HapEstXXR-package       Mulit-locus stepwise regression (MSR)
allele1to2              Convert genotype matrix from two different
                        types
catt                    Cochrane armitage trend test (CATT) for SNP
                        genotypes
coding.baseline.allele
                        Standardization of coding alleles
dec2bin                 Decimal To Binary Conversion
itegeppXXR              Haplotype estimation routine for single
                        individual data
maf                     Minor alle frequencies
makeHaploviewInputFile
                        Make Haploview input files
makePlinkInputFile      Make PLINK input files
msr                     Multi-locus stepwise regression
multi.snp.test          Internal function used for multi-locus
                        associations tests.
order.families          Ordering of nuclear family data
powerset                Generating power set of a set
read.data               Read data from different input files
read.haploview          Read a haploview dataset
single.haplotype.test   single haplotype test
single.snp.test         Regression analysis with single SNP genotypes
                        as independent variable
