.libPaths2              .libpaths2
BiocDevel               BiocDevel
BiocRelease             BiocRelease
BiocSVNManifest         Create a manifest of Bioc SVN locations
BiocVers                BiocVers A constructor for creating a
                        RepoSubset object for a specified release of
                        Bioconductor, which includes only the
                        BiocInstaller package.
GithubManifest          GithubManifest
LibraryProfile-class    LibraryProfile (experimental) Currently
                        unused/under heavy development.
ManifestRow             ManifestRow
PkgManifest             PkgManifest
PkgSource-class         PkgSource An object representing the source
                        location of a package. This is a virtual used
                        exlusively through its subclasses, which are
                        used to differentiate the different types of
                        package source locations.
RepoSubset              RepoSubset
SessionManifest         SessionManifest
SwitchrCtx              SwitchrCtx
SwitchrParam            SwitchrParam A contstructor for a SwitchrParam
                        object representing a number of common
                        parameters understood by the switchr framework
addPkg                  Add a package to an object associated with a
                        manifest
archive_retries         archive_retries
archive_timing          archive_timing
biocReposForVers        biocReposForVers
branch                  Get or set the branch associated with a Package
                        Source
c,SessionManifest-method
                        cmethods Combine 2 or more manifests of the
                        same type (PkgManifest or SessionManifest)
checkIsPkgDir           Check if a directory contains package sources
cranPkgVersManifest     cranPkgVersManifest Create a Pkg manifest which
                        points to tarballs representing a particular
                        version of a CRAN package and versions of its
                        (recursive) dependencies that were contemporary
                        on the first or last day the specified package
                        version resided on CRAN
currentCompEnv          currentCompEnv
defaultRepos            defaultRepos
dep_repos               dep_repos
dl_method               Get or set the download method for retreiving
                        files.
errorOrNonZero          Identify error states from R or external
                        programs
fileFromFileURL         Get path from file URL
findPkgDir              Find a package directory within an SCM checkout
findPkgVersionInRepo    findPkgVersionInRepo
flushSession            flushSession Unload currently loaded packages
                        from the current R session
full_libpaths           full_libpaths
getPkgDir               Construct pockage directory path
gotoVersCommit          gotoVersCommit This is a low-level function not
                        intended for direct use by the end user.
head                    Head and tail operations on manifests
install_packages        install_packages
lazyRepo                lazyRepo
libManifest             libManifest Create a Session- or PkgManifest
                        for the contents of a switchr library.
library_paths           library_paths
loadGRAN                Load a GRAN repo package
loadManifest            loadManifest
locatePkgVersion        locatePkgVersion
location                location generic Retreive the directory
                        associated with an object
logfun                  Get or set the logging function in an object
                        associated with a SwitchrParam
makeBiocSVNURL          Make a Bioconductor SVN url for a package
makeFileURL             make file url
makeLibraryCtx          makeLibraryCtx
makeManifest            Manifest constructor Create a package manifest
makePkgCheckout         Create a checkout of a package and all it's
                        dependencies from a manifest
makePkgDir              makePkgDir This is an internal function not
                        intended to be called directly by end users
makeSeedMan             makeSeedMan
makeSource              Create a PkgSource object for a package
manifest                Get or set the manifest associated with an
                        object
manifest_df             manifest_df
normalizePath2          normalizePath2
notrack                 Notrack directory
nrow                    Number of rows
packages                List the packages installed in a switchr
                        context (library)
parseSessionInfoString
                        Parse text output from printing SessionInfo
                        objects
parsedSessionInfo-class
                        Parsed sessionInfo output
pkgname                 Get or set the package name associated with a
                        Package Source
publishManifest         publishManifest
rVersionManifest        rVersionManifest Create a Pkg manifest which
                        points to tarballs representing the cohort of
                        packages associated with a particular release
                        of R
removeLib               removeLib Remove a switchr library and update
                        the manifest of existing libraries
sh_init_script          Set or Retrieve the shell initialization script
                        for an object
shell_timing            Get or set the number of seconds to wait
                        between successive shell commands
subdir                  subdir
switchBack              switchBack
switchDeps              switchrDeps The base packages, as well as
                        switchr and its dependencies.
switchTo                switchTo
switchrBaseDir          Get or set the base directory for switchr
                        libraries
switchrDontUnload       Get or set the packages to not unload when
                        flushing the system
switchrManifest         switchrManifest
switchrNoUnload         Skip unloading of packages in session
system_w_init           system_w_init
updateManifest          updateManifest
versions_df             versions_df
