Last updated on 2026-07-13 12:51:40 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.8.10 | 13.48 | 203.24 | 216.72 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.8.10 | 9.68 | 143.13 | 152.81 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.8.10 | 21.00 | 318.86 | 339.86 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.8.10 | 20.00 | 312.19 | 332.19 | ERROR | |
| r-devel-windows-x86_64 | 0.8.10 | 16.00 | 184.00 | 200.00 | OK | |
| r-patched-linux-x86_64 | 0.8.10 | 13.88 | 188.67 | 202.55 | OK | |
| r-release-linux-x86_64 | 0.8.10 | 12.56 | 190.12 | 202.68 | OK | |
| r-release-macos-arm64 | 0.8.10 | 3.00 | 47.00 | 50.00 | OK | |
| r-release-macos-x86_64 | 0.8.10 | 9.00 | 206.00 | 215.00 | OK | |
| r-release-windows-x86_64 | 0.8.10 | 15.00 | 186.00 | 201.00 | OK | |
| r-oldrel-macos-arm64 | 0.8.10 | OK | ||||
| r-oldrel-macos-x86_64 | 0.8.10 | 10.00 | 304.00 | 314.00 | OK | |
| r-oldrel-windows-x86_64 | 0.8.10 | 21.00 | 242.00 | 263.00 | OK |
Version: 0.8.10
Check: tests
Result: ERROR
Running ‘test-all.R’ [66s/112s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library(testthat)
>
> #options(Ncpus = parallelly::availableCores(omit = 1))
> #options(Ncpus = 1)
> options(lifecycle_verbosity = "warning")
> test_check("breathtestcore")
Loading required package: breathtestcore
Starting 2 test processes.
Saving _problems/test_plot_breathtestfit-5.R
Saving _problems/test_plot_breathtestfit-16.R
Saving _problems/test_plot_breathtestfit-25.R
Saving _problems/test_plot_breathtestfit-37.R
Saving _problems/test_plot_breathtestfit-74.R
Saving _problems/test_plot_breathtestfit-90.R
[ FAIL 6 | WARN 16 | SKIP 4 | PASS 343 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• On CRAN (4): 'test_coef_by_group.R:55:3', 'test_coef_diff_by_group.R:54:3',
'test_plot_breathtestfit.R:49:3', 'test_read_iris_csv.R:49:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_plot_breathtestfit.R:5:3'): Plot layers match expectations ─────
Error in `structure(c(188, -0.026, -2.04, -0.026, 7.74e-06, 0.000477, -2.04, 0.000477, 0.182), .Dim = c(3L, 3L), .Dimnames = list(c("m", "k", "beta"), c("m", "k", "beta")))`: (converted from warning) Replacing special names '.Dim', '.Dimnames' is deprecated; use 'dim', 'dimnames' instead.
Backtrace:
▆
1. ├─breathtestcore::cleanup_data(simulate_breathtest_data(seed = 100)$data) at test_plot_breathtestfit.R:5:3
2. └─breathtestcore::simulate_breathtest_data(seed = 100)
3. └─base::structure(...)
4. └─base::.Deprecated(...)
5. └─base::warning(...)
6. └─base::withRestarts(...)
7. └─base (local) withOneRestart(expr, restarts[[1L]])
8. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_plot_breathtestfit.R:16:3'): Failed nlme fit plots data only ───
Error in `structure(c(188, -0.026, -2.04, -0.026, 7.74e-06, 0.000477, -2.04, 0.000477, 0.182), .Dim = c(3L, 3L), .Dimnames = list(c("m", "k", "beta"), c("m", "k", "beta")))`: (converted from warning) Replacing special names '.Dim', '.Dimnames' is deprecated; use 'dim', 'dimnames' instead.
Backtrace:
▆
1. ├─breathtestcore::cleanup_data(simulate_breathtest_data(seed = 100)$data) at test_plot_breathtestfit.R:16:3
2. └─breathtestcore::simulate_breathtest_data(seed = 100)
3. └─base::structure(...)
