Fst                     Fixation Index
NAM-package             Nested Association Mapping Analysis
calcSize                Internal functions
cleanREP                Manage Duplicated Genotypes
gibbs                   Bayesian Mixed Model
gwas                    Empirical Bayes Genome Wide Association Mapping
plot.NAM                Manhattan plot for Association Studies
reference               Changing the Reference Genotype
reml                    Restricted Maximum Likelihood
snpH2                   SNP heritability
snpQC                   SNP Quality Control
tpod                    Tetra-seed Pods
wgr                     Whole-genome Regression
