FCROS to search for differentially expressed genes and to detect recurrent chromosomal copy number aberrations.

Documentation for package ‘fcros’ version 1.3

fcros-package	FCROS to search for differentially expressed genes and to detect recurrent chromosomal copy number aberrations
fcros	fcros() to search for differentially expressed genes
fcros2	fcros2() to search for differentially expressed genes
fcrosFCmat	fcrosFCmat(): Computation of a matrix of changes using pairwise comparisons of samples from two biological conditions dataset
fcrosHistoPlot	fcrosHistoPlot(): Histogram plot function of the fcros results
fcrosMod	fcrosMod() to search for differentially expressed genes or to detect recurrent copy number aberrations
fcrosRead	fcrosRead(): for reading a tab delimited text file
fcrosTopN	fcrosTopN(): Search for the top N differentially expressed genes
fcrosTtest	Student t-test for detecting differentially expressed genes
fcrosVolcanoPlot	fcrosVolcanoPlot(): Performs a volcano plot of the fcros statistics
fcrosWrite	This function allows to write the fcros results in a tab-delimited text file
fdata	Example of dataset for the fcros package.