5 using 2 threads (see ?getRxThreads) no cache: create with `rxCreateCache()` > library(nlmixr2est) Loading required package: nlmixr2data Attaching package: 'nlmixr2est' The following objects are masked from 'package:rxode2': boxCox, yeoJohnson > library(testthat) > if (!identical(Sys.getenv("NOT_CRAN"), "true")) { + # when testing CRAN, only use two thread + setRxThreads(2L) + setDTthreads(2L) + Sys.setenv(OMP_NUM_THREADS = "2") + Sys.setenv(MKL_NUM_THREADS = "2") + if (identical(Sys.info()["sysname"], "Darwin")) { + rxode2::rxUnloadAll(set=FALSE) + } + } > > test_check("nlmixr2est") ✓ Loading cached fit: one.compartment.fit.saem ✓ Loading cached fit: one.compartment.fit.saem.cwres ✓ Loading cached fit: one.compartment.fit.focei ✓ Loading cached fit: one.compartment.fit.focei.fast ✓ Loading cached fit: one.compartment.fit.foce ✓ Loading cached fit: one.compartment.fit.foi ✓ Loading cached fit: one.compartment.fit.fo ✓ Loading cached fit: one.compartment.fit.posthoc ✓ Loading cached fit: one.compartment.with.lag.fit.focei ✓ Loading cached fit: one.compartment.with.lag.fit.saem ✓ Helper-fits.R loaded successfully Cache version: v1.0.2-nlmixr2est-6.0.1 Cache directory: ./fixtures Flavor: r-oldrel-windows-x86_64