Last updated on 2026-09-05 20:51:51 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.0 | 12.73 | 938.52 | 951.25 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.0.0 | 9.99 | 921.36 | 931.35 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.0.0 | 11.00 | 401.05 | 412.05 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 2.0.0 | 12.00 | 562.73 | 574.73 | OK | |
| r-devel-windows-x86_64 | 2.0.0 | 15.00 | 1341.00 | 1356.00 | OK | |
| r-patched-linux-x86_64 | 2.0.0 | 17.01 | 1022.15 | 1039.16 | OK | |
| r-release-linux-x86_64 | 2.0.0 | 17.87 | 1008.71 | 1026.58 | OK | |
| r-release-macos-arm64 | 2.0.0 | 3.00 | 148.00 | 151.00 | OK | |
| r-release-macos-x86_64 | 2.0.0 | 10.00 | 677.00 | 687.00 | OK | |
| r-release-windows-x86_64 | 2.0.0 | 14.00 | 1393.00 | 1407.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.0 | 3.00 | 163.00 | 166.00 | OK | |
| r-oldrel-macos-x86_64 | 2.0.0 | 10.00 | 653.00 | 663.00 | OK | |
| r-oldrel-windows-x86_64 | 2.0.0 | 19.00 | 345.00 | 364.00 | ERROR |
Version: 2.0.0
Check: tests
Result: ERROR
Running 'testthat.R' [202s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(GMLTM)
> test_check("GMLTM")
make cmd is
make -f "D:/RCompile/recent/R-4.5.3/etc/x64/Makeconf" -f "D:/RCompile/recent/R-4.5.3/share/make/winshlib.mk" CXX='$(CXX17) $(CXX17STD)' CXXFLAGS='$(CXX17FLAGS)' CXXPICFLAGS='$(CXX17PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX17LDFLAGS)' SHLIB_LD='$(SHLIB_CXX17LD)' SHLIB="file16cd88ad4064.dll" WIN=64 TCLBIN= OBJECTS="file16cd88ad4064.o"
make would use
make[1]: Entering directory '/d/temp/2026_09_03_01_02_10_20122/RtmpQhtmvQ'
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I"D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/" -I"D:/temp/2026_09_03_01_02_10_20122/RtmpmCcYZq/RLIBS_175bc38291688/RcppEigen/include/" -I"D:/temp/2026_09_03_01_02_10_20122/RtmpmCcYZq/RLIBS_175bc38291688/RcppEigen/include/unsupported" -I"D:/temp/2026_09_03_01_02_10_20122/RtmpmCcYZq/RLIBS_175bc38291688/BH/include" -I"D:/RCompile/CRANpkg/lib/4.5/StanHeaders/include/src/" -I"D:/RCompile/CRANpkg/lib/4.5/StanHeaders/include/" -I"D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include/" -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -ID:/RCompile/CRANpkg/lib/4.5/RcppParallel/include -I"D:/RCompile/CRANpkg/lib/4.5/rstan/include" -DEIGEN_NO_DEBUG -DBOOST_DISABLE_ASSERTS -DBOOST_PENDING_INTEGER_LOG2_HPP -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -include "D:/RCompile/CRANpkg/lib/4.5/StanHeaders/include/stan/math/prim/fun/Eigen.hpp" -std=c++1y -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c file16cd88ad4064.cpp -o file16cd88ad4064.o
if test "zfile16cd88ad4064.o" != "z"; then \
if test -e "file16cd88ad4064-win.def"; then \
echo g++ -shared -s -static-libgcc -o file16cd88ad4064.dll file16cd88ad4064-win.def file16cd88ad4064.o "D:/RCompile/CRANpkg/lib/4.5/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.5/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64" -ltbb -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R-4.5.3/bin/x64" -lR ; \
g++ -shared -s -static-libgcc -o file16cd88ad4064.dll file16cd88ad4064-win.def file16cd88ad4064.o "D:/RCompile/CRANpkg/lib/4.5/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.5/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64" -ltbb -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R-4.5.3/bin/x64" -lR ; \
else \
echo EXPORTS > tmp.def; \
nm file16cd88ad4064.o | sed -n 's/^.* [BCDRT] / /p' | sed -e '/[.]refptr[.]/d' -e '/[.]weak[.]/d' | sed 's/[^ ][^ ]*/"&"/g' >> tmp.def; \
