Last updated on 2026-08-03 08:50:59 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.8 | 38.86 | 523.71 | 562.57 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.8 | 30.35 | 394.97 | 425.32 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.0.8 | 78.00 | 904.86 | 982.86 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.8 | 35.00 | 450.20 | 485.20 | NOTE | |
| r-devel-windows-x86_64 | 1.0.8 | 46.00 | 603.00 | 649.00 | OK | |
| r-patched-linux-x86_64 | 1.0.7 | 38.51 | 503.91 | 542.42 | OK | |
| r-release-linux-x86_64 | 1.0.8 | 42.73 | 499.60 | 542.33 | OK | |
| r-release-macos-arm64 | 1.0.8 | 13.00 | 162.00 | 175.00 | ERROR | |
| r-release-macos-x86_64 | 1.0.8 | 33.00 | 720.00 | 753.00 | ERROR | |
| r-release-windows-x86_64 | 1.0.8 | 45.00 | 576.00 | 621.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.8 | 12.00 | 180.00 | 192.00 | ERROR | |
| r-oldrel-macos-x86_64 | 1.0.8 | 31.00 | 785.00 | 816.00 | ERROR | |
| r-oldrel-windows-x86_64 | 1.0.8 | 61.00 | 722.00 | 783.00 | OK |
Version: 1.0.8
Check: for new files in some other directories
Result: NOTE
Found the following files/directories:
‘~/tmp/scratch/Rtmp0JReSp’ ‘~/tmp/scratch/Rtmp0frNva’
‘~/tmp/scratch/Rtmp1gzJra’ ‘~/tmp/scratch/Rtmp1ijUmR’
‘~/tmp/scratch/Rtmp1m0Mo7’ ‘~/tmp/scratch/Rtmp1mWFVQ’
‘~/tmp/scratch/Rtmp2VCSh3’ ‘~/tmp/scratch/Rtmp2Y1Gxl’
‘~/tmp/scratch/Rtmp2Zf9yh’ ‘~/tmp/scratch/Rtmp3aSSKA’
‘~/tmp/scratch/Rtmp59tGoq’ ‘~/tmp/scratch/Rtmp5AceRw’
‘~/tmp/scratch/Rtmp6q3XaA’ ‘~/tmp/scratch/Rtmp7IA2LB’
‘~/tmp/scratch/Rtmp7iXw3C’ ‘~/tmp/scratch/Rtmp7num5r’
‘~/tmp/scratch/Rtmp7xpKMw’ ‘~/tmp/scratch/Rtmp84OkLj’
‘~/tmp/scratch/Rtmp8jEC1X’ ‘~/tmp/scratch/Rtmp8kSfLK’
‘~/tmp/scratch/Rtmp8uBBqS’ ‘~/tmp/scratch/Rtmp9IPXwH’
‘~/tmp/scratch/Rtmp9Itxwa’ ‘~/tmp/scratch/Rtmp9sIrGC’
‘~/tmp/scratch/RtmpA9AQzm’ ‘~/tmp/scratch/RtmpALSQDr’
‘~/tmp/scratch/RtmpAPYH8Q’ ‘~/tmp/scratch/RtmpAST721’
‘~/tmp/scratch/RtmpB8Vj3e’ ‘~/tmp/scratch/RtmpBOw5Bv’
‘~/tmp/scratch/RtmpBVhuw4’ ‘~/tmp/scratch/RtmpBXf4Z4’
‘~/tmp/scratch/RtmpCt73oU’ ‘~/tmp/scratch/RtmpDPBmPe’
‘~/tmp/scratch/RtmpDYZuP5’ ‘~/tmp/scratch/RtmpDZktNc’
‘~/tmp/scratch/RtmpEDXPLJ’ ‘~/tmp/scratch/RtmpEp5LiU’
‘~/tmp/scratch/RtmpGQ7JAW’ ‘~/tmp/scratch/RtmpGzUaKf’
‘~/tmp/scratch/RtmpHBPHSc’ ‘~/tmp/scratch/RtmpJWdFKB’
‘~/tmp/scratch/RtmpKDh9Je’ ‘~/tmp/scratch/RtmpKZiB1d’
‘~/tmp/scratch/RtmpKsdWOg’ ‘~/tmp/scratch/RtmpKwVOC4’
‘~/tmp/scratch/RtmpLKyoZK’ ‘~/tmp/scratch/RtmpLeTWol’
‘~/tmp/scratch/RtmpLkAkfm’ ‘~/tmp/scratch/RtmpLlIVhY’
‘~/tmp/scratch/RtmpMENTT6’ ‘~/tmp/scratch/RtmpMIr3Pe’
‘~/tmp/scratch/RtmpMNcDxN’ ‘~/tmp/scratch/RtmpMPREuO’
‘~/tmp/scratch/RtmpMUNDRh’ ‘~/tmp/scratch/RtmpMt45uk’
‘~/tmp/scratch/RtmpMwohEK’ ‘~/tmp/scratch/RtmpN3DSt9’