4. └─base::.Deprecated(...)
5. └─base::warning(...)
6. └─base::withRestarts(...)
7. └─base (local) withOneRestart(expr, restarts[[1L]])
8. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_plot_breathtestfit.R:25:3'): Successful nlme fit plots data and fit ──
Error in `structure(c(188, -0.026, -2.04, -0.026, 7.74e-06, 0.000477, -2.04, 0.000477, 0.182), .Dim = c(3L, 3L), .Dimnames = list(c("m", "k", "beta"), c("m", "k", "beta")))`: (converted from warning) Replacing special names '.Dim', '.Dimnames' is deprecated; use 'dim', 'dimnames' instead.
Backtrace:
▆
1. ├─breathtestcore::cleanup_data(simulate_breathtest_data()$data) at test_plot_breathtestfit.R:25:3
2. └─breathtestcore::simulate_breathtest_data()
3. └─base::structure(...)
4. └─base::.Deprecated(...)
5. └─base::warning(...)
6. └─base::withRestarts(...)
7. └─base (local) withOneRestart(expr, restarts[[1L]])
8. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_plot_breathtestfit.R:34:3'): Plot multiple groups with repeats ──
Error in `structure(c(188, -0.026, -2.04, -0.026, 7.74e-06, 0.000477, -2.04, 0.000477, 0.182), .Dim = c(3L, 3L), .Dimnames = list(c("m", "k", "beta"), c("m", "k", "beta")))`: (converted from warning) Replacing special names '.Dim', '.Dimnames' is deprecated; use 'dim', 'dimnames' instead.
Backtrace:
▆
1. └─breathtestcore::simulate_breathtest_data(n_records = 6, seed = 100) at test_plot_breathtestfit.R:34:3
2. └─base::structure(...)
3. └─base::.Deprecated(...)
4. └─base::warning(...)
5. └─base::withRestarts(...)
6. └─base (local) withOneRestart(expr, restarts[[1L]])
7. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_plot_breathtestfit.R:71:3'): Plot multiple groups data only (no fit) ──
Error in `structure(c(188, -0.026, -2.04, -0.026, 7.74e-06, 0.000477, -2.04, 0.000477, 0.182), .Dim = c(3L, 3L), .Dimnames = list(c("m", "k", "beta"), c("m", "k", "beta")))`: (converted from warning) Replacing special names '.Dim', '.Dimnames' is deprecated; use 'dim', 'dimnames' instead.
Backtrace:
▆
1. └─breathtestcore::simulate_breathtest_data(n_records = 6, seed = 100) at test_plot_breathtestfit.R:71:3
2. └─base::structure(...)
3. └─base::.Deprecated(...)
4. └─base::warning(...)
5. └─base::withRestarts(...)
6. └─base (local) withOneRestart(expr, restarts[[1L]])
7. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_plot_breathtestfit.R:87:3'): Can plot a breathtestdata class ───
Error in `structure(c(188, -0.026, -2.04, -0.026, 7.74e-06, 0.000477, -2.04, 0.000477, 0.182), .Dim = c(3L, 3L), .Dimnames = list(c("m", "k", "beta"), c("m", "k", "beta")))`: (converted from warning) Replacing special names '.Dim', '.Dimnames' is deprecated; use 'dim', 'dimnames' instead.
Backtrace:
▆
1. └─breathtestcore::simulate_breathtest_data(n_records = 6, seed = 100) at test_plot_breathtestfit.R:87:3
2. └─base::structure(...)
3. └─base::.Deprecated(...)
4. └─base::warning(...)
5. └─base::withRestarts(...)
6. └─base (local) withOneRestart(expr, restarts[[1L]])
7. └─base (local) doWithOneRestart(return(expr), restart)
[ FAIL 6 | WARN 16 | SKIP 4 | PASS 343 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.8.10
Check: tests
Result: ERROR
Running ‘test-all.R’ [67s/52s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library(testthat)
>
> #options(Ncpus = parallelly::availableCores(omit = 1))
> #options(Ncpus = 1)
> options(lifecycle_verbosity = "warning")
> test_check("breathtestcore")
Loading required package: breathtestcore
Starting 2 test processes.