echo g++ -shared -s -static-libgcc -o file16cd88ad4064.dll tmp.def file16cd88ad4064.o "D:/RCompile/CRANpkg/lib/4.5/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.5/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64" -ltbb -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R-4.5.3/bin/x64" -lR ; \
g++ -shared -s -static-libgcc -o file16cd88ad4064.dll tmp.def file16cd88ad4064.o "D:/RCompile/CRANpkg/lib/4.5/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.5/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64" -ltbb -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R-4.5.3/bin/x64" -lR ; \
rm -f tmp.def; \
fi \
fi
make[1]: Leaving directory '/d/temp/2026_09_03_01_02_10_20122/RtmpQhtmvQ'
Saving _problems/test-data-input-64.R
make cmd is
make -f "D:/RCompile/recent/R-4.5.3/etc/x64/Makeconf" -f "D:/RCompile/recent/R-4.5.3/share/make/winshlib.mk" CXX='$(CXX17) $(CXX17STD)' CXXFLAGS='$(CXX17FLAGS)' CXXPICFLAGS='$(CXX17PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX17LDFLAGS)' SHLIB_LD='$(SHLIB_CXX17LD)' SHLIB="file16cd8550a47d6.dll" WIN=64 TCLBIN= OBJECTS="file16cd8550a47d6.o"
make would use
make[1]: Entering directory '/d/temp/2026_09_03_01_02_10_20122/RtmpQhtmvQ'
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I"D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/" -I"D:/temp/2026_09_03_01_02_10_20122/RtmpmCcYZq/RLIBS_175bc38291688/RcppEigen/include/" -I"D:/temp/2026_09_03_01_02_10_20122/RtmpmCcYZq/RLIBS_175bc38291688/RcppEigen/include/unsupported" -I"D:/temp/2026_09_03_01_02_10_20122/RtmpmCcYZq/RLIBS_175bc38291688/BH/include" -I"D:/RCompile/CRANpkg/lib/4.5/StanHeaders/include/src/" -I"D:/RCompile/CRANpkg/lib/4.5/StanHeaders/include/" -I"D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include/" -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -ID:/RCompile/CRANpkg/lib/4.5/RcppParallel/include -I"D:/RCompile/CRANpkg/lib/4.5/rstan/include" -DEIGEN_NO_DEBUG -DBOOST_DISABLE_ASSERTS -DBOOST_PENDING_INTEGER_LOG2_HPP -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -include "D:/RCompile/CRANpkg/lib/4.5/StanHeaders/include/stan/math/prim/fun/Eigen.hpp" -std=c++1y -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c file16cd8550a47d6.cpp -o file16cd8550a47d6.o
if test "zfile16cd8550a47d6.o" != "z"; then \
if test -e "file16cd8550a47d6-win.def"; then \
echo g++ -shared -s -static-libgcc -o file16cd8550a47d6.dll file16cd8550a47d6-win.def file16cd8550a47d6.o "D:/RCompile/CRANpkg/lib/4.5/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.5/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64" -ltbb -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R-4.5.3/bin/x64" -lR ; \
g++ -shared -s -static-libgcc -o file16cd8550a47d6.dll file16cd8550a47d6-win.def file16cd8550a47d6.o "D:/RCompile/CRANpkg/lib/4.5/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.5/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64" -ltbb -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R-4.5.3/bin/x64" -lR ; \
else \
echo EXPORTS > tmp.def; \
nm file16cd8550a47d6.o | sed -n 's/^.* [BCDRT] / /p' | sed -e '/[.]refptr[.]/d' -e '/[.]weak[.]/d' | sed 's/[^ ][^ ]*/"&"/g' >> tmp.def; \
echo g++ -shared -s -static-libgcc -o file16cd8550a47d6.dll tmp.def file16cd8550a47d6.o "D:/RCompile/CRANpkg/lib/4.5/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.5/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64" -ltbb -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R-4.5.3/bin/x64" -lR ; \
g++ -shared -s -static-libgcc -o file16cd8550a47d6.dll tmp.def file16cd8550a47d6.o "D:/RCompile/CRANpkg/lib/4.5/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.5/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64" -ltbb -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R-4.5.3/bin/x64" -lR ; \
