CHNOSZ-package          Chemical Thermodynamics and Activity Diagrams
EOSregress              Regress Equations-of-State Parameters for
                        Aqueous Species
IAPWS95                 Properties of Water from IAPWS-95
affinity                Chemical Affinities of Formation Reactions
anim.TCA                Functions to Make Animations
basis                   Define Basis Species
buffer                  Calculating Buffered Chemical Activities
diagram                 Equilibrium Chemical Activity Diagrams
eqdata                  Read data from an EQ6 output file
equilibrate             Equilibrium Chemical Activities of Species
examples                Run Examples from the Documentation
extdata                 Extra Data
findit                  Gridded Search to Optimize Objective Functions
hkf                     Equations of State
info                    Search the Thermodynamic Database
ionize.aa               Properties of Ionization of Proteins
iprotein                Amino Acid Compositions of Proteins
makeup                  Parse Chemical Formulas
more.aa                 Proteins from Model Organisms
mosaic                  Chemical Affinities with Changing Basis Species
nonideal                Activity coefficients of aqueous species
objective               Objective Functions
protein                 Examples of Calculations for Proteins
protein.info            Summaries of Thermodynamic Properties of
                        Proteins
read.expr               Experimental Data for Protein Abundances and
                        Localizations
revisit                 Plots and Optima of Objective Functions
sideeffects             Side effects of functions in CHNOSZ
species                 Species of Interest
subcrt                  Properties of Species and Reactions
swap.basis              Swap Basis Species
taxonomy                Extract Data from NCBI Taxonomy Files
thermo                  Thermodynamic Database and System Definition
transfer                Mass Transfer Calculations
util.affinity           Functions to Work With Chemical Affinities
util.args               Functions for Processing Argument Lists
util.array              Functions to Work with Multidimensional Arrays
util.blast              Functions to Work with BLAST Output Files
util.character          Functions to Manipulate Character Objects
util.data               Functions to Work with the Thermodynamic
                        Database
util.expression         Functions to Express Chemical Formulas and
                        Properties
util.fasta              Functions for Reading FASTA Files and
                        Downloading from UniProt
util.formula            Functions to Work with Chemical Formulas
util.list               Functions to Work with Lists
util.matrix             Functions for Various Matrix Operations
util.misc               Functions for Miscellaneous Tasks
util.plot               Functions to Create and Modify Plots
util.program            Functions for Various Programming Tasks
util.seq                Functions to Work with Sequence Data
util.units              Functions to Convert Units
util.water              Functions for Properties of Water and Steam
water                   Properties of Water
wjd                     Gibbs Energy Minimization by Steepest Descent
