Last updated on 2026-08-02 23:50:29 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.3 | 47.50 | 407.70 | 455.20 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.2.3 | 35.09 | 272.45 | 307.54 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.2.3 | 85.00 | 621.94 | 706.94 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.2.3 | 35.00 | 263.57 | 298.57 | OK | |
| r-devel-windows-x86_64 | 1.2.3 | 56.00 | 404.00 | 460.00 | OK | |
| r-patched-linux-x86_64 | 1.2.3 | 49.75 | 388.60 | 438.35 | OK | |
| r-release-linux-x86_64 | 1.2.3 | 45.72 | 396.62 | 442.34 | OK | |
| r-release-macos-arm64 | 1.2.3 | 11.00 | 82.00 | 93.00 | OK | |
| r-release-macos-x86_64 | 1.2.3 | 33.00 | 361.00 | 394.00 | OK | |
| r-release-windows-x86_64 | 1.2.3 | 52.00 | 438.00 | 490.00 | OK | |
| r-oldrel-macos-arm64 | 1.2.3 | 9.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 1.2.3 | 35.00 | 445.00 | 480.00 | ERROR | |
| r-oldrel-windows-x86_64 | 1.2.3 | 75.00 | 565.00 | 640.00 | OK |
Version: 1.2.3
Check: for new files in some other directories
Result: NOTE
Found the following files/directories:
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‘~/tmp/scratch/Rtmp33ZVnp’ ‘~/tmp/scratch/Rtmp3Ch4QF’
‘~/tmp/scratch/Rtmp3LRiKj’ ‘~/tmp/scratch/Rtmp3SObNZ’
‘~/tmp/scratch/Rtmp3a9UQr’ ‘~/tmp/scratch/Rtmp3bft5w’
‘~/tmp/scratch/Rtmp3gz0yw’ ‘~/tmp/scratch/Rtmp4BRJhR’
‘~/tmp/scratch/Rtmp4F5eVg’ ‘~/tmp/scratch/Rtmp4Nsccz’
‘~/tmp/scratch/Rtmp4zWyzv’ ‘~/tmp/scratch/Rtmp5GtaBJ’
‘~/tmp/scratch/Rtmp5MnFer’ ‘~/tmp/scratch/Rtmp5Ys1Tg’
‘~/tmp/scratch/Rtmp5ZBNwh’ ‘~/tmp/scratch/Rtmp5fAnK2’
‘~/tmp/scratch/Rtmp6586UT’ ‘~/tmp/scratch/Rtmp7MKnYa’
‘~/tmp/scratch/Rtmp7T6tEN’ ‘~/tmp/scratch/Rtmp8YLzE2’
‘~/tmp/scratch/Rtmp8mDb50’ ‘~/tmp/scratch/Rtmp9I6Uih’
‘~/tmp/scratch/RtmpA33rDw’ ‘~/tmp/scratch/RtmpAF4CqD’
‘~/tmp/scratch/RtmpCaLtfW’ ‘~/tmp/scratch/RtmpCzAOOj’
‘~/tmp/scratch/RtmpDHr94M’ ‘~/tmp/scratch/RtmpDiEoYp’
‘~/tmp/scratch/RtmpEimvUZ’ ‘~/tmp/scratch/RtmpErRQXk’
‘~/tmp/scratch/RtmpEuHPEg’ ‘~/tmp/scratch/RtmpG1GlQd’
‘~/tmp/scratch/RtmpG6VYoE’ ‘~/tmp/scratch/RtmpGVPPxx’
‘~/tmp/scratch/RtmpGYPt0Z’ ‘~/tmp/scratch/RtmpGaWO75’
‘~/tmp/scratch/RtmpGexPxr’ ‘~/tmp/scratch/RtmpGwm4Tw’
‘~/tmp/scratch/RtmpGzz9IU’ ‘~/tmp/scratch/RtmpH9Xypd’
‘~/tmp/scratch/RtmpHAd2VK’ ‘~/tmp/scratch/RtmpHD3Qjp’