rm -f tmp.def; \
fi \
fi
make[1]: Leaving directory '/d/temp/2026_09_03_01_02_10_20122/RtmpQhtmvQ'
Saving _problems/test-priors-50.R
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 84 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-data-input.R:60:3'): fitting with a plain matrix runs end to end without error (all four models) ──
Error in `compileCode(f, code, language = language, verbose = verbose)`: odel16cd83d574076__namespace::model16cd83d574076_; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]'
22 | return 0.5 * z.p.transpose() * z.inv_e_metric_ * z.p;
D:/RCompile/CRANpkg/lib/4.5/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here
21 | double T(dense_e_point& z) {
D:/RCompile/CRANpkg/lib/4.5/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
make[1]: *** [D:/RCompile/recent/R-4.5.3/etc/x64/Makeconf:302: file16cd88ad4064.o] Error 1
Backtrace:
▆
1. ├─testthat::expect_s3_class(...) at test-data-input.R:60:3
2. │ └─testthat::quasi_label(enquo(object))
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─base::suppressWarnings(...)
5. │ └─base::withCallingHandlers(...)
6. └─GMLTM::GMLTM(...)
7. └─rstan::stan_model(stan_file)
8. └─rstan:::cxxfunctionplus(...)
9. ├─pkgbuild::with_build_tools(...)
10. │ └─pkgbuild:::withr_with_path(rtools_path(), code)
11. │ └─base::force(code)
12. └─inline::cxxfunction(...)
13. └─inline:::compileCode(f, code, language = language, verbose = verbose)
── Error ('test-data-input.R:60:3'): fitting with a plain matrix runs end to end without error (all four models) ──
Error in `sink(type = "output")`: invalid connection
Backtrace:
▆
1. ├─testthat::expect_s3_class(...) at test-data-input.R:60:3
2. │ └─testthat::quasi_label(enquo(object))
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─base::suppressWarnings(...)
5. │ └─base::withCallingHandlers(...)
6. └─GMLTM::GMLTM(...)
7. └─rstan::stan_model(stan_file)
8. └─rstan:::cxxfunctionplus(...)
9. └─base::sink(type = "output")
── Error ('test-priors.R:46:3'): GMLTM fits successfully with priors$alpha$family = 'lognormal' ──
Error in `compileCode(f, code, language = language, verbose = verbose)`: del16cd845b37164__namespace::model16cd845b37164_; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]'
22 | return 0.5 * z.p.transpose() * z.inv_e_metric_ * z.p;
D:/RCompile/CRANpkg/lib/4.5/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here
21 | double T(dense_e_point& z) {
D:/RCompile/CRANpkg/lib/4.5/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
make[1]: *** [D:/RCompile/recent/R-4.5.3/etc/x64/Makeconf:302: file16cd8550a47d6.o] Error 1
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-priors.R:46:3
2. │ └─base::withCallingHandlers(...)
3. └─GMLTM::GMLTM(...)
4. └─rstan::stan_model(stan_file)
5. └─rstan:::cxxfunctionplus(...)
6. ├─pkgbuild::with_build_tools(...)
7. │ └─pkgbuild:::withr_with_path(rtools_path(), code)
8. │ └─base::force(code)
9. └─inline::cxxfunction(...)
10. └─inline:::compileCode(f, code, language = language, verbose = verbose)
── Error ('test-priors.R:46:3'): GMLTM fits successfully with priors$alpha$family = 'lognormal' ──
Error in `sink(type = "output")`: invalid connection
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-priors.R:46:3
2. │ └─base::withCallingHandlers(...)
3. └─GMLTM::GMLTM(...)
4. └─rstan::stan_model(stan_file)
5. └─rstan:::cxxfunctionplus(...)
6. └─base::sink(type = "output")
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 84 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64