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| signal.hsmm-package | signal.hsmm - prediction of signal peptides |
| aaaggregation | Scheme for amino acid aggregation |
| benchmark_dat | Benchmark data set for signal.hsmm |
| duration_viterbi | Compute most probable path with extended Viterbi algorithm |
| find_nhc | Localize n-, h- and c-region in signal peptide |
| gui_signal.hsmm | GUI for signal.hsmm |
| hsmm_pred | hsmm_pred class |
| hsmm_pred_list | hsmm_pred_list class |
| is_protein | Protein test |
| plot.hsmm_pred | Plot single signal.hsmm prediction |
| pred2df | Convert list of signal.hsmm predictions |
| predict.sighsmm_model | Predict sighsmm_model object |
| read_txt | Read sequences from .txt file |
| read_uniprot | Read data from UniProt database |
| run_signal.hsmm | Predict presence of signal peptide in protein |
| signal.hsmm | signal.hsmm - prediction of signal peptides |
| summary.hsmm_pred | Summarize single signal.hsmm prediction |
| summary.hsmm_pred_list | Summarize list of signal.hsmm predictions |
| train_hsmm | Train sighsmm_model object |