Last updated on 2026-08-04 07:50:56 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.14.5 | 10.41 | 126.20 | 136.61 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.14.5 | 7.25 | 103.04 | 110.29 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.14.5 | 18.00 | 190.78 | 208.78 | NOTE | |
| r-devel-linux-x86_64-fedora-gcc | 1.14.5 | 93.58 | NOTE | |||
| r-devel-windows-x86_64 | 1.14.5 | 12.00 | 133.00 | 145.00 | NOTE | |
| r-patched-linux-x86_64 | 1.14.5 | 10.46 | 118.74 | 129.20 | OK | |
| r-release-linux-x86_64 | 1.14.5 | 9.93 | 120.12 | 130.05 | OK | |
| r-release-macos-arm64 | 1.14.5 | 3.00 | 38.00 | 41.00 | OK | |
| r-release-macos-x86_64 | 1.14.5 | 7.00 | 155.00 | 162.00 | OK | |
| r-release-windows-x86_64 | 1.14.5 | 12.00 | 136.00 | 148.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.14.5 | 3.00 | 37.00 | 40.00 | OK | |
| r-oldrel-macos-x86_64 | 1.14.5 | 7.00 | 194.00 | 201.00 | OK | |
| r-oldrel-windows-x86_64 | 1.14.5 | 16.00 | 171.00 | 187.00 | OK |
Version: 1.14.5
Check: R code for possible problems
Result: NOTE
Found calls to structure() using deprecated special names:
netgwas/tests/testthat/test_cutoffs.R (.Dim: 2)
netgwas/tests/testthat/test_lower.upper.R (.Dim: 3, .Names: 1)
'.Dim' should be changed to 'dim'.
'.Names' should be changed to 'names'.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 1.14.5
Check: for new files in some other directories
Result: NOTE
Found the following files/directories:
‘~/tmp/scratch/Rtmp1Oeaia’ ‘~/tmp/scratch/Rtmp2FRQw2’
‘~/tmp/scratch/Rtmp2MEe9X’ ‘~/tmp/scratch/Rtmp2pTCqV’
‘~/tmp/scratch/Rtmp2twPma’ ‘~/tmp/scratch/Rtmp3gHSVZ’
‘~/tmp/scratch/Rtmp47uio8’ ‘~/tmp/scratch/Rtmp4AyBWn’
‘~/tmp/scratch/Rtmp4e5m5J’ ‘~/tmp/scratch/Rtmp569xJN’
‘~/tmp/scratch/Rtmp78Ilmp’ ‘~/tmp/scratch/Rtmp7mWweJ’
‘~/tmp/scratch/Rtmp8KjK5D’ ‘~/tmp/scratch/Rtmp9WrLXg’
‘~/tmp/scratch/RtmpA6CXeg’ ‘~/tmp/scratch/RtmpA6LDXT’
‘~/tmp/scratch/RtmpAM1Ga6’ ‘~/tmp/scratch/RtmpAXePoT’
‘~/tmp/scratch/RtmpB0xVxn’ ‘~/tmp/scratch/RtmpBFWpa3’
‘~/tmp/scratch/RtmpBQnkzB’ ‘~/tmp/scratch/RtmpDHpJzI’
‘~/tmp/scratch/RtmpDYMaqf’ ‘~/tmp/scratch/RtmpDwqfuh’
‘~/tmp/scratch/RtmpE3dTB1’ ‘~/tmp/scratch/RtmpESp5dR’
‘~/tmp/scratch/RtmpEqvfY4’ ‘~/tmp/scratch/RtmpEsZNwu’
‘~/tmp/scratch/RtmpF9dvSQ’ ‘~/tmp/scratch/RtmpFAPbsz’
‘~/tmp/scratch/RtmpFWUPSz’ ‘~/tmp/scratch/RtmpFfQfX9’