‘~/tmp/scratch/RtmpNyp7kw’ ‘~/tmp/scratch/RtmpObzuBS’
‘~/tmp/scratch/RtmpOdNJzi’ ‘~/tmp/scratch/RtmpOiQSt4’
‘~/tmp/scratch/RtmpPAU7Gy’ ‘~/tmp/scratch/RtmpPI9YQc’
‘~/tmp/scratch/RtmpPKx2qT’ ‘~/tmp/scratch/RtmpPjOsM2’
‘~/tmp/scratch/RtmpPryN8x’ ‘~/tmp/scratch/RtmpQtXCqA’
‘~/tmp/scratch/RtmpR34my0’ ‘~/tmp/scratch/RtmpS08caP’
‘~/tmp/scratch/RtmpSA5LVF’ ‘~/tmp/scratch/RtmpSNcegT’
‘~/tmp/scratch/RtmpSrPRLR’ ‘~/tmp/scratch/RtmpSvJodX’
‘~/tmp/scratch/RtmpTpp1Ot’ ‘~/tmp/scratch/RtmpU94Nym’
‘~/tmp/scratch/RtmpUYnGl2’ ‘~/tmp/scratch/RtmpV2BUqV’
‘~/tmp/scratch/RtmpW3EIS9’ ‘~/tmp/scratch/RtmpWJ9Xmi’
‘~/tmp/scratch/RtmpWTQO4n’ ‘~/tmp/scratch/RtmpXPjo7I’
‘~/tmp/scratch/RtmpXW1SLx’ ‘~/tmp/scratch/RtmpXcPc4d’
‘~/tmp/scratch/RtmpXlWCXv’ ‘~/tmp/scratch/RtmpYtjvHx’
‘~/tmp/scratch/RtmpZ51Lk7’ ‘~/tmp/scratch/RtmpZRMBT0’
‘~/tmp/scratch/RtmpZRlp3e’ ‘~/tmp/scratch/RtmpZqtzfP’
‘~/tmp/scratch/RtmpaPBdvT’ ‘~/tmp/scratch/RtmpaUvOzJ’
‘~/tmp/scratch/RtmpaYrSGD’ ‘~/tmp/scratch/RtmpbSxuq8’
‘~/tmp/scratch/RtmpbcFoR6’ ‘~/tmp/scratch/Rtmpbf61Vi’
‘~/tmp/scratch/RtmpbnuRXX’ ‘~/tmp/scratch/Rtmpbpwb0N’
‘~/tmp/scratch/Rtmpc4QWsh’ ‘~/tmp/scratch/RtmpcE9hu9’
‘~/tmp/scratch/RtmpcPFtWv’ ‘~/tmp/scratch/RtmpcjFryY’
‘~/tmp/scratch/RtmpdSklZb’ ‘~/tmp/scratch/RtmpdguggK’
‘~/tmp/scratch/RtmpdkD8fh’ ‘~/tmp/scratch/RtmpeDS5vI’
‘~/tmp/scratch/RtmpfA12cz’ ‘~/tmp/scratch/RtmpgwgmU3’
‘~/tmp/scratch/RtmpgyGScR’ ‘~/tmp/scratch/RtmphP67lH’
‘~/tmp/scratch/Rtmphu8Zau’ ‘~/tmp/scratch/Rtmpi1ry9I’
‘~/tmp/scratch/Rtmpj7oZiG’ ‘~/tmp/scratch/RtmpjAPyXa’
‘~/tmp/scratch/RtmpjYwRAB’ ‘~/tmp/scratch/RtmpkCzWeY’
‘~/tmp/scratch/RtmpkkNf2b’ ‘~/tmp/scratch/RtmplTCA1L’
‘~/tmp/scratch/RtmplV0bMx’ ‘~/tmp/scratch/RtmplsJAoS’
‘~/tmp/scratch/RtmpmsUsHf’ ‘~/tmp/scratch/RtmpnKkB1A’
‘~/tmp/scratch/RtmpnL2chI’ ‘~/tmp/scratch/RtmpnYu0we’
‘~/tmp/scratch/Rtmpng4lUu’ ‘~/tmp/scratch/Rtmpnn7BsU’
‘~/tmp/scratch/RtmpntNq6z’ ‘~/tmp/scratch/RtmpoNcBp8’
‘~/tmp/scratch/RtmpoQkfy3’ ‘~/tmp/scratch/RtmposaTOT’
‘~/tmp/scratch/Rtmpp4f6fv’ ‘~/tmp/scratch/RtmppCRXbJ’
‘~/tmp/scratch/RtmppDJw0q’ ‘~/tmp/scratch/Rtmppc2XSR’
‘~/tmp/scratch/RtmppkCZ06’ ‘~/tmp/scratch/Rtmpq3ZDQy’
‘~/tmp/scratch/RtmpqEQWXB’ ‘~/tmp/scratch/RtmprJCpIz’
‘~/tmp/scratch/RtmprS45N1’ ‘~/tmp/scratch/RtmprUURFf’
‘~/tmp/scratch/RtmprVxmPL’ ‘~/tmp/scratch/RtmprbTUeG’
‘~/tmp/scratch/Rtmprj43Mi’ ‘~/tmp/scratch/RtmpsXVkUs’
‘~/tmp/scratch/RtmpsabGh3’ ‘~/tmp/scratch/RtmptQaxM8’
‘~/tmp/scratch/RtmptbnEXY’ ‘~/tmp/scratch/RtmptydUo1’
‘~/tmp/scratch/RtmpuSCU3b’ ‘~/tmp/scratch/Rtmpuu3vsd’
‘~/tmp/scratch/Rtmpv4Qtuj’ ‘~/tmp/scratch/RtmpvQRJMW’
‘~/tmp/scratch/RtmpvqzSHp’ ‘~/tmp/scratch/RtmpwYwvgY’
‘~/tmp/scratch/RtmpxRzk4Q’ ‘~/tmp/scratch/RtmpyE13ax’
‘~/tmp/scratch/RtmpzITc3q’ ‘~/tmp/scratch/RtmpzS2JIO’
