CRAN Package Check Results for Package RMark

Last updated on 2026-08-03 10:51:44 CEST.

Flavor	Version	T_install	T_check	T_total	Status	Flags
r-devel-linux-x86_64-debian-clang	3.1.0	19.28	145.19	164.47	OK	--install=fake --no-examples --no-tests --no-vignettes
r-devel-linux-x86_64-debian-gcc	3.1.0	13.53	100.52	114.05	NOTE	--install=fake --no-examples --no-tests --no-vignettes
r-devel-linux-x86_64-fedora-clang	3.1.0	33.00	220.67	253.67	NOTE
r-devel-linux-x86_64-fedora-gcc	3.1.0	13.00	95.13	108.13	NOTE
r-devel-windows-x86_64	3.1.0	30.00	177.00	207.00	OK
r-patched-linux-x86_64	3.1.0	20.75	132.55	153.30	OK	--install=fake --no-examples --no-tests --no-vignettes
r-release-linux-x86_64	3.1.0	16.48	134.31	150.79	OK	--install=fake --no-examples --no-tests --no-vignettes
r-release-macos-arm64	3.1.0	5.00	33.00	38.00	ERROR
r-release-macos-x86_64	3.1.0	14.00	130.00	144.00	ERROR
r-release-windows-x86_64	3.1.0	23.00	180.00	203.00	OK
r-oldrel-macos-arm64	3.1.0	4.00	35.00	39.00	ERROR
r-oldrel-macos-x86_64	3.1.0	14.00	180.00	194.00	ERROR
r-oldrel-windows-x86_64	3.1.0	32.00	220.00	252.00	OK

Check Details

Version: 3.1.0
Flags: --install=fake --no-examples --no-tests --no-vignettes
Check: for new files in some other directories
Result: NOTE Found the following files/directories: ‘~/tmp/scratch/Rtmp0EzuFK’ ‘~/tmp/scratch/Rtmp0GbPqJ’ ‘~/tmp/scratch/Rtmp0dSSZa’ ‘~/tmp/scratch/Rtmp1RGgmC’ ‘~/tmp/scratch/Rtmp1aslCr’ ‘~/tmp/scratch/Rtmp1gh43K’ ‘~/tmp/scratch/Rtmp2EyJ09’ ‘~/tmp/scratch/Rtmp2tSXEn’ ‘~/tmp/scratch/Rtmp3HQNW4’ ‘~/tmp/scratch/Rtmp3SSTvP’ ‘~/tmp/scratch/Rtmp3s4qhe’ ‘~/tmp/scratch/Rtmp4jQ4pK’ ‘~/tmp/scratch/Rtmp6Jq60h’ ‘~/tmp/scratch/Rtmp6e48UI’ ‘~/tmp/scratch/Rtmp6eW4NX’ ‘~/tmp/scratch/Rtmp7Io9k5’ ‘~/tmp/scratch/Rtmp7si10z’ ‘~/tmp/scratch/Rtmp8WzGp6’ ‘~/tmp/scratch/Rtmp8bnatC’ ‘~/tmp/scratch/Rtmp8hS6fv’ ‘~/tmp/scratch/Rtmp8l1fas’ ‘~/tmp/scratch/Rtmp8ukHQD’ ‘~/tmp/scratch/Rtmp8vnBWI’ ‘~/tmp/scratch/Rtmp9cLfGt’ ‘~/tmp/scratch/RtmpAcQoM8’ ‘~/tmp/scratch/RtmpBBXSEm’ ‘~/tmp/scratch/RtmpByM1zg’ ‘~/tmp/scratch/RtmpCBv0tQ’ ‘~/tmp/scratch/RtmpCMxNWS’ ‘~/tmp/scratch/RtmpCgm3qK’ ‘~/tmp/scratch/RtmpCtsdAm’ ‘~/tmp/scratch/RtmpDB2Eel’ ‘~/tmp/scratch/RtmpDg05yL’ ‘~/tmp/scratch/RtmpEEl3RB’ ‘~/tmp/scratch/RtmpEOtLGW’ ‘~/tmp/scratch/RtmpEsCzdv’ ‘~/tmp/scratch/RtmpEybv3T’ ‘~/tmp/scratch/RtmpFBXUQN’ ‘~/tmp/scratch/RtmpFs7qzf’ ‘~/tmp/scratch/RtmpGOwDgm’ ‘~/tmp/scratch/RtmpGRgW07’ ‘~/tmp/scratch/RtmpHLH3Ni’ ‘~/tmp/scratch/RtmpHibUGt’ ‘~/tmp/scratch/RtmpHzIPkj’ ‘~/tmp/scratch/RtmpIR7X0s’ ‘~/tmp/scratch/RtmpIYmXqy’ ‘~/tmp/scratch/RtmpIf1S2X’ ‘~/tmp/scratch/RtmpIirFnt’ ‘~/tmp/scratch/RtmpJeOMi8’ ‘~/tmp/scratch/RtmpKgsnOY’ ‘~/tmp/scratch/RtmpKm3OBq’ ‘~/tmp/scratch/RtmpLZgAVD’ ‘~/tmp/scratch/RtmpMHb3Gq’ ‘~/tmp/scratch/RtmpMNJ3FF’ ‘~/tmp/scratch/RtmpN2I3Mx’ ‘~/tmp/scratch/RtmpO2ynXl’ ‘~/tmp/scratch/RtmpOwXTMb’ ‘~/tmp/scratch/RtmpP5eYLt’ ‘~/tmp/scratch/RtmpQT0ZXy’ ‘~/tmp/scratch/RtmpQdLNYT’ ‘~/tmp/scratch/RtmpR3NkZu’ ‘~/tmp/scratch/RtmpRBgnzD’ ‘~/tmp/scratch/RtmpRb8VqE’ ‘~/tmp/scratch/RtmpRkOITg’ ‘~/tmp/scratch/RtmpRvM7rs’ ‘~/tmp/scratch/RtmpSj54aV’ ‘~/tmp/scratch/RtmpTGg50A’ ‘~/tmp/scratch/RtmpU3AjLe’ ‘~/tmp/scratch/RtmpU3P1Bw’ ‘~/tmp/scratch/RtmpU6hsrA’ ‘~/tmp/scratch/RtmpUJQi0n’ ‘~/tmp/scratch/RtmpUMtZi5’ ‘~/tmp/scratch/RtmpV6HWZv’ ‘~/tmp/scratch/RtmpV9IEt6’ ‘~/tmp/scratch/RtmpVRazJn’ ‘~/tmp/scratch/RtmpVsijlu’ ‘~/tmp/scratch/RtmpW9h86a’ ‘~/tmp/scratch/RtmpWjeOrS’ ‘~/tmp/scratch/RtmpY37GVh’ ‘~/tmp/scratch/RtmpYJ5Nlp’ ‘~/tmp/scratch/RtmpYTrZlY’ ‘~/tmp/scratch/RtmpYoE2Rw’ ‘~/tmp/scratch/RtmpZFZ6kV’ ‘~/tmp/scratch/RtmpZk2MxF’ ‘~/tmp/scratch/RtmpZk6R7B’ ‘~/tmp/scratch/RtmpZm56gU’ ‘~/tmp/scratch/RtmpaxbjVs’ ‘~/tmp/scratch/RtmpbE48hs’ ‘~/tmp/scratch/RtmpbjExHV’ ‘~/tmp/scratch/RtmpcHxQDh’ ‘~/tmp/scratch/Rtmpd5TYTE’ ‘~/tmp/scratch/RtmpdEtVNW’ ‘~/tmp/scratch/Rtmpdt3kvc’ ‘~/tmp/scratch/RtmpeC6xOH’ ‘~/tmp/scratch/RtmpeypmrR’ ‘~/tmp/scratch/RtmpfAGtvM’ ‘~/tmp/scratch/RtmpfDIbON’ ‘~/tmp/scratch/RtmpfPw1nI’ ‘~/tmp/scratch/RtmpffgEw7’ ‘~/tmp/scratch/RtmpgCUgLT’ ‘~/tmp/scratch/RtmpgCw2iE’ ‘~/tmp/scratch/Rtmpi32Aa5’ ‘~/tmp/scratch/Rtmpi7w2T7’ ‘~/tmp/scratch/Rtmpic6ztG’ ‘~/tmp/scratch/RtmpioEGyU’ ‘~/tmp/scratch/Rtmpj4SfkF’ ‘~/tmp/scratch/Rtmpjf01DS’ ‘~/tmp/scratch/RtmpjsdSWU’ ‘~/tmp/scratch/RtmpkISuY7’ ‘~/tmp/scratch/RtmpkRyr05’ ‘~/tmp/scratch/RtmplLqwEi’ ‘~/tmp/scratch/RtmplVTmac’ ‘~/tmp/scratch/Rtmplp0Ztx’ ‘~/tmp/scratch/RtmpoMNx61’ ‘~/tmp/scratch/RtmpoTArTW’ ‘~/tmp/scratch/RtmpozyMW0’ ‘~/tmp/scratch/Rtmpp2FuMX’ ‘~/tmp/scratch/RtmppSCH6V’ ‘~/tmp/scratch/Rtmpq1Tq5V’ ‘~/tmp/scratch/RtmprgRtxc’ ‘~/tmp/scratch/RtmprjulWN’ ‘~/tmp/scratch/Rtmpt8hivH’ ‘~/tmp/scratch/RtmptgnvVE’ ‘~/tmp/scratch/Rtmpu1IeW1’ ‘~/tmp/scratch/Rtmpuxr0y5’ ‘~/tmp/scratch/Rtmpv4lXt9’ ‘~/tmp/scratch/RtmpwmYUu4’ ‘~/tmp/scratch/Rtmpx7XdnI’ ‘~/tmp/scratch/RtmpxC9Yok’ ‘~/tmp/scratch/RtmpxvItEj’ ‘~/tmp/scratch/RtmpxvnRt1’ ‘~/tmp/scratch/Rtmpy2zg6t’ ‘~/tmp/scratch/RtmpysTff8’ ‘~/tmp/scratch/xvfb-run.2D1vK4’ ‘~/tmp/scratch/xvfb-run.3F9ynD’ ‘~/tmp/scratch/xvfb-run.3YUirl’ ‘~/tmp/scratch/xvfb-run.3kpjM6’ ‘~/tmp/scratch/xvfb-run.4DRvEh’ ‘~/tmp/scratch/xvfb-run.4kRx7p’ ‘~/tmp/scratch/xvfb-run.6R6fDW’ ‘~/tmp/scratch/xvfb-run.6m53vM’ ‘~/tmp/scratch/xvfb-run.7gBnOc’ ‘~/tmp/scratch/xvfb-run.800U0g’ ‘~/tmp/scratch/xvfb-run.8pF3ad’ ‘~/tmp/scratch/xvfb-run.Aq8NMP’ ‘~/tmp/scratch/xvfb-run.CgONv2’ ‘~/tmp/scratch/xvfb-run.CvVFEt’ ‘~/tmp/scratch/xvfb-run.D5eDcJ’ ‘~/tmp/scratch/xvfb-run.DURctL’ ‘~/tmp/scratch/xvfb-run.E5mGwc’ ‘~/tmp/scratch/xvfb-run.GY0emI’ ‘~/tmp/scratch/xvfb-run.Gh8VGe’ ‘~/tmp/scratch/xvfb-run.GhfjIr’ ‘~/tmp/scratch/xvfb-run.Glp22v’ ‘~/tmp/scratch/xvfb-run.HVcMZb’ ‘~/tmp/scratch/xvfb-run.KRJcN5’ ‘~/tmp/scratch/xvfb-run.L1C1f5’ ‘~/tmp/scratch/xvfb-run.M5KzMp’ ‘~/tmp/scratch/xvfb-run.OEAtRW’ ‘~/tmp/scratch/xvfb-run.OgFn4X’ ‘~/tmp/scratch/xvfb-run.PrQ5rU’ ‘~/tmp/scratch/xvfb-run.RwhDAc’ ‘~/tmp/scratch/xvfb-run.SM8SGH’ ‘~/tmp/scratch/xvfb-run.TmoA1s’ ‘~/tmp/scratch/xvfb-run.XqTN9w’ ‘~/tmp/scratch/xvfb-run.XuGqHA’ ‘~/tmp/scratch/xvfb-run.YEEAPE’ ‘~/tmp/scratch/xvfb-run.Yuwaa3’ ‘~/tmp/scratch/xvfb-run.Yw01AX’ ‘~/tmp/scratch/xvfb-run.a3fscp’ ‘~/tmp/scratch/xvfb-run.aA8oVE’ ‘~/tmp/scratch/xvfb-run.bAxlt4’ ‘~/tmp/scratch/xvfb-run.d4JnWt’ ‘~/tmp/scratch/xvfb-run.ddst0T’ ‘~/tmp/scratch/xvfb-run.eH80eH’ ‘~/tmp/scratch/xvfb-run.eplPJ5’ ‘~/tmp/scratch/xvfb-run.fc5NTt’ ‘~/tmp/scratch/xvfb-run.fixa3Q’ ‘~/tmp/scratch/xvfb-run.hOgMwF’ ‘~/tmp/scratch/xvfb-run.hToCPe’ ‘~/tmp/scratch/xvfb-run.hXMAHI’ ‘~/tmp/scratch/xvfb-run.i2f8eQ’ ‘~/tmp/scratch/xvfb-run.luwdtx’ ‘~/tmp/scratch/xvfb-run.mfdq3m’ ‘~/tmp/scratch/xvfb-run.nZpoCG’ ‘~/tmp/scratch/xvfb-run.oLYAPO’ ‘~/tmp/scratch/xvfb-run.oUhAR6’ ‘~/tmp/scratch/xvfb-run.pEnq2a’ ‘~/tmp/scratch/xvfb-run.qTmrgL’ ‘~/tmp/scratch/xvfb-run.rzHpM0’ ‘~/tmp/scratch/xvfb-run.twNkfz’ ‘~/tmp/scratch/xvfb-run.uByuJ5’ ‘~/tmp/scratch/xvfb-run.vu3g9N’ ‘~/tmp/scratch/xvfb-run.w76ofY’ ‘~/tmp/scratch/xvfb-run.wb7WPy’ ‘~/tmp/scratch/xvfb-run.y6TpEZ’ Flavor: r-devel-linux-x86_64-debian-gcc

Version: 3.1.0
Check: for non-standard things in the check directory
Result: NOTE Found the following files/directories: ‘mark001.resbatch’ Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 3.1.0
Check: examples
Result: ERROR Running examples in ‘RMark-Ex.R’ failed The error most likely occurred in: > ### Name: Blackduck > ### Title: Black duck known fate data > ### Aliases: Blackduck > ### Keywords: datasets > > ### ** Examples > > > data(Blackduck) > # Change BirdAge to numeric; starting with version 1.6.3 factor variables are > # no longer allowed. They can work as in this example but they can be misleading > # and fail if the levels are non-numeric. The real parameters will remain > # unchanged but the betas will be different. > Blackduck$BirdAge=as.numeric(Blackduck$BirdAge)-1 > run.Blackduck=function() + { + # + # Process data + # + bduck.processed=process.data(Blackduck,model="Known") + # + # Create default design data + # + bduck.ddl=make.design.data(bduck.processed) + # + # Add occasion