‘~/tmp/scratch/RtmpHRhe2b’ ‘~/tmp/scratch/RtmpHUBgmx’
‘~/tmp/scratch/RtmpI9zzZN’ ‘~/tmp/scratch/RtmpIG47si’
‘~/tmp/scratch/RtmpIG6Ar7’ ‘~/tmp/scratch/RtmpIHEsJx’
‘~/tmp/scratch/RtmpInVahZ’ ‘~/tmp/scratch/RtmpJ0MGxH’
‘~/tmp/scratch/RtmpJNw4sE’ ‘~/tmp/scratch/RtmpJZJN16’
‘~/tmp/scratch/RtmpK9dAHV’ ‘~/tmp/scratch/RtmpKGsyPq’
‘~/tmp/scratch/RtmpKf4E7m’ ‘~/tmp/scratch/RtmpL9QdWH’
‘~/tmp/scratch/RtmpLBRAOg’ ‘~/tmp/scratch/RtmpLYtdNC’
‘~/tmp/scratch/RtmpLk7dmG’ ‘~/tmp/scratch/RtmpLnW1q2’
‘~/tmp/scratch/RtmpMHznJo’ ‘~/tmp/scratch/RtmpMa12xI’
‘~/tmp/scratch/RtmpN0J7EG’ ‘~/tmp/scratch/RtmpOAc6VO’
‘~/tmp/scratch/RtmpOHZeR4’ ‘~/tmp/scratch/RtmpOjiwMC’
‘~/tmp/scratch/RtmpOsBrUQ’ ‘~/tmp/scratch/RtmpOvWMhM’
‘~/tmp/scratch/RtmpP6kJfk’ ‘~/tmp/scratch/RtmpPAB0eW’
‘~/tmp/scratch/RtmpPLVC86’ ‘~/tmp/scratch/RtmpPhucze’
‘~/tmp/scratch/RtmpQujTxs’ ‘~/tmp/scratch/RtmpQurVTz’
‘~/tmp/scratch/RtmpRT1Puz’ ‘~/tmp/scratch/RtmpRdTLOM’
‘~/tmp/scratch/RtmpSfMXl1’ ‘~/tmp/scratch/RtmpT6bSFq’
‘~/tmp/scratch/RtmpTfxGK3’ ‘~/tmp/scratch/RtmpTvtNJD’
‘~/tmp/scratch/RtmpUX8vAO’ ‘~/tmp/scratch/RtmpUk76Dk’
‘~/tmp/scratch/RtmpV2IlcC’ ‘~/tmp/scratch/RtmpVqWS0c’
‘~/tmp/scratch/RtmpWMmDbT’ ‘~/tmp/scratch/RtmpWozVbW’
‘~/tmp/scratch/RtmpXAyiU1’ ‘~/tmp/scratch/RtmpXSWGGU’
‘~/tmp/scratch/RtmpXU37mJ’ ‘~/tmp/scratch/RtmpXuqmcO’
‘~/tmp/scratch/RtmpXwGZHU’ ‘~/tmp/scratch/RtmpYowoba’
‘~/tmp/scratch/RtmpZ6BO4k’ ‘~/tmp/scratch/RtmpZGxGqr’
‘~/tmp/scratch/RtmpaIY480’ ‘~/tmp/scratch/RtmpaKwrtE’
‘~/tmp/scratch/RtmpbT3n82’ ‘~/tmp/scratch/RtmpbvgLhs’
‘~/tmp/scratch/Rtmpcf2uyW’ ‘~/tmp/scratch/Rtmpcih261’
‘~/tmp/scratch/Rtmpcx9N2b’ ‘~/tmp/scratch/Rtmpdjs8Oi’
‘~/tmp/scratch/Rtmpe8LBnw’ ‘~/tmp/scratch/RtmpeN6DHo’
‘~/tmp/scratch/Rtmpehlvxl’ ‘~/tmp/scratch/RtmpennikM’
‘~/tmp/scratch/RtmpfEyJxb’ ‘~/tmp/scratch/RtmpfSgd6G’
‘~/tmp/scratch/RtmpgFATph’ ‘~/tmp/scratch/Rtmph7RURE’
‘~/tmp/scratch/RtmphEKHAP’ ‘~/tmp/scratch/RtmphTKzXM’
‘~/tmp/scratch/RtmpilcOuj’ ‘~/tmp/scratch/RtmpjEMhth’
‘~/tmp/scratch/RtmpjKOzdF’ ‘~/tmp/scratch/RtmpjmQy5d’
‘~/tmp/scratch/RtmpkkL5ob’ ‘~/tmp/scratch/Rtmpkp0RSq’
‘~/tmp/scratch/Rtmpky0oRS’ ‘~/tmp/scratch/Rtmpl8xwYB’
‘~/tmp/scratch/RtmplF5G9k’ ‘~/tmp/scratch/RtmpleDX3a’
‘~/tmp/scratch/Rtmpn0fnl5’ ‘~/tmp/scratch/Rtmpn3uzvE’
‘~/tmp/scratch/Rtmpn4P3Xp’ ‘~/tmp/scratch/RtmpnEWJCE’
‘~/tmp/scratch/RtmpomuaXA’ ‘~/tmp/scratch/RtmpoprX4o’
‘~/tmp/scratch/Rtmpov5fOA’ ‘~/tmp/scratch/RtmppXFGOx’