‘~/tmp/scratch/RtmpzfVNUf’ ‘~/tmp/scratch/xvfb-run.2ORVXa’
‘~/tmp/scratch/xvfb-run.3QyaYO’ ‘~/tmp/scratch/xvfb-run.3uFMqT’
‘~/tmp/scratch/xvfb-run.479NWW’ ‘~/tmp/scratch/xvfb-run.6QSIrh’
‘~/tmp/scratch/xvfb-run.7bYY6Y’ ‘~/tmp/scratch/xvfb-run.8O0hwX’
‘~/tmp/scratch/xvfb-run.A8z6L0’ ‘~/tmp/scratch/xvfb-run.ADWhNm’
‘~/tmp/scratch/xvfb-run.AYebfG’ ‘~/tmp/scratch/xvfb-run.D8kZXb’
‘~/tmp/scratch/xvfb-run.D93DZw’ ‘~/tmp/scratch/xvfb-run.DNlMuM’
‘~/tmp/scratch/xvfb-run.GeKyAP’ ‘~/tmp/scratch/xvfb-run.Hh7TTc’
‘~/tmp/scratch/xvfb-run.HiO6Ol’ ‘~/tmp/scratch/xvfb-run.HpIDSU’
‘~/tmp/scratch/xvfb-run.IFKsb0’ ‘~/tmp/scratch/xvfb-run.IRCvur’
‘~/tmp/scratch/xvfb-run.JYGenm’ ‘~/tmp/scratch/xvfb-run.LjPoJh’
‘~/tmp/scratch/xvfb-run.MN8366’ ‘~/tmp/scratch/xvfb-run.NcbC6N’
‘~/tmp/scratch/xvfb-run.OITPJW’ ‘~/tmp/scratch/xvfb-run.ONNMtw’
‘~/tmp/scratch/xvfb-run.OewcSJ’ ‘~/tmp/scratch/xvfb-run.PLp5Sq’
‘~/tmp/scratch/xvfb-run.R1pU3X’ ‘~/tmp/scratch/xvfb-run.RK9p9E’
‘~/tmp/scratch/xvfb-run.SIS5Uf’ ‘~/tmp/scratch/xvfb-run.TIeOam’
‘~/tmp/scratch/xvfb-run.Tr8Alw’ ‘~/tmp/scratch/xvfb-run.UXmACO’
‘~/tmp/scratch/xvfb-run.VUpmqR’ ‘~/tmp/scratch/xvfb-run.Vl61ys’
‘~/tmp/scratch/xvfb-run.W9YH7K’ ‘~/tmp/scratch/xvfb-run.XElui4’
‘~/tmp/scratch/xvfb-run.Z9MEqR’ ‘~/tmp/scratch/xvfb-run.ZEDn7u’
‘~/tmp/scratch/xvfb-run.ZG3FAv’ ‘~/tmp/scratch/xvfb-run.Zhwy76’
‘~/tmp/scratch/xvfb-run.bYTqIH’ ‘~/tmp/scratch/xvfb-run.cUfKaS’
‘~/tmp/scratch/xvfb-run.ccdOl3’ ‘~/tmp/scratch/xvfb-run.cluCwa’
‘~/tmp/scratch/xvfb-run.deCMIZ’ ‘~/tmp/scratch/xvfb-run.gb8Ank’
‘~/tmp/scratch/xvfb-run.iYKjFv’ ‘~/tmp/scratch/xvfb-run.ic6WKR’
‘~/tmp/scratch/xvfb-run.irZEFu’ ‘~/tmp/scratch/xvfb-run.jHz8A2’
‘~/tmp/scratch/xvfb-run.l8SmDi’ ‘~/tmp/scratch/xvfb-run.lIrcpK’
‘~/tmp/scratch/xvfb-run.lhAfMl’ ‘~/tmp/scratch/xvfb-run.mL2vlz’
‘~/tmp/scratch/xvfb-run.mLc0Ul’ ‘~/tmp/scratch/xvfb-run.nAL1tm’
‘~/tmp/scratch/xvfb-run.nHpZtP’ ‘~/tmp/scratch/xvfb-run.oMGpVY’
‘~/tmp/scratch/xvfb-run.ooZxZW’ ‘~/tmp/scratch/xvfb-run.pSIjsC’
‘~/tmp/scratch/xvfb-run.ptaZFJ’ ‘~/tmp/scratch/xvfb-run.rk7uFs’
‘~/tmp/scratch/xvfb-run.s3grhg’ ‘~/tmp/scratch/xvfb-run.snzds0’
‘~/tmp/scratch/xvfb-run.tdrrG3’ ‘~/tmp/scratch/xvfb-run.u3FiaP’
‘~/tmp/scratch/xvfb-run.uoi2XN’ ‘~/tmp/scratch/xvfb-run.vK7WUA’
‘~/tmp/scratch/xvfb-run.vjLi1B’ ‘~/tmp/scratch/xvfb-run.vtMqkJ’
‘~/tmp/scratch/xvfb-run.xOea3K’ ‘~/tmp/scratch/xvfb-run.xQdjnL’
‘~/tmp/scratch/xvfb-run.xZ1E3i’ ‘~/tmp/scratch/xvfb-run.xz0Gbh’
‘~/tmp/scratch/xvfb-run.yE6yMf’ ‘~/tmp/scratch/xvfb-run.yXnX4n’
‘~/tmp/scratch/xvfb-run.yqH91m’ ‘~/tmp/scratch/xvfb-run.z9jBIy’
‘~/tmp/scratch/xvfb-run.zTTwGV’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.8
Check: for non-standard things in the check directory
Result: NOTE
Found the following files/directories:
