Last updated on 2026-08-03 07:51:22 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.9 | 34.35 | 204.62 | 238.97 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.3.9 | 25.02 | 133.93 | 158.95 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.3.9 | 57.00 | 314.68 | 371.68 | NOTE | |
| r-devel-linux-x86_64-fedora-gcc | 0.3.9 | 26.00 | 133.38 | 159.38 | NOTE | |
| r-devel-windows-x86_64 | 0.3.9 | 44.00 | 223.00 | 267.00 | NOTE | |
| r-patched-linux-x86_64 | 0.3.9 | 38.53 | 188.75 | 227.28 | OK | |
| r-release-linux-x86_64 | 0.3.9 | 34.95 | 189.29 | 224.24 | OK | |
| r-release-macos-arm64 | 0.3.9 | 8.00 | 47.00 | 55.00 | OK | |
| r-release-macos-x86_64 | 0.3.9 | 23.00 | 200.00 | 223.00 | OK | |
| r-release-windows-x86_64 | 0.3.9 | 41.00 | 258.00 | 299.00 | OK | |
| r-oldrel-macos-arm64 | 0.3.9 | 7.00 | 47.00 | 54.00 | OK | |
| r-oldrel-macos-x86_64 | 0.3.9 | 26.00 | 218.00 | 244.00 | OK | |
| r-oldrel-windows-x86_64 | 0.3.9 | 59.00 | 319.00 | 378.00 | OK |
Version: 0.3.9
Check: R code for possible problems
Result: NOTE
Found calls to structure() using deprecated special names:
metacoder/tests/testthat/test--taxmap_parsers.R (.Names: 1)
'.Names' should be changed to 'names'.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 0.3.9
Check: Rd contents
Result: NOTE
Rd files without \usage:
‘all_names.Rd’ ‘arrange_obs.Rd’ ‘arrange_taxa.Rd’ ‘branches.Rd’
‘classifications.Rd’ ‘filter_obs.Rd’ ‘filter_taxa.Rd’ ‘get_data.Rd’
‘get_data_frame.Rd’ ‘get_dataset.Rd’ ‘id_classifications.Rd’
‘internodes.Rd’ ‘is_branch.Rd’ ‘is_internode.Rd’ ‘is_leaf.Rd’
‘is_root.Rd’ ‘is_stem.Rd’ ‘leaves.Rd’ ‘leaves_apply.Rd’ ‘map_data.Rd’
‘map_data_.Rd’ ‘mutate_obs.Rd’ ‘n_leaves.Rd’ ‘n_leaves_1.Rd’
‘n_obs.Rd’ ‘n_obs_1.Rd’ ‘n_subtaxa.Rd’ ‘n_subtaxa_1.Rd’
‘n_supertaxa.Rd’ ‘n_supertaxa_1.Rd’ ‘obs.Rd’ ‘obs_apply.Rd’
‘print_tree.Rd’ ‘remove_redundant_names.Rd’ ‘replace_taxon_ids.Rd’
‘roots.Rd’ ‘sample_frac_obs.Rd’ ‘sample_frac_taxa.Rd’
‘sample_n_obs.Rd’ ‘sample_n_taxa.Rd’ ‘select_obs.Rd’ ‘stems.Rd’
‘subtaxa.Rd’ ‘subtaxa_apply.Rd’ ‘supertaxa.Rd’ ‘supertaxa_apply.Rd’
‘taxon_ids.Rd’ ‘taxon_indexes.Rd’ ‘taxon_names.Rd’ ‘taxon_ranks.Rd’
‘taxonomy_table.Rd’ ‘transmute_obs.Rd’
\arguments should not be documented without \usage.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.3.9
Check: for new files in some other directories
Result: NOTE
Found the following files/directories:
‘~/tmp/scratch/Rtmp03JPye’ ‘~/tmp/scratch/Rtmp03n73C’
‘~/tmp/scratch/Rtmp0VIerX’ ‘~/tmp/scratch/Rtmp0YEK4F’
‘~/tmp/scratch/Rtmp1NAMp4’ ‘~/tmp/scratch/Rtmp1Q18w6’
‘~/tmp/scratch/Rtmp1boFzF’ ‘~/tmp/scratch/Rtmp1tAsqG’
‘~/tmp/scratch/Rtmp1xgVZB’ ‘~/tmp/scratch/Rtmp38VYQH’
‘~/tmp/scratch/Rtmp3MX2oE’ ‘~/tmp/scratch/Rtmp3gQN0P’
‘~/tmp/scratch/Rtmp49JBfC’ ‘~/tmp/scratch/Rtmp4Fgefh’
‘~/tmp/scratch/Rtmp4b1cBt’ ‘~/tmp/scratch/Rtmp5psNaZ’
‘~/tmp/scratch/Rtmp68bsbt’ ‘~/tmp/scratch/Rtmp6CeSB9’
‘~/tmp/scratch/Rtmp6H8k5V’ ‘~/tmp/scratch/Rtmp6ryyEU’
‘~/tmp/scratch/Rtmp7p2T8X’ ‘~/tmp/scratch/Rtmp8E0aUf’
‘~/tmp/scratch/Rtmp8MdJkX’ ‘~/tmp/scratch/Rtmp8SgPi9’
‘~/tmp/scratch/Rtmp8Y49uw’ ‘~/tmp/scratch/Rtmp8zGrpk’
‘~/tmp/scratch/Rtmp9ThLGa’ ‘~/tmp/scratch/Rtmp9vUKye’
‘~/tmp/scratch/RtmpAJHGK8’ ‘~/tmp/scratch/RtmpAg1Bma’
‘~/tmp/scratch/RtmpAroA43’ ‘~/tmp/scratch/RtmpAwFIS8’
‘~/tmp/scratch/RtmpAyUzwh’ ‘~/tmp/scratch/RtmpBJ9gS5’
‘~/tmp/scratch/RtmpBWsOx3’ ‘~/tmp/scratch/RtmpBg5X6t’
‘~/tmp/scratch/RtmpC1ny9O’ ‘~/tmp/scratch/RtmpCQY2JI’
‘~/tmp/scratch/RtmpCcWq8F’ ‘~/tmp/scratch/RtmpCz0IXe’
‘~/tmp/scratch/RtmpCzYQC7’ ‘~/tmp/scratch/RtmpD81Y16’
‘~/tmp/scratch/RtmpDeyatx’ ‘~/tmp/scratch/RtmpE8sw64’
‘~/tmp/scratch/RtmpEGIBix’ ‘~/tmp/scratch/RtmpEctQU8’
‘~/tmp/scratch/RtmpFYE1F3’ ‘~/tmp/scratch/RtmpFlKKDP’
‘~/tmp/scratch/RtmpFnRSV8’ ‘~/tmp/scratch/RtmpGO3zXI’
‘~/tmp/scratch/RtmpGZF0d3’ ‘~/tmp/scratch/RtmpHQo2wE’
‘~/tmp/scratch/RtmpHRDeVP’ ‘~/tmp/scratch/RtmpI4flmD’
‘~/tmp/scratch/RtmpIZy5EJ’ ‘~/tmp/scratch/RtmpIq4tYP’
‘~/tmp/scratch/RtmpJ3EEzh’ ‘~/tmp/scratch/RtmpJejAmq’
‘~/tmp/scratch/RtmpKzkdPF’ ‘~/tmp/scratch/RtmpL6L3rR’
‘~/tmp/scratch/RtmpLUlIY5’ ‘~/tmp/scratch/RtmpLZkfeR’
‘~/tmp/scratch/RtmpLfR1g9’ ‘~/tmp/scratch/RtmpMIVQNb’
‘~/tmp/scratch/RtmpNJKoDN’ ‘~/tmp/scratch/RtmpNK11fk’
‘~/tmp/scratch/RtmpNM9jgq’ ‘~/tmp/scratch/RtmpOWZpiE’
‘~/tmp/scratch/RtmpOcfWD2’ ‘~/tmp/scratch/RtmpOhumda’
‘~/tmp/scratch/RtmpOneeug’ ‘~/tmp/scratch/RtmpPFsXC6’
‘~/tmp/scratch/RtmpPJBX6h’ ‘~/tmp/scratch/RtmpPxZc68’
‘~/tmp/scratch/RtmpQv904P’ ‘~/tmp/scratch/RtmpR2RfWO’
‘~/tmp/scratch/RtmpRbEio4’ ‘~/tmp/scratch/RtmpRhj1MB’
‘~/tmp/scratch/RtmpRs9zgh’ ‘~/tmp/scratch/RtmpRtSVXe’
‘~/tmp/scratch/RtmpSaajTR’ ‘~/tmp/scratch/RtmpT25mRS’
‘~/tmp/scratch/RtmpTk06dP’ ‘~/tmp/scratch/RtmpU9QlwA’
‘~/tmp/scratch/RtmpUalzyA’ ‘~/tmp/scratch/RtmpUpdUuh’
‘~/tmp/scratch/RtmpUrV3KL’ ‘~/tmp/scratch/RtmpUtIB5R’
