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| cluster.diagnostic | Function for Plotting Summary Cluster Diagnostic Plots |
| is.empty | Checks if Object is Empty |
| is.valid | Validation Subroutine to Test the Bootstrap Set of Indices |
| km.clustering | Wrapper Subroutine Around C Subroutine for 'K-means' Clustering Algorithm |
| MeanVarReg | Mean-Variance Regularization Core Subroutine |
| merging.cluster | Variable-Cluster Configuration Merging Subroutine |
| MVR | Mean-Variance Regularization Package |
| mvr | Function for Mean-Variance Regularization and Variance Stabilization |
| MVR.news | Function to Display the NEWS File |
| mvrt | Mean-Variance Regularized t-Test Statistic Subroutine |
| mvrt.test | Function for Computing Mean-Variance Regularized T-test Statistic and Its Significance |
| normalization.diagnostic | Function for Plotting Summary Normalization Diagnostic Plots |
| pooled.mean | Pooled Group Sample Mean Subroutine |
| pooled.sd | Pooled Group Sample Standard Deviation Subroutine |
| Real | Real Proteomics Dataset |
| sim.dis | Similarity Statistic Subroutine |
| stabilization.diagnostic | Function for Plotting Summary Variance Stabilization Diagnostic Plots |
| Synthetic | Multi-Groups Synthetic Dataset |
| target.diagnostic | Function for Plotting Summary Target Moments Diagnostic Plots |
| withinsumsq | Within-Cluster Sum of Squares Distances Subroutine |