‘BSgenome.Ecoli.NCBI.ASM584v2’ ‘BSgenomeForge’
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.8
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘genome_wide_tm_ecoli.Rmd’ using rmarkdown
trying URL 'https://bioconductor.org/packages/3.23/bioc/bin/macosx/sonoma-arm64/contrib/4.6/BSgenomeForge_1.12.0.tgz'
Content type 'application/x-gzip' length 833586 bytes (814 KB)
==================================================
downloaded 814 KB
trying URL 'https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/005/845/GCF_000005845.2_ASM584v2/GCF_000005845.2_ASM584v2_genomic.fna.gz'
Content type 'application/x-gzip' length 1379902 bytes (1.3 MB)
==================================================
downloaded 1.3 MB
Quitting from genome_wide_tm_ecoli.Rmd:313-319 [linear-full]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Package 'karyoploteR' is required for linear genome plots. Install it with: BiocManager::install("karyoploteR")
---
Backtrace:
▆
1. └─TmCalculator::plot_genome_track(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'genome_wide_tm_ecoli.Rmd' failed with diagnostics:
Package 'karyoploteR' is required for linear genome plots. Install it with: BiocManager::install("karyoploteR")
--- failed re-building ‘genome_wide_tm_ecoli.Rmd’
SUMMARY: processing the following file failed:
‘genome_wide_tm_ecoli.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-arm64
Version: 1.0.8
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘genome_wide_tm_ecoli.Rmd’ using rmarkdown
trying URL 'https://bioconductor.org/packages/3.23/bioc/bin/macosx/big-sur-x86_64/contrib/4.6/BSgenomeForge_1.12.0.tgz'
Content type 'application/x-gzip' length 829233 bytes (809 KB)
==================================================
downloaded 809 KB
trying URL 'https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/005/845/GCF_000005845.2_ASM584v2/GCF_000005845.2_ASM584v2_genomic.fna.gz'
Content type 'application/x-gzip' length 1379902 bytes (1.3 MB)
==================================================
downloaded 1.3 MB
Quitting from genome_wide_tm_ecoli.Rmd:313-319 [linear-full]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Package 'karyoploteR' is required for linear genome plots. Install it with: BiocManager::install("karyoploteR")
---
Backtrace:
▆
1. └─TmCalculator::plot_genome_track(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'genome_wide_tm_ecoli.Rmd' failed with diagnostics:
Package 'karyoploteR' is required for linear genome plots. Install it with: BiocManager::install("karyoploteR")
--- failed re-building ‘genome_wide_tm_ecoli.Rmd’
SUMMARY: processing the following file failed:
‘genome_wide_tm_ecoli.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.0.8