‘~/tmp/scratch/RtmpUvdLZU’ ‘~/tmp/scratch/RtmpV01KNl’
‘~/tmp/scratch/RtmpV5myPq’ ‘~/tmp/scratch/RtmpVQHwUY’
‘~/tmp/scratch/RtmpVTt8H0’ ‘~/tmp/scratch/RtmpVXo4Ye’
‘~/tmp/scratch/RtmpVZlUHG’ ‘~/tmp/scratch/RtmpViiDd5’
‘~/tmp/scratch/RtmpW6qIrc’ ‘~/tmp/scratch/RtmpWCgh0B’
‘~/tmp/scratch/RtmpWqjcUc’ ‘~/tmp/scratch/RtmpWv61L8’
‘~/tmp/scratch/RtmpX0B289’ ‘~/tmp/scratch/RtmpX6fRps’
‘~/tmp/scratch/RtmpXLR0tH’ ‘~/tmp/scratch/RtmpXVP39m’
‘~/tmp/scratch/RtmpXZdEOR’ ‘~/tmp/scratch/RtmpYBaIt2’
‘~/tmp/scratch/RtmpYK31b8’ ‘~/tmp/scratch/RtmpYlxrRr’
‘~/tmp/scratch/RtmpZizsNc’ ‘~/tmp/scratch/RtmpZsSxy5’
‘~/tmp/scratch/RtmpafBnCz’ ‘~/tmp/scratch/RtmpalboZB’
‘~/tmp/scratch/Rtmpaqm7Tw’ ‘~/tmp/scratch/RtmpbAmmKe’
‘~/tmp/scratch/RtmpblVIKP’ ‘~/tmp/scratch/Rtmpc7MBuA’
‘~/tmp/scratch/RtmpcP97m0’ ‘~/tmp/scratch/RtmpcSoMws’
‘~/tmp/scratch/Rtmpd3QSiR’ ‘~/tmp/scratch/RtmpeFZPzw’
‘~/tmp/scratch/RtmpefeW2V’ ‘~/tmp/scratch/Rtmpevrai7’
‘~/tmp/scratch/RtmpfFFJUe’ ‘~/tmp/scratch/RtmpfUXvct’
‘~/tmp/scratch/RtmpgApmnL’ ‘~/tmp/scratch/RtmpgD7FfZ’
‘~/tmp/scratch/RtmpgQZVdR’ ‘~/tmp/scratch/RtmphLIBNx’
‘~/tmp/scratch/RtmphOd5rD’ ‘~/tmp/scratch/RtmphSDHng’
‘~/tmp/scratch/Rtmpis3i0F’ ‘~/tmp/scratch/RtmpisKgJP’
‘~/tmp/scratch/RtmpkhbOhS’ ‘~/tmp/scratch/Rtmpky8ERl’
‘~/tmp/scratch/Rtmpl49v79’ ‘~/tmp/scratch/Rtmpm6iQbk’
‘~/tmp/scratch/RtmpmDZoVA’ ‘~/tmp/scratch/RtmpmFQ2lX’
‘~/tmp/scratch/RtmpmHvi3w’ ‘~/tmp/scratch/RtmpmLiAcT’
‘~/tmp/scratch/RtmpmcxHNA’ ‘~/tmp/scratch/RtmpmjJGw2’
‘~/tmp/scratch/Rtmpmsm0tq’ ‘~/tmp/scratch/RtmpnBYDXw’
‘~/tmp/scratch/RtmpndN4N3’ ‘~/tmp/scratch/RtmpoasQ0T’
‘~/tmp/scratch/RtmppELf4T’ ‘~/tmp/scratch/RtmppNxYfE’
‘~/tmp/scratch/RtmpqG4tIp’ ‘~/tmp/scratch/RtmpqQ2iNp’
‘~/tmp/scratch/RtmpqqiJwN’ ‘~/tmp/scratch/RtmprcfHrB’
‘~/tmp/scratch/RtmptUF4UM’ ‘~/tmp/scratch/RtmpuDRwPT’
‘~/tmp/scratch/RtmpuEF2BQ’ ‘~/tmp/scratch/RtmpuR4Spb’
‘~/tmp/scratch/RtmpujuDeu’ ‘~/tmp/scratch/RtmpulzmTe’
‘~/tmp/scratch/RtmpuuYbFc’ ‘~/tmp/scratch/RtmpvAqc2P’
‘~/tmp/scratch/RtmpvI5jtV’ ‘~/tmp/scratch/RtmpvhyXrE’
‘~/tmp/scratch/RtmpvsLoaQ’ ‘~/tmp/scratch/RtmpwBz7JZ’
‘~/tmp/scratch/RtmpwKUx5v’ ‘~/tmp/scratch/RtmpwRoFLu’
‘~/tmp/scratch/RtmpxPR7AM’ ‘~/tmp/scratch/RtmpxWCqrz’
‘~/tmp/scratch/RtmpyPaJtu’ ‘~/tmp/scratch/RtmpyiCUrW’
‘~/tmp/scratch/Rtmpz55QIs’ ‘~/tmp/scratch/Rtmpzjgcuf’
‘~/tmp/scratch/RtmpzjloUv’ ‘~/tmp/scratch/ccVbE2Zy.s’
‘~/tmp/scratch/xvfb-run.083x3H’ ‘~/tmp/scratch/xvfb-run.0cn1Cs’
