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| directPA-package | Direction Pathway Analysis Package |
| directPA | Direction Pathway Analysis |
| geneStats | Gene Level Statistics |
| Ins | Insulin perturbation vesus control |
| MK | MK perturbation vesus control |
| pathwayStats | Pathway Level Statistics |
| reactome.list | Reactome Database |
| rotate2Sphere | Polar Coordinates Rotation |
| rotate3Sphere | Spherical Coordinates Rotation |
| Wmn | Wortmannin perturbation vesus control |