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| MADAM-package | MADAM - Meta-Analytical Data Aggregation Methods Toolbox |
| calculateRankProduct | Calculate the rank product and asses the significance |
| calculateRankSum | Calculate the rank sum and assess the significance |
| corrNA | Functions to impute missing values |
| corrVar | Function to replace variances of zero |
| default.zero.subst | Default zero significance replacement |
| doEnsemble | Method to perform an ensemble approach for meta-analysis. |
| doES | Method to wrap parameters for Effect Size Meta Analysis. |
| doRhodesFDR | Function for performing classical Rhodes MA method by deriving significance from p-values and permutating labels. |
| doRP | Function for calling RankProduct meta-analysis method by Breitling. |
| fisherMethod | Perform classical Fisher Method for combining p-values in a parallel manner. |
| fishersum | Function to calculate Fisher's sum. |
| generateRandomMAData | Calculate the rank product and asses the significance |
| getNbSamples | Generate random number of samples for studies. |
| MADAM | MADAM - Meta-Analytical Data Aggregation Methods Toolbox |
| multiTtest | Function to perform t-tests on a list of ExpressionSets. |
| plotFDR | Plot results significance against the rank of the significance. |
| plotHeatMap | Function for plotting ranklist heatmap. |
| plotMAVolcano | Function for MA-volcano plot |