Estimation of background-subtracted fluorescence data

Documentation for package ‘FluOMatic’ version 1.0

FluOMatic-package	Estimation of background-subtracted fluorescence data
BG.AddRemove	Determine the pixels of a ROI having a different background fluorescence
BG.createData	Create data sets according to the fluorescence model described in Joucla et al. (Cell Calcium, in revision).
BG.fitAll	Fit a homogeneous- or non-homogeneous-background model on a single-trial data set
BG.fluoNormFct	Create a function used to calculate a normalized fluorescence transient.
BG.ig	Get initial guesses for parameters of a homogeneous- or non-homogeneous-background model
BG.mkFct	Create the function passed to nls in order to fit the fluorescence model.
BG.plotAllPixels	Plot the raw and predicted fluorescence transients of each individual pixel using a 2D representation.
BG.track	Fit the data with a non-homogeneous-background fluorescence model
FluOMatic	Estimation of background-subtracted fluorescence data
POMC	Calcium imaging data set obtained from POMC neurons of the mouse hypothalamus