advanced.procD.lm       Procrustes ANOVA and pairwise tests for shape
                        data, using complex linear models
arrayspecs              Convert landmark data matrix into array (p x k
                        x n)
bilat.symmetry          Analysis of bilateral symmetry
buildtemplate           Build 3D surface template
compare.evol.rates      Comparing rates of shape evolution on
                        phylogenies
compare.modular.partitions
                        Deprecated functions in geomorph
compare.multi.evol.rates
                        Comparing rates of shape evolution among traits
                        on phylogenies
define.links            Define links between landmarks
define.modules          Define modules (landmark partitions)
define.sliders          Select points to "slide" along curves
digit.curves            Calculate semilandmarks along a curve
digit.fixed             Digitize 3D landmarks on mesh3d object
digitize2d              Digitize 2D landmarks on .jpg files
digitsurface            Digitize 3D fixed landmarks and surface
                        semilandmarks
editTemplate            Edit 3D template
estimate.missing        Estimate locations of missing landmarks
findMeanSpec            Identify specimen closest to the mean of a set
                        of aligned specimens
fixed.angle             Rotate a subset of 2D landmarks to common
                        articulation angle
geomorph-package        Geometric morphometric analyses for 2D/3D data
geomorph.data.frame     Create a data frame with shape data
globalIntegration       Quantify global integration relative to
                        self-similarity
gpagen                  Generalized Procrustes analysis of points,
                        curves, and surfaces
gridPar                 Set up parameters for grids, points, and links
                        in plotRefToTarget
hummingbirds            Landmark data from hummingbird bills (includes
                        sliding semilandmarks on curves)
integration.test        Quantify morphological integration between
                        modules
larvalTails             Tail-shapes of larval salamanders
modularity.test         Evaluate the degree of modular signal in
                        morphometric datasets
morphol.disparity       Morphological disparity for one or more groups
                        of specimens
morphol.integr          Deprecated functions in geomorph
mosquito                Landmarks on mosquito wings
motionpaths             Simulated motion paths
mshape                  Estimate mean shape for a set of aligned
                        specimens
nested.update           Update procD.lm objects with nested effects
phylo.integration       Quantify phylogenetic morphological integration
                        between two or more sets of variables under
                        Brownian motion
phylo.modularity        Evaluate the degree of phylogenetic modular
                        signal in morphometric datasets
phylo.pls               Deprecated functions in geomorph
physignal               Assessing phylogenetic signal in morphometric
                        data
plethShapeFood          Head shape and food use data from Plethodon
                        salamanders
plethodon               Landmark data from Plethodon salamander heads
plethspecies            Average head shape and phylogenetic
                        relationships for several Plethodon salamander
                        species
plot.CR                 Plot Function for geomorph
plot.CR.phylo           Plot Function for geomorph
plot.advanced.procD.lm
                        Plot Function for geomorph
plot.bilat.symmetry     Plot Function for geomorph
plot.evolrate           Plot Function for geomorph
plot.gpagen             Plot Function for geomorph
plot.physignal          Plot Function for geomorph
plot.pls                Plot Function for geomorph
plot.procD.allometry    Plot Function for geomorph
plot.procD.lm           Plot Function for geomorph
plot.trajectory.analysis
                        Plot Function for geomorph
plotAllSpecimens        Plot landmark coordinates for all specimens
plotAllometry           Deprecated functions in geomorph
plotGMPhyloMorphoSpace
                        Plot phylogenetic tree and specimens in tangent
                        space
plotOutliers            Find potential outliers
plotRefToTarget         Plot shape differences between a reference and
                        target specimen
plotTangentSpace        Plot specimens in tangent space
plotspec                Plot 3D specimen, fixed landmarks and surface
                        semilandmarks
print.CR                Print/Summary Function for geomorph
print.CR.phylo          Print/Summary Function for geomorph
print.advanced.procD.lm
                        Print/Summary Function for geomorph
print.bilat.symmetry    Print/Summary Function for geomorph
print.evolrate          Print/Summary Function for geomorph
print.evolrate1         Print/Summary Function for geomorph
print.gpagen            Print/Summary Function for geomorph
print.morphol.disparity
                        Print/Summary Function for geomorph
print.physignal         Print/Summary Function for geomorph
print.plotTangentSpace
                        Print/Summary Function for geomorph
print.pls               Print/Summary Function for geomorph
print.procD.allometry   Print/Summary Function for geomorph
print.procD.lm          Print/Summary Function for geomorph
print.trajectory.analysis
                        Print/Summary Function for geomorph
procD.allometry         Procrustes ANOVA/regression, specifically for
                        shape-size covariation (allometry)
procD.lm                Procrustes ANOVA/regression for shape data
procD.pgls              Phylogenetic ANOVA/regression for shape data
pupfish                 Landmarks on pupfish
ratland                 Landmark data from dataset rat
read.morphologika       Read landmark data from Morphologika file
read.ply                Read mesh data (vertices and faces) from ply
                        files
readland.nts            Read landmark data matrix from nts file
readland.tps            Read landmark data from tps file
readmulti.nts           Read landmark data from multiple nts files
scallopPLY              3D scan of a scallop shell from a .ply file in
                        mesh3d format
scallops                Landmark data from scallop shells
summary.CR              Print/Summary Function for geomorph
summary.CR.phylo        Print/Summary Function for geomorph
summary.advanced.procD.lm
                        Print/Summary Function for geomorph
summary.bilat.symmetry
                        Print/Summary Function for geomorph
summary.evolrate        Print/Summary Function for geomorph
summary.evolrate1       Print/Summary Function for geomorph
summary.gpagen          Print/Summary Function for geomorph
summary.morphol.disparity
                        Print/Summary Function for geomorph
summary.physignal       Print/Summary Function for geomorph
summary.plotTangentSpace
                        Print/Summary Function for geomorph
summary.pls             Print/Summary Function for geomorph
summary.procD.allometry
                        Print/Summary Function for geomorph
summary.procD.lm        Print/Summary Function for geomorph
summary.trajectory.analysis
                        Print/Summary Function for geomorph
trajectory.analysis     Quantify and compare shape change trajectories
two.b.pls               Two-block partial least squares analysis for
                        shape data
two.d.array             Convert (p x k x n) data array into 2D data
                        matrix
warpRefMesh             Creates a mesh3d object warped to the mean
                        shape
warpRefOutline          Creates a 2D outline warped to the mean shape
writeland.tps           Write landmark data to tps file
