shazam-package	shazam
Baseline	Baseline-class
Baseline-class	Baseline-class
calcBaseline	calcBaseline
calcDBExpectedMutations	calcDBExpectedMutations
calcDBObservedMutations	calcDBObservedMutations
calcExpectedMutations	calcExpectedMutations
calcObservedMutations	calcObservedMutations
calcTargetingDistance	calcTargetingDistance
CHARGE_MUTATIONS	MUTATION_SCHEMES
clearConsole	clearConsole
collapseByClone	collapseByClone
createBaseline	createBaseline
createMutabilityMatrix	createMutabilityMatrix
createMutationDefinition	createMutationDefinition
createRegionDefinition	createRegionDefinition
createSubstitutionMatrix	createSubstitutionMatrix
createTargetingMatrix	createTargetingMatrix
createTargetingModel	createTargetingModel
distToNearest	distToNearest
extendMutabilityMatrix	extendMutabilityMatrix
extendSubstitutionMatrix	extendSubstitutionMatrix
getBaselineStats	getBaselineStats
getnproc	getnproc
getPlatform	getPlatform
groupBaseline	groupBaseline
HS1FDistance	HS1FDistance
HS5FModel	HS5FModel
HYDROPATHY_MUTATIONS	MUTATION_SCHEMES
IMGT_SCHEMES	IMGT_SCHEMES
IMGT_V	IMGT_SCHEMES
IMGT_V_BY_REGIONS	IMGT_SCHEMES
IMGT_V_BY_REGIONS_NO_CDR3	IMGT_SCHEMES
IMGT_V_NO_CDR3	IMGT_SCHEMES
InfluenzaDb	InfluenzaDb
M1NDistance	M1NDistance
MutationDefinition	MutationDefinition-class
MutationDefinition-class	MutationDefinition-class
MUTATION_SCHEMES	MUTATION_SCHEMES
plotBaselineDensity	plotBaselineDensity
plotBaselineSummary	plotBaselineSummary
plotMutability	plotMutability
POLARITY_MUTATIONS	MUTATION_SCHEMES
RegionDefinition	RegionDefinition-class
RegionDefinition-class	RegionDefinition-class
shazam	shazam
summarizeBaseline	summarizeBaseline
TargetingModel	TargetingModel-class
TargetingModel-class	TargetingModel-class
U5NModel	U5NModel
writeTargetingDistance	writeTargetingDistance