‘~/tmp/scratch/RtmppYfWfi’ ‘~/tmp/scratch/RtmppeGla5’
‘~/tmp/scratch/Rtmppng0re’ ‘~/tmp/scratch/RtmppzNQzo’
‘~/tmp/scratch/Rtmpq9WVPR’ ‘~/tmp/scratch/Rtmpqofrn7’
‘~/tmp/scratch/RtmprlnEGm’ ‘~/tmp/scratch/RtmprriPEE’
‘~/tmp/scratch/RtmprzZfoT’ ‘~/tmp/scratch/RtmpsZUZES’
‘~/tmp/scratch/RtmptOkL84’ ‘~/tmp/scratch/RtmptnS2WA’
‘~/tmp/scratch/RtmpuP20uP’ ‘~/tmp/scratch/Rtmpuh95tv’
‘~/tmp/scratch/RtmpulW2BO’ ‘~/tmp/scratch/RtmpurDzh6’
‘~/tmp/scratch/RtmpvWvWma’ ‘~/tmp/scratch/Rtmpvfj2xD’
‘~/tmp/scratch/Rtmpvg9MVu’ ‘~/tmp/scratch/Rtmpw6dRtt’
‘~/tmp/scratch/RtmpxCw5UU’ ‘~/tmp/scratch/RtmpxbicGw’
‘~/tmp/scratch/RtmpyLJM3X’ ‘~/tmp/scratch/RtmpyMEUoS’
‘~/tmp/scratch/RtmpyPqJs2’ ‘~/tmp/scratch/RtmpyXNxfY’
‘~/tmp/scratch/Rtmpz2ZIcI’ ‘~/tmp/scratch/RtmpzOYUBL’
‘~/tmp/scratch/RtmpznuHbB’ ‘~/tmp/scratch/Rtmpzw8hR1’
‘~/tmp/scratch/xvfb-run.0xeVoe’ ‘~/tmp/scratch/xvfb-run.1N6jd9’
‘~/tmp/scratch/xvfb-run.5xNfTC’ ‘~/tmp/scratch/xvfb-run.6CQe6t’
‘~/tmp/scratch/xvfb-run.7GF9iy’ ‘~/tmp/scratch/xvfb-run.7jFuye’
‘~/tmp/scratch/xvfb-run.7m0fc9’ ‘~/tmp/scratch/xvfb-run.8Z4qlZ’
‘~/tmp/scratch/xvfb-run.8g2cjp’ ‘~/tmp/scratch/xvfb-run.9FsdLv’
‘~/tmp/scratch/xvfb-run.9P7lCB’ ‘~/tmp/scratch/xvfb-run.AgzfVX’
‘~/tmp/scratch/xvfb-run.B3koXd’ ‘~/tmp/scratch/xvfb-run.CE0XnZ’
‘~/tmp/scratch/xvfb-run.D3KqdG’ ‘~/tmp/scratch/xvfb-run.EvWzLv’
‘~/tmp/scratch/xvfb-run.GnUdWk’ ‘~/tmp/scratch/xvfb-run.HNm8nm’
‘~/tmp/scratch/xvfb-run.I9m3oA’ ‘~/tmp/scratch/xvfb-run.ILDI7Y’
‘~/tmp/scratch/xvfb-run.IovS7h’ ‘~/tmp/scratch/xvfb-run.JBbnZh’
‘~/tmp/scratch/xvfb-run.Joi2Eg’ ‘~/tmp/scratch/xvfb-run.KeHn7r’
‘~/tmp/scratch/xvfb-run.LdhuoA’ ‘~/tmp/scratch/xvfb-run.MfvRs1’
‘~/tmp/scratch/xvfb-run.ORA8gD’ ‘~/tmp/scratch/xvfb-run.Q00A2R’
‘~/tmp/scratch/xvfb-run.RK7LXN’ ‘~/tmp/scratch/xvfb-run.TtMcln’
‘~/tmp/scratch/xvfb-run.VwXghs’ ‘~/tmp/scratch/xvfb-run.XMJ3Ag’
‘~/tmp/scratch/xvfb-run.Xn4p3k’ ‘~/tmp/scratch/xvfb-run.YwNiYe’
‘~/tmp/scratch/xvfb-run.ZwsHz0’ ‘~/tmp/scratch/xvfb-run.ZyzJZz’
‘~/tmp/scratch/xvfb-run.bJd6i0’ ‘~/tmp/scratch/xvfb-run.bpatu3’
‘~/tmp/scratch/xvfb-run.cUnmRl’ ‘~/tmp/scratch/xvfb-run.dJTCBB’
‘~/tmp/scratch/xvfb-run.dzw2Y2’ ‘~/tmp/scratch/xvfb-run.e3cO2C’
‘~/tmp/scratch/xvfb-run.elno84’ ‘~/tmp/scratch/xvfb-run.f9Z3al’
‘~/tmp/scratch/xvfb-run.gFcSXi’ ‘~/tmp/scratch/xvfb-run.insQLO’
‘~/tmp/scratch/xvfb-run.jFnMIf’ ‘~/tmp/scratch/xvfb-run.kfdw8G’
