annotate                Annotate SNPs in association study
annotateSNPs            Annotate SNPs
availableTransforms     Get a list of available transforms.
dat30                   dat30 data set adapted from multic R package
df2solar                Export phenotype and pedigree data into SOLAR
                        files
explainedVarProp        Get explained variances for a group of SOLAR
                        models.
getFormulaStr           Get formula string from a solarPolygenic object
loadExamplesPhen        Load the example data (GAW10) from SOLAR.
loadMulticPhen          Load the complete data set from R package
                        multic
matchIdNames            Match ID column names
matchMapNames           Match map column names
modelPar                Get a parameter value from 'solarius' models.
package.file            Alternative to system.file
phenodata               dat50 data set adapted from FFBSKAT R package
plotKinship2            Plot the double kinship matrix
plotManh                Plot the association results
plotPed                 Plot the pedigree
plotRes                 Plot the residuals of a polygenic model
readPhen                Read plain-text table files phen and ped
snpdata2solar           Export snp genotypes, genotype covariates and
                        amp to SOLAR
solar                   Call SOLAR program from R
solarAssoc              Run association analysis.
solarAssocClass         S3 class solarAssoc.
solarBaeysAvgPolygenicClass
                        S3 class solarBaeysAvgPolygenic
solarKinship2           Compute empirical double kinship matrix by
                        SOLAR
solarMultipoint         Run multipoint linkage analysis.
solarMultipointClass    S3 class solarMultipoint.
solarMultivarClass      S3 class solarMultivar.
solarPar                Get a parameter value from SOLAR model files.
solarPolyAssoc          S3 class solarPolyAssoc.
solarPolygenic          Run polygenic analysis.
solarPolygenicClass     S3 class solarPolygenic.
solarReadFiles          Read SOLAR output files in a directory
tabplot                 S3 method tabplot
transformData           Apply transforms to a data set.
transformTrait          Transform a trait.