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘genome_wide_tm_ecoli.Rmd’ using rmarkdown
trying URL 'https://bioconductor.org/packages/3.22/bioc/bin/macosx/big-sur-arm64/contrib/4.5/BSgenomeForge_1.10.2.tgz'
Content type 'application/x-compressed-tar' length 832361 bytes (812 KB)
==================================================
downloaded 812 KB
trying URL 'https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/005/845/GCF_000005845.2_ASM584v2/GCF_000005845.2_ASM584v2_genomic.fna.gz'
Content type 'application/x-gzip' length 1379902 bytes (1.3 MB)
==================================================
downloaded 1.3 MB
2026-08-03 16:25:32.150 R[23591:181477] XType: Using static font registry.
Quitting from genome_wide_tm_ecoli.Rmd:313-319 [linear-full]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Package 'karyoploteR' is required for linear genome plots. Install it with: BiocManager::install("karyoploteR")
---
Backtrace:
▆
1. └─TmCalculator::plot_genome_track(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'genome_wide_tm_ecoli.Rmd' failed with diagnostics:
Package 'karyoploteR' is required for linear genome plots. Install it with: BiocManager::install("karyoploteR")
--- failed re-building ‘genome_wide_tm_ecoli.Rmd’
SUMMARY: processing the following file failed:
‘genome_wide_tm_ecoli.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 1.0.8
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘genome_wide_tm_ecoli.Rmd’ using rmarkdown
trying URL 'https://bioconductor.org/packages/3.21/bioc/bin/macosx/big-sur-x86_64/contrib/4.5/BSgenomeForge_1.8.1.tgz'
Content type 'application/x-compressed-tar' length 827147 bytes (807 KB)
==================================================
downloaded 807 KB
trying URL 'https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/005/845/GCF_000005845.2_ASM584v2/GCF_000005845.2_ASM584v2_genomic.fna.gz'
Content type 'application/x-gzip' length 1379902 bytes (1.3 MB)
==================================================
downloaded 1.3 MB
Quitting from genome_wide_tm_ecoli.Rmd:313-319 [linear-full]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Package 'karyoploteR' is required for linear genome plots. Install it with: BiocManager::install("karyoploteR")
---
Backtrace:
▆
1. └─TmCalculator::plot_genome_track(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'genome_wide_tm_ecoli.Rmd' failed with diagnostics:
Package 'karyoploteR' is required for linear genome plots. Install it with: BiocManager::install("karyoploteR")
--- failed re-building ‘genome_wide_tm_ecoli.Rmd’
SUMMARY: processing the following file failed:
‘genome_wide_tm_ecoli.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-x86_64