Nonparallel Differential Expressed Genes

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Documentation for package ‘timeSeq’ version 1.0.0

Help Pages

timeSeq_1.0.0-package Statistical Inference for Time Course RNA-Seq Data using a Negative Binomial Mixed-Effects Model
geneset.fit Object returned by timeSeq.geneset for simualtion examples
model.fit Object returned by timeSeq for simualtion examples
timeSeq Non-parallel Differential Expression Genes Detection
timeSeq.geneset Non-parallel Differential Expression Gene Set Detection
timeSeq.genesetscreeplot Scree Plot of Kullback Leibler Distance Ratios for Gene Sets
timeSeq.heatmap Heatmap of Most Significant NDPE Genes
timeSeq.permutate Permutation for Significance Testing
timeSeq.plot Display the Significant NDPE Genes
timeSeq.screeplot Scree Plot of Kullback Leibler Distance Ratios
timeSeq.sort Sort NDPE Genes by Kullback Leibler Distance Ratios
timeSeq_1.0.0 Statistical Inference for Time Course RNA-Seq Data using a Negative Binomial Mixed-Effects Model