Comprehensive Database for Pathway Enrichment Analysis

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Documentation for package ‘pathdb’ version 0.1.0

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

connect_database	Query Bioinformatics Database
convert_id	Convert Gene IDs to Ensembl
get_genes	Get Gene Information
get_pathways	Get Species Pathways
get_table	Get Table from Selected Database
hypoxia_deseq	Hypoxia Data Differential Expression Analysis Results
hypoxia_reads	Hypoxia Data Gene Counts
hypoxia_T2G	Example KEGG Pathway Mapping for Hypoxia
list_tables	List Table Options
path_categories	Retrieve Pathway Categories
path_filter	Filter Pathway Information By Category
process_data	Process Gene Expression Data
search_species	Search for Species by Name
T2G_prep	TERM2GENE Data Prep for iDEP Database