specific data min < 0; I have no idea what it is + # + bduck.ddl$S$min=c(4,6,7,7,7,6,5,5) + # + # Define range of models for S + # + S.dot=list(formula=~1) + S.time=list(formula=~time) + S.min=list(formula=~min) + S.BirdAge=list(formula=~BirdAge) + # + # Note that in the following model in the MARK example, the covariates + # have been standardized. That means that the beta parameters will be different + # for BirdAge, Weight and their interaction but the likelihood and real parameter + # estimates are the same. + # + S.BirdAgexWeight.min=list(formula=~min+BirdAge*Weight) + S.BirdAge.Weight=list(formula=~BirdAge+Weight) + # + # Create model list and run assortment of models + # + model.list=create.model.list("Known") + bduck.results=mark.wrapper(model.list,data=bduck.processed,ddl=bduck.ddl, + invisible=FALSE,threads=1,delete=TRUE) + + # + # Return model table and list of models + # + return(bduck.results) + } > bduck.results=run.Blackduck() S.BirdAge sh: mark: command not found Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, : error in running command Error in run.mark.model(model, invisible = invisible, adjust = adjust, : Output file does not exist. Unable to find or run mark.exe S.BirdAge.Weight sh: mark: command not found Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, : error in running command Error in run.mark.model(model, invisible = invisible, adjust = adjust, : Output file does not exist. Unable to find or run mark.exe S.BirdAgexWeight.min sh: mark: command not found Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, : error in running command Error in run.mark.model(model, invisible = invisible, adjust = adjust, : Output file does not exist. Unable to find or run mark.exe S.dot sh: mark: command not found Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, : error in running command Error in run.mark.model(model, invisible = invisible, adjust = adjust, : Output file does not exist. Unable to find or run mark.exe S.min sh: mark: command not found Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, : error in running command Error in run.mark.model(model, invisible = invisible, adjust = adjust, : Output file does not exist. Unable to find or run mark.exe S.time sh: mark: command not found Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, : error in running command Error in run.mark.model(model, invisible = invisible, adjust = adjust, : Output file does not exist. Unable to find or run mark.exe No mark models found Error in collect.models() : Calls: run.Blackduck -> mark.wrapper -> collect.models Execution halted Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64