ESD                     Compute Expected Squared Divergence (ESD) for
                        simple evolutionary models
IC                      Compute information criterion scores and Akaike
                        weights for evoltuionary models
LRI                     Log-Rate, Log-Interval (LRI) method of
                        Gingerich
as.paleoTS              Paleontological time-series class
as.paleoTSfit           Class for fit to paleontological time-series
                        models
bootSimpleComplex       Use parametric bootstrapping to test the fit of
                        a complex model relative to a simpler one
cat.paleoTS             Miscellaneous functions used internally for
                        punctuations
compareModels           Compare output from any set of model fits
dorsal.spines           Stickleback data from Bell et al. (2006)
fit.sgs                 Analyze evolutionary models with well-sampled
                        punctuations
fit3models              Do model fits for standard sets of evolutionary
                        models
fitGpunc                Analyze evolutionary models with unsampled
                        punctuations
fitModeShift            Fit models in which start in Stasis, and then
                        shift to a random walk (or vice versa)
fitMult                 Functions to estimate models over multiple
                        time-series
fitSimple               Fit simple models of trait evolution
ln.paleoTS              Log transform paleontological time series data
logL.GRW                Compute log-likelihoods for random walk and
                        stasis models
logL.joint.GRW          Log-likelihoods for evolutionary models (joint
                        parameterization)
lynchD                  Compute rate metric from Lynch (1990)
mle.GRW                 Maximum likelihood parameter estimators
modelCurves             Function computes model expectations and 95
opt.GRW                 Numerically find maximum likelihood solutions
                        to evolutionary models
opt.GRW.shift           Functions for random walks with shifting
                        parameters
opt.covTrack            Covariate-tracking model
opt.joint.GRW           Optimize evolutionary models (joint
                        parameterization)
paleoTS-package         Analysis of evolutionary time-series
plot.paleoTS            Plots paleoTS objects
sim.GRW                 Simulate evolutionary time-series
sim.OU                  Simulate evolutionary time-series
sim.covTrack            Simulate time-series that tracks a covariate
sim.punc                Simulate evolutionary time-series with changing
                        dynamics
std.paleoTS             Standardize paleontological time series data
sub.paleoTS             Subset an evolutionary time series
test.var.het            Variance heterogeneity test
