Bayesian spatial survival analysis with parametric proportional hazards models.

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Documentation for package ‘spatsurv’ version 0.9-8

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B C D E F G H I L M N O P Q R S T V W Y

spatsurv-package spatsurv

-- B --

basehazard basehazard function
basehazard.basehazardspec basehazard.basehazardspec function
baselinehazard baselinehazard function
betapriorGauss betapriorGauss function
BsplineHaz BsplineHaz function

-- C --

checkSurvivalData checkSurvivalData function
circulant circulant function
circulant.matrix circulant.matrix function
circulant.numeric circulant.numeric function
circulantij circulantij function
covmodel covmodel function
cumbasehazard cumbasehazard function
cumbasehazard.basehazardspec cumbasehazard.basehazardspec function

-- D --

densityquantile densityquantile function
densityquantile.basehazardspec densityquantile.basehazardspec function
densityquantile_PP densityquantile_PP function
density_PP density_PP function
derivindepGaussianprior derivindepGaussianprior function
distinfo distinfo function
distinfo.basehazardspec distinfo.basehazardspec function

-- E --

estimateY estimateY function
etapriorGauss etapriorGauss function
Et_PP Et_PP function
EvalCov EvalCov function
ExponentialCovFct ExponentialCovFct function
exponentialHaz exponentialHaz function

-- F --

FFTgrid FFTgrid function
fixedpars fixedpars function
fixmatrix fixmatrix function
frailtylag1 frailtylag1 function

-- G --

GammafromY GammafromY function
gencens gencens function
getcov getcov function
getleneta getleneta function
getparranges getparranges function
getsurvdata getsurvdata function
gompertzHaz gompertzHaz function
gradbasehazard gradbasehazard function
gradbasehazard.basehazardspec gradbasehazard.basehazardspec function
gradcumbasehazard gradcumbasehazard function
gradcumbasehazard.basehazardspec gradcumbasehazard.basehazardspec function
grid2spdf grid2spdf function
grid2spix grid2spix function
grid2spts grid2spts function
gridY gridY function
guess_t guess_t function

-- H --

hasNext generic hasNext method
hasNext.iter hasNext.iter function
hazardexceedance hazardexceedance function
hazardpars hazardpars function
hazard_PP hazard_PP function
hessbasehazard hessbasehazard function
hessbasehazard.basehazardspec hessbasehazard.basehazardspec function
hesscumbasehazard hesscumbasehazard function
hesscumbasehazard.basehazardspec hesscumbasehazard.basehazardspec function

-- I --

indepGaussianprior indepGaussianprior function
inference.control inference.control function
invtransformweibull invtransformweibull function
is.burnin is this a burn-in iteration?
is.retain do we retain this iteration?
iteration iteration number

-- L --

logPosterior logPosterior function
logPosterior_gridded logPosterior_gridded function
loop.mcmc loop over an iterator

-- M --

makehamHaz makehamHaz function
maxlikparamPHsurv maxlikparamPHsurv function
MCE MCE function
mcmcLoop iterator for MCMC loops
mcmcpars mcmcpars function
mcmcPriors mcmcPriors function
mcmcProgressNone null progress monitor
mcmcProgressPrint printing progress monitor
mcmcProgressTextBar text bar progress monitor

-- N --

nextStep next step of an MCMC chain
NonSpatialLogLikelihood_or_gradient NonSpatialLogLikelihood_or_gradient function

-- O --

omegapriorGauss omegapriorGauss function

-- P --

plotsurv plotsurv function
posteriorcov posteriorcov function
predict.mcmcspatsurv predict.mcmcspatsurv function
print.mcmc print.mcmc function
print.mcmcspatsurv print.mcmcspatsurv function
print.mlspatsurv print.mlspatsurv function
priorposterior priorposterior function
proposalVariance proposalVariance function
proposalVariance_gridded proposalVariance_gridded function

-- Q --

QuadApprox QuadApprox function
quantile.mcmcspatsurv quantile.mcmcspatsurv function
quantile.mlspatsurv quantile.mlspatsurv function

-- R --

randompars randompars function
resetLoop reset iterator

-- S --

setTxtProgressBar2 set the progress bar
setupHazard setupHazard function
simsurv simsurv function
spatialpars spatialpars function
spatsurv spatsurv
spatsurvVignette spatsurvVignette function
SpikedExponentialCovFct SpikedExponentialCovFct function
summary.mcmc summary.mcmc function
summary.mcmcspatsurv summary.mcmcspatsurv function
surv3d Spatial Survival Plot in 3D
survival_PP survival_PP function
survspat survspat function
survspatNS survspatNS function

-- T --

tpowHaz tpowHaz function
transformweibull transformweibull function
txtProgressBar2 A text progress bar with label

-- V --

vcov.mcmcspatsurv vcov.mcmcspatsurv function
vcov.mlspatsurv vcov.mlspatsurv function

-- W --

weibullHaz weibullHaz function

-- Y --

YfromGamma YfromGamma function