N-Gram Analysis of Biological Sequences

Documentation for package ‘biogram’ version 1.1

biogram-package	biogram - analysis of biological sequences using n-grams
biogram	biogram - analysis of biological sequences using n-grams
calc_ig	Calculate IG of features
calc_ig_single	Calculate IG for single feature
count_multigrams	Detect and count multiple n-grams in sequences
count_ngrams	Count n-grams in sequences
create_feature_target	Create feature according to given contingency matrix
create_ngrams	Get All Possible N-Grams
criterions	Critetions
criterion_distribution	Compute criterion distribution
cut.feature_test	Categorize tested features
decode_ngrams	Decode n-grams
degenerate	Degenerate protein sequence
fast_crosstable	Very fast 2d cross-tabulation
feature_test	feature_test class
get_ngrams_ind	Get Indices of N-Grams
human_cleave	Human signal peptides cleavage sites
is_ngram	Validate n-gram
l2n	Convert letters to numbers
n2l	Convert numbers to letters
position_ngrams	Position n-grams
print.feature_test	Print tested features
seq2ngrams	Extract N-Grams From Sequence
summary.feature_test	Summarize tested features
test_features	Permutation test for feature selection