‘~/tmp/scratch/RtmpHGUJZC’ ‘~/tmp/scratch/RtmpHYI9AR’
‘~/tmp/scratch/RtmpHiuDH6’ ‘~/tmp/scratch/RtmpHnSiPR’
‘~/tmp/scratch/RtmpHp7o5n’ ‘~/tmp/scratch/RtmpHpz4Jl’
‘~/tmp/scratch/RtmpIDn1SV’ ‘~/tmp/scratch/RtmpIbKaPx’
‘~/tmp/scratch/RtmpIeZ41m’ ‘~/tmp/scratch/RtmpIhq2Op’
‘~/tmp/scratch/RtmpIqyU9E’ ‘~/tmp/scratch/RtmpJ7VoD9’
‘~/tmp/scratch/RtmpJKIiet’ ‘~/tmp/scratch/RtmpJgHz3B’
‘~/tmp/scratch/RtmpKt7UWH’ ‘~/tmp/scratch/RtmpLMA2yz’
‘~/tmp/scratch/RtmpM2xQr5’ ‘~/tmp/scratch/RtmpNDtcYZ’
‘~/tmp/scratch/RtmpNUsds6’ ‘~/tmp/scratch/RtmpNXxvr4’
‘~/tmp/scratch/RtmpODAOh3’ ‘~/tmp/scratch/RtmpOyqeGD’
‘~/tmp/scratch/RtmpQ9vCwN’ ‘~/tmp/scratch/RtmpQUbWXq’
‘~/tmp/scratch/RtmpQY5pfW’ ‘~/tmp/scratch/RtmpQl1vfJ’
‘~/tmp/scratch/RtmpR8FdYb’ ‘~/tmp/scratch/RtmpRE2EHX’
‘~/tmp/scratch/RtmpRNSSeH’ ‘~/tmp/scratch/RtmpSEnjWL’
‘~/tmp/scratch/RtmpShx1ZH’ ‘~/tmp/scratch/RtmpTNX2Nc’
‘~/tmp/scratch/RtmpTYeP19’ ‘~/tmp/scratch/RtmpTaXjJM’
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‘~/tmp/scratch/RtmpUKH80N’ ‘~/tmp/scratch/RtmpULbMfB’
‘~/tmp/scratch/RtmpUSxLOv’ ‘~/tmp/scratch/RtmpUeNBLG’
‘~/tmp/scratch/RtmpVHPEhu’ ‘~/tmp/scratch/RtmpVbxer8’
‘~/tmp/scratch/RtmpWIT4jz’ ‘~/tmp/scratch/RtmpWVSuMD’
‘~/tmp/scratch/RtmpWaTx2d’ ‘~/tmp/scratch/RtmpWqFnOy’
‘~/tmp/scratch/RtmpWxheBb’ ‘~/tmp/scratch/RtmpX9Mllt’
‘~/tmp/scratch/RtmpXBknT4’ ‘~/tmp/scratch/RtmpXIlUkA’
‘~/tmp/scratch/RtmpXs3ISZ’ ‘~/tmp/scratch/RtmpXxRu7R’
‘~/tmp/scratch/RtmpYDnCBj’ ‘~/tmp/scratch/RtmpYc9QlS’
‘~/tmp/scratch/RtmpYmIhlf’ ‘~/tmp/scratch/RtmpYn1Rww’
‘~/tmp/scratch/RtmpZBy0iu’ ‘~/tmp/scratch/RtmpZGFvQP’
‘~/tmp/scratch/RtmpZRTrKF’ ‘~/tmp/scratch/RtmpZTYpdK’
‘~/tmp/scratch/RtmpZTlHBE’ ‘~/tmp/scratch/Rtmpa20YU3’
‘~/tmp/scratch/RtmpaNMhPa’ ‘~/tmp/scratch/RtmpaaJxX9’
‘~/tmp/scratch/RtmpbB3JtS’ ‘~/tmp/scratch/RtmpbH71JG’
‘~/tmp/scratch/RtmpbpsK9M’ ‘~/tmp/scratch/Rtmpc5KPUp’
‘~/tmp/scratch/Rtmpc6pXOR’ ‘~/tmp/scratch/Rtmpc8xCFN’
‘~/tmp/scratch/Rtmpd1iKVp’ ‘~/tmp/scratch/Rtmpd8qk9L’
‘~/tmp/scratch/RtmpdAuM6A’ ‘~/tmp/scratch/RtmpdJZOw3’
‘~/tmp/scratch/RtmpdSlPpk’ ‘~/tmp/scratch/RtmpdWDjCM’
‘~/tmp/scratch/RtmpdxGYv4’ ‘~/tmp/scratch/RtmpexTtrM’
‘~/tmp/scratch/RtmpfBlHaK’ ‘~/tmp/scratch/RtmpfJvSsS’
‘~/tmp/scratch/Rtmpfsmv9T’ ‘~/tmp/scratch/RtmpfuSsxZ’
‘~/tmp/scratch/RtmpggR6Mv’ ‘~/tmp/scratch/RtmpgyNA99’
‘~/tmp/scratch/RtmphMkeb6’ ‘~/tmp/scratch/RtmphSOg1T’