Saving _problems/test_simulate_breathtest_data-14.R
Saving _problems/test_simulate_breathtest_data-20.R
Saving _problems/test_simulate_breathtest_data-58.R
Saving _problems/test_simulate_breathtest_data-65.R
[ FAIL 4 | WARN 19 | SKIP 4 | PASS 345 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• On CRAN (4): 'test_coef_by_group.R:55:3', 'test_coef_diff_by_group.R:54:3',
'test_read_iris_csv.R:49:3', 'test_plot_breathtestfit.R:49:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_simulate_breathtest_data.R:14:3'): Dubious parameter give warning ──
Error in `simulate_breathtest_data(noise = 0)`: (converted from warning) With noise == 0, non-linear fits might fail.
Backtrace:
▆
1. ├─testthat::expect_warning(simulate_breathtest_data(noise = 0)) at test_simulate_breathtest_data.R:14:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─breathtestcore::simulate_breathtest_data(noise = 0)
── Error ('test_simulate_breathtest_data.R:20:3'): Valid parameters without std return valid data with cov-matrix ──
Error in `structure(c(188, -0.026, -2.04, -0.026, 7.74e-06, 0.000477, -2.04, 0.000477, 0.182), .Dim = c(3L, 3L), .Dimnames = list(c("m", "k", "beta"), c("m", "k", "beta")))`: (converted from warning) Replacing special names '.Dim', '.Dimnames' is deprecated; use 'dim', 'dimnames' instead.
Backtrace:
▆
1. └─breathtestcore::simulate_breathtest_data(seed = 4711) at test_simulate_breathtest_data.R:20:3
2. └─base::structure(...)
3. └─base::.Deprecated(...)
4. └─base::warning(...)
5. └─base::withRestarts(...)
6. └─base (local) withOneRestart(expr, restarts[[1L]])
7. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_simulate_breathtest_data.R:58:3'): Fewer data with missing values ──
Error in `structure(c(188, -0.026, -2.04, -0.026, 7.74e-06, 0.000477, -2.04, 0.000477, 0.182), .Dim = c(3L, 3L), .Dimnames = list(c("m", "k", "beta"), c("m", "k", "beta")))`: (converted from warning) Replacing special names '.Dim', '.Dimnames' is deprecated; use 'dim', 'dimnames' instead.
Backtrace:
▆
1. └─breathtestcore::simulate_breathtest_data(missing = 0.1, seed = 4711) at test_simulate_breathtest_data.R:58:3
2. └─base::structure(...)
3. └─base::.Deprecated(...)
4. └─base::warning(...)
5. └─base::withRestarts(...)
6. └─base (local) withOneRestart(expr, restarts[[1L]])
7. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test_simulate_breathtest_data.R:65:3'): Warning when requesting too many missing ──
Error in `structure(c(188, -0.026, -2.04, -0.026, 7.74e-06, 0.000477, -2.04, 0.000477, 0.182), .Dim = c(3L, 3L), .Dimnames = list(c("m", "k", "beta"), c("m", "k", "beta")))`: (converted from warning) Replacing special names '.Dim', '.Dimnames' is deprecated; use 'dim', 'dimnames' instead.
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test_simulate_breathtest_data.R:65:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─breathtestcore::simulate_breathtest_data(missing = 0.8, seed = 4711)
8. └─base::structure(...)
9. └─base::.Deprecated(...)
10. └─base::warning(...)
11. └─base::withRestarts(...)
12. └─base (local) withOneRestart(expr, restarts[[1L]])
13. └─base (local) doWithOneRestart(return(expr), restart)
[ FAIL 4 | WARN 19 | SKIP 4 | PASS 345 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc