GENEapply               An internal C++ function
JAGUAR-package          Joint analysis of genotype and group-specific
                        variability using a novel score test to map
                        eQTL
cis_eqtl                An internal C++ function
jagSIM                  An internal C++ function
jag_fun                 An internal C++ function
jaguar_cis              Perform cis-eQTL analysis
jaguar_example          Simulated multi-tissue eQTL data
jaguar_gwa              Perform genome-wide analysis
jaguar_plotqtl          Plotting the eQTL results
jaguar_process          Obtain significant gene-SNP pairs based on a
                        predetermined threshold value
jaguar_sim              Run null or power simulations
jaguar_slice            Slice gene expression data into multiple
                        partitions
rowsumscpp              An internal C++ function
vcSIM                   An internal C++ function