‘~/tmp/scratch/RtmphwWIs7’ ‘~/tmp/scratch/Rtmpi9MFDn’
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‘~/tmp/scratch/RtmpjCODOr’ ‘~/tmp/scratch/RtmpjMGmNb’
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‘~/tmp/scratch/RtmplPKjh7’ ‘~/tmp/scratch/Rtmpld3je1’
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‘~/tmp/scratch/RtmpnWS2WO’ ‘~/tmp/scratch/RtmpnkemCL’
‘~/tmp/scratch/RtmpnoRctM’ ‘~/tmp/scratch/RtmpntZCmZ’
‘~/tmp/scratch/RtmpoPklXq’ ‘~/tmp/scratch/RtmpopXRl5’
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‘~/tmp/scratch/Rtmpq4suVF’ ‘~/tmp/scratch/RtmpqsdAs8’
‘~/tmp/scratch/RtmpsgiVoF’ ‘~/tmp/scratch/RtmpsptYhZ’
‘~/tmp/scratch/RtmptC8xY7’ ‘~/tmp/scratch/RtmptNINuE’
‘~/tmp/scratch/RtmpuAEnF5’ ‘~/tmp/scratch/RtmpufMpg6’
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‘~/tmp/scratch/Rtmpxmj9ne’ ‘~/tmp/scratch/Rtmpxuj97z’
‘~/tmp/scratch/Rtmpy2v2G5’ ‘~/tmp/scratch/RtmpzxObzh’
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‘~/tmp/scratch/xvfb-run.A427Rk’ ‘~/tmp/scratch/xvfb-run.AGnIVR’
‘~/tmp/scratch/xvfb-run.CCxyKY’ ‘~/tmp/scratch/xvfb-run.D4IjHx’
‘~/tmp/scratch/xvfb-run.DRjxv3’ ‘~/tmp/scratch/xvfb-run.DkrUIv’
‘~/tmp/scratch/xvfb-run.HjjVEz’ ‘~/tmp/scratch/xvfb-run.ISdrgY’
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‘~/tmp/scratch/xvfb-run.VFwKo2’ ‘~/tmp/scratch/xvfb-run.X864Xf’
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‘~/tmp/scratch/xvfb-run.Y1GEj9’ ‘~/tmp/scratch/xvfb-run.YimuOD’
‘~/tmp/scratch/xvfb-run.Zga7oJ’ ‘~/tmp/scratch/xvfb-run.ZvFaAW’
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‘~/tmp/scratch/xvfb-run.kRQNf1’ ‘~/tmp/scratch/xvfb-run.kvODIw’
‘~/tmp/scratch/xvfb-run.kyvIwZ’ ‘~/tmp/scratch/xvfb-run.mKCtxe’
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‘~/tmp/scratch/xvfb-run.r6GM2F’ ‘~/tmp/scratch/xvfb-run.sOiRbl’
‘~/tmp/scratch/xvfb-run.t4fQqk’ ‘~/tmp/scratch/xvfb-run.uFEEOX’
‘~/tmp/scratch/xvfb-run.urlLwb’ ‘~/tmp/scratch/xvfb-run.v3Z4be’
‘~/tmp/scratch/xvfb-run.vz8yOw’ ‘~/tmp/scratch/xvfb-run.wLTgXl’
‘~/tmp/scratch/xvfb-run.wsC1pW’ ‘~/tmp/scratch/xvfb-run.xeVLON’
‘~/tmp/scratch/xvfb-run.ybbO3P’ ‘~/tmp/scratch/xvfb-run.zEsAjJ’
‘/dev/shm/shd33da51_6a6f51ff_6a6f520e’
‘/dev/shm/shd33da51_6a6f5201_6a6f521c’
‘/dev/shm/shd33da51_6a6f5202_6a6f521d’
‘/dev/shm/shd33da51_6a6f5202_6a6f521e’
‘/dev/shm/shd33da51_6a6f5202_6a6f521f’
‘/dev/shm/shd33da51_6a6f5202_6a6f5220’
‘/dev/shm/shd33da51_6a6f5202_6a6f5221’
‘/dev/shm/shd33da51_6a6f5202_6a6f5222’
‘/dev/shm/shd33da51_6a6f5202_6a6f5223’
‘/dev/shm/shd33da51_6a6f5202_6a6f5224’
‘/dev/shm/shd33da51_6a6f5203_6a6f522a’
‘/dev/shm/shd33da51_6a6f5203_6a6f522c’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.2.3
Check: package dependencies
Result: ERROR
Packages required but not available: 'SNPRelate', 'snpStats'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-oldrel-macos-arm64
Version: 1.2.3
Check: examples
Result: ERROR
Running examples in ‘dartR.base-Ex.R’ failed
The error most likely occurred in:
> ### Name: gl.filter.ld
> ### Title: Filters loci based on linkage disequilibrium (LD)
> ### Aliases: gl.filter.ld
>
> ### ** Examples
>
> if ((requireNamespace("snpStats", quietly = TRUE)) & (requireNamespace("fields", quietly = TRUE))) {
+ test <- gl.filter.callrate(platypus.gl, threshold = 1)
+ test <- gl.filter.monomorphs(test)
+ report <- gl.report.ld.map(test)
+ res <- gl.filter.ld(x=test,ld.report = report)
+ }
Starting gl.filter.callrate
Processing genlight object with SNP data
Warning: data include loci that are scored NA across all individuals.
Consider filtering using gl <- gl.filter.allna(gl)
Warning: Data may include monomorphic loci in call rate
calculations for filtering
Recalculating Call Rate
Removing loci based on Call Rate, threshold = 1
Completed: gl.filter.callrate
Starting gl.filter.monomorphs
Processing genlight object with SNP data
Identifying monomorphic loci
Removing monomorphic loci and loci with all missing
data
Completed: gl.filter.monomorphs
Starting gl.report.ld.map
Processing genlight object with SNP data
There is no information in the chromosome/position slot of the genlight object.
Assigning the same chromosome ('1') to all the SNPs in the dataset.
Assigning a sequence from 1 to n loci as the position of each SNP.
Calculating LD for all possible SNP pair combinations Calculating pairwise LD in population SEVERN_ABOVE
*** caught segfault ***
address 0x1, cause 'memory not mapped'
Traceback:
1: snpStats::ld(genotype_loci, genotype_loci, stats = ld.stat)
2: gl.report.ld.map(test)
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-oldrel-macos-x86_64