‘~/tmp/scratch/xvfb-run.myjhB1’ ‘~/tmp/scratch/xvfb-run.oBmCZi’
‘~/tmp/scratch/xvfb-run.ooBZiz’ ‘~/tmp/scratch/xvfb-run.oz4Fla’
‘~/tmp/scratch/xvfb-run.pXXTPT’ ‘~/tmp/scratch/xvfb-run.pcWZiZ’
‘~/tmp/scratch/xvfb-run.r0P5PE’ ‘~/tmp/scratch/xvfb-run.rUJowA’
‘~/tmp/scratch/xvfb-run.rj92Wm’ ‘~/tmp/scratch/xvfb-run.sYvsVt’
‘~/tmp/scratch/xvfb-run.tds5UH’ ‘~/tmp/scratch/xvfb-run.vbNSnE’
‘~/tmp/scratch/xvfb-run.xhynAq’ ‘~/tmp/scratch/xvfb-run.z555IQ’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.14.5
Check: tests
Result: ERROR
Running 'testthat.R' [19s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(netgwas)
Registered S3 method overwritten by 'netgwas':
method from
plot.select huge
>
> test_check("netgwas")
Constructing linkage map is in progress ...
Constructing linkage map is done.
Constructing linkage map is in progress ...
Constructing linkage map is done.
Constructing linkage map is in progress:100%
Constructing linkage map is done.
Constructing linkage map is in progress:100%
Constructing linkage map is done.
Reconstructing genotype-phenotypes networks is in progress ...
Reconstructing genotype-phenotype networks done.
Reconstructing genotype-phenotypes networks is in progress ... :100%
Reconstructing genotype-phenotypes networks done.
Reconstructing intra- and inter- chromosomal interactions network is in progress ...
Reconstructing intra- and inter- chromosomal interactions network done.
Reconstructing intra- and inter- chromosomal interactions network is in progress:100%
Reconstructing intra- and inter- chromosomal interactions network done.
Reconstructing intra- and inter- chromosomal interactions network is in progress:100%
Reconstructing intra- and inter- chromosomal interactions network done.
Reconstructing intra- and inter- chromosomal interactions network is in progress ...
Reconstructing intra- and inter- chromosomal interactions network done.
Calculating extended Bayesian information criterion (ebic) selection ...done.
Saving _problems/test_selectnet-9.R
[ FAIL 1 | WARN 122 | SKIP 0 | PASS 11 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_selectnet.R:9:13'): Model selection works fine ──────────────
Expected `sel.ebic` to equal 4.
Differences:
1/1 mismatches
[1] 3 - 4 == -1
[ FAIL 1 | WARN 122 | SKIP 0 | PASS 11 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-windows-x86_64