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| rplant-package | rplant |
| CheckJobStatus | Executing analytical applications |
| CompareNames | Resolving Names via TNRS |
| DeleteDir | Directory management |
| DeleteFile | File management |
| DeleteJob | Executing analytical applications |
| ex.lp.fasta | Land plant rbcL sequences |
| ex.lp.fasta.rda | Land plant rbcL sequences |
| GetAppInfo | Deployed applications |
| GetCitations | DE citations |
| GetJobHistory | Executing analytical applications |
| GetPhylotasticToken | Resolving Names via TNRS |
| GetToken | Authentication functions |
| landplants.fasta | Land plant rbcL sequences |
| ListApps | Deployed applications |
| ListDir | Directory management |
| ListJobOutput | Executing analytical applications |
| MakeDir | Directory management |
| MoveFile | File management |
| RenameFile | File management |
| RenewToken | Authentication functions |
| ResolveNames | Resolving Names via TNRS |
| RetrieveJob | Executing analytical applications |
| RetrieveTNRSNames | Resolving Names via TNRS |
| rPlant | rplant |
| rplant | rplant |
| RunClustal | ClustalW alignment |
| RunMafft | MAFFT Multiple Sequence Alignment |
| RunMuscle | MUSCLE alignment |
| RunParsdna | Run Phylip Parsimony |
| RunParsprotein | Run Phylip Parsimony |
| RunQuicktree | Quicktree |
| RunRAxMLdna | RAxML |
| RunRAxMLprotein | RAxML |
| short.landplants.phy | Land plant rbcL sequences |
| SubmitJob | Executing analytical applications |
| SupportFile | File management |
| TNRS | Resolving Names via TNRS |
| UploadFile | File management |