‘~/tmp/scratch/xvfb-run.1PFc0I’ ‘~/tmp/scratch/xvfb-run.1TP2CJ’
‘~/tmp/scratch/xvfb-run.3ZDk9M’ ‘~/tmp/scratch/xvfb-run.3lnu9i’
‘~/tmp/scratch/xvfb-run.8Us4am’ ‘~/tmp/scratch/xvfb-run.9dFJC7’
‘~/tmp/scratch/xvfb-run.A54ctx’ ‘~/tmp/scratch/xvfb-run.DfKwY6’
‘~/tmp/scratch/xvfb-run.DwU9Kq’ ‘~/tmp/scratch/xvfb-run.F8uYOj’
‘~/tmp/scratch/xvfb-run.FRZfop’ ‘~/tmp/scratch/xvfb-run.Flp76P’
‘~/tmp/scratch/xvfb-run.GCmTm2’ ‘~/tmp/scratch/xvfb-run.GLNsBH’
‘~/tmp/scratch/xvfb-run.GfRioB’ ‘~/tmp/scratch/xvfb-run.HeNOgP’
‘~/tmp/scratch/xvfb-run.JyDTVF’ ‘~/tmp/scratch/xvfb-run.K8ITJL’
‘~/tmp/scratch/xvfb-run.KHvEaX’ ‘~/tmp/scratch/xvfb-run.LCSR5b’
‘~/tmp/scratch/xvfb-run.NI3uuG’ ‘~/tmp/scratch/xvfb-run.O6I0ya’
‘~/tmp/scratch/xvfb-run.OYIktm’ ‘~/tmp/scratch/xvfb-run.RLEwp5’
‘~/tmp/scratch/xvfb-run.Rn2cfx’ ‘~/tmp/scratch/xvfb-run.RuRYsw’
‘~/tmp/scratch/xvfb-run.SyIEQU’ ‘~/tmp/scratch/xvfb-run.TSwnEb’
‘~/tmp/scratch/xvfb-run.XdV53y’ ‘~/tmp/scratch/xvfb-run.XlQg6V’
‘~/tmp/scratch/xvfb-run.YApHV7’ ‘~/tmp/scratch/xvfb-run.Z6arZi’
‘~/tmp/scratch/xvfb-run.ZKFLem’ ‘~/tmp/scratch/xvfb-run.Zw5DDN’
‘~/tmp/scratch/xvfb-run.aJahI1’ ‘~/tmp/scratch/xvfb-run.bpZoYE’
‘~/tmp/scratch/xvfb-run.dWJvJQ’ ‘~/tmp/scratch/xvfb-run.fZOjUO’
‘~/tmp/scratch/xvfb-run.gR11bv’ ‘~/tmp/scratch/xvfb-run.hCFc5q’
‘~/tmp/scratch/xvfb-run.hHdUcZ’ ‘~/tmp/scratch/xvfb-run.hMb9aG’
‘~/tmp/scratch/xvfb-run.hf3bmu’ ‘~/tmp/scratch/xvfb-run.idyNJU’
‘~/tmp/scratch/xvfb-run.j0QZXK’ ‘~/tmp/scratch/xvfb-run.kA8hMg’
‘~/tmp/scratch/xvfb-run.klhvnS’ ‘~/tmp/scratch/xvfb-run.nkklM2’
‘~/tmp/scratch/xvfb-run.nsfsUm’ ‘~/tmp/scratch/xvfb-run.oM0SHA’
‘~/tmp/scratch/xvfb-run.opWEk5’ ‘~/tmp/scratch/xvfb-run.qEOeRu’
‘~/tmp/scratch/xvfb-run.qKHpsk’ ‘~/tmp/scratch/xvfb-run.rI1OsM’
‘~/tmp/scratch/xvfb-run.rnEkzw’ ‘~/tmp/scratch/xvfb-run.sxQIwI’
‘~/tmp/scratch/xvfb-run.syp1fD’ ‘~/tmp/scratch/xvfb-run.ubqNdj’
‘~/tmp/scratch/xvfb-run.vUJMe0’ ‘~/tmp/scratch/xvfb-run.xAIpey’
‘~/tmp/scratch/xvfb-run.xW9c6N’ ‘~/tmp/scratch/xvfb-run.xYSBnn’
‘~/tmp/scratch/xvfb-run.xf7INB’ ‘~/tmp/scratch/xvfb-run.yATsud’
‘~/tmp/scratch/xvfb-run.yRwYXS’ ‘~/tmp/scratch/xvfb-run.ySgOip’
‘~/tmp/scratch/xvfb-run.zix6kc’ ‘~/tmp/scratch/xvfb-run.zwv8FN’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.3.9
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